Wall clock time and date at job start Mon Mar 30 2020 01:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99787 * 2 1 4 4 H 1.48506 * 109.47020 * 270.00192 * 3 2 1 5 5 H 1.48498 * 109.47145 * 30.00138 * 3 2 1 6 6 H 1.48499 * 109.46942 * 150.00395 * 3 2 1 7 7 C 1.37877 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00155 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47011 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99588 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00434 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99575 * 180.02562 * 11 10 9 14 14 C 1.52996 * 109.47094 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47210 * 179.97438 * 14 13 11 16 16 N 1.46506 * 109.46992 * 179.97438 * 15 14 13 17 17 C 1.36370 * 125.96582 * 269.68933 * 16 15 14 18 18 O 1.35627 * 125.98599 * 0.03646 * 17 16 15 19 19 N 1.30902 * 108.02387 * 179.89190 * 17 16 15 20 20 N 1.40109 * 107.94108 * 0.36863 * 19 17 16 21 21 C 1.30908 * 107.94040 * 359.76947 * 20 19 17 22 22 O 1.35631 * 125.98942 * 179.97438 * 21 20 19 23 23 H 0.97000 * 120.00429 * 359.97438 * 1 2 3 24 24 H 1.09008 * 109.47053 * 60.00445 * 9 7 2 25 25 H 1.09003 * 109.47752 * 300.00207 * 9 7 2 26 26 H 0.96992 * 119.99723 * 0.02562 * 10 9 7 27 27 H 1.08997 * 109.47561 * 59.99923 * 13 11 10 28 28 H 1.09000 * 109.46976 * 299.99617 * 13 11 10 29 29 H 1.09000 * 109.47531 * 59.99538 * 14 13 11 30 30 H 1.09008 * 109.47250 * 300.00113 * 14 13 11 31 31 H 1.09000 * 109.46884 * 60.00289 * 15 14 13 32 32 H 1.09000 * 109.46955 * 299.99604 * 15 14 13 33 33 H 0.96698 * 114.00049 * 90.00044 * 18 17 16 34 34 H 0.96700 * 113.99434 * 270.02085 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5753 0.0001 11 6 5.3250 -2.8214 0.0001 12 8 6.1131 -1.8996 -0.0004 13 6 5.8273 -4.2423 -0.0003 14 6 7.3573 -4.2422 0.0005 15 6 7.8673 -5.6847 0.0007 16 7 9.3324 -5.6846 0.0008 17 6 10.1334 -5.6907 -1.1028 18 8 9.7134 -5.6971 -2.3924 19 7 11.3788 -5.6860 -0.6994 20 7 11.3786 -5.6853 0.7017 21 6 10.1331 -5.6846 1.1048 22 8 9.7127 -5.6842 2.3943 23 1 -0.4851 0.8400 0.0004 24 1 3.8752 -0.6796 0.8896 25 1 3.8746 -0.6807 -0.8905 26 1 3.3696 -3.3124 0.0001 27 1 5.4642 -4.7558 -0.8905 28 1 5.4640 -4.7564 0.8895 29 1 7.7202 -3.7288 0.8909 30 1 7.7212 -3.7279 -0.8891 31 1 7.5045 -6.1984 -0.8896 32 1 7.5036 -6.1986 0.8905 33 1 9.5920 -4.8156 -2.7709 34 1 9.5906 -6.5676 2.7683 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635341825.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:22 Heat of formation + Delta-G solvation = -71.910968 kcal Electronic energy + Delta-G solvation = -19865.637255 eV Core-core repulsion = 16413.704455 eV Total energy + Delta-G solvation = -3451.932801 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.29767 -40.60691 -39.11448 -38.03241 -36.77552 -36.09924 -34.42450 -33.41353 -30.67261 -30.26716 -27.92432 -24.58415 -23.82165 -23.29381 -22.60083 -21.36327 -19.84275 -19.67076 -19.09704 -17.95279 -17.66553 -17.15450 -16.99022 -16.85496 -16.37359 -15.87928 -15.50072 -15.02104 -14.75542 -14.32507 -14.16951 -13.95341 -13.63925 -13.34813 -13.07830 -13.04272 -12.87080 -12.70551 -12.32824 -11.96151 -11.93414 -11.66808 -11.50204 -11.08743 -10.93615 -10.80429 -10.54498 -9.92912 -8.41753 -6.48455 0.52312 0.75789 1.15512 1.30485 1.33802 1.45165 1.75592 2.23212 2.25948 2.46749 2.93450 2.94006 3.52853 3.70905 3.91576 4.07545 4.17941 4.31790 4.40403 4.46974 4.67741 4.71564 4.82537 5.00192 5.06067 5.17549 5.25992 5.34872 5.53406 6.07361 6.25130 6.47602 6.53569 6.81226 6.86041 7.14931 7.44257 8.72870 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.036532 B = 0.003118 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.276503 B = 8978.271762 C = 9046.856992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.230 3.770 10 N -0.706 5.706 11 C 0.493 3.507 12 O -0.606 6.606 13 C -0.121 4.121 14 C -0.112 4.112 15 C 0.104 3.896 16 N -0.505 5.505 17 C 0.417 3.583 18 O -0.435 6.435 19 N -0.344 5.344 20 N -0.345 5.345 21 C 0.418 3.582 22 O -0.435 6.435 23 H 0.272 0.728 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.411 0.589 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.433 0.567 34 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.296 -16.489 -0.045 21.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.174 4.174 3 Si 0.759 3.241 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.106 3.894 10 N -0.356 5.356 11 C 0.281 3.719 12 O -0.489 6.489 13 C -0.161 4.161 14 C -0.151 4.151 15 C -0.018 4.018 16 N -0.224 5.224 17 C 0.106 3.894 18 O -0.238 6.238 19 N -0.188 5.188 20 N -0.190 5.190 21 C 0.107 3.893 22 O -0.239 6.239 23 H 0.081 0.919 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.247 0.753 27 H 0.150 0.850 28 H 0.146 0.854 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.296 0.704 34 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 16.222 -15.731 -0.039 22.597 hybrid contribution -1.893 0.965 0.021 2.125 sum 14.329 -14.766 -0.018 20.575 Atomic orbital electron populations 1.69973 1.07642 1.28598 1.50743 1.25585 0.95501 1.02597 0.93695 0.85893 0.79189 0.79599 0.79405 1.19019 1.19902 1.18719 1.21309 0.89995 0.94596 1.52441 0.91950 1.19065 0.93336 0.81617 0.95415 1.46065 1.07144 1.09480 1.72903 1.21645 0.81791 0.93291 0.75127 1.90657 1.56449 1.48906 1.52880 1.21550 0.95309 0.91248 1.07943 1.21550 0.94763 0.95849 1.02968 1.22253 0.73501 0.97707 1.08292 1.47217 1.10543 1.59170 1.05488 1.21362 0.86020 0.99297 0.82755 1.84889 1.86840 1.36809 1.15273 1.78231 1.14936 1.24373 1.01290 1.78233 1.14919 1.24616 1.01242 1.21361 0.86040 0.99135 0.82723 1.84978 1.86827 1.36878 1.15244 0.91854 0.97343 0.97310 0.75252 0.85048 0.85356 0.92836 0.92126 0.85343 0.85279 0.70401 0.70109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.42 13.96 21.45 0.30 -54.12 16 2 C 0.03 1.47 5.47 84.65 0.46 1.93 16 3 Si 0.94 43.27 27.47 68.60 1.88 45.15 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.26 -12.13 6.54 99.48 0.65 -11.48 16 7 C -0.55 -29.01 9.83 25.60 0.25 -28.76 16 8 H 0.06 3.45 7.84 -2.91 -0.02 3.43 16 9 C 0.23 10.78 4.50 85.63 0.38 11.16 16 10 N -0.71 -25.16 5.55 -466.76 -2.59 -27.75 16 11 C 0.49 15.58 7.83 87.66 0.69 16.26 16 12 O -0.61 -25.24 15.98 -3.03 -0.05 -25.29 16 13 C -0.12 -1.88 5.70 29.85 0.17 -1.71 16 14 C -0.11 -1.81 4.83 30.59 0.15 -1.66 16 15 C 0.10 0.92 6.01 86.38 0.52 1.44 16 16 N -0.50 -8.07 2.76 -755.17 -2.08 -10.16 16 17 C 0.42 8.13 9.15 179.72 1.65 9.77 16 18 O -0.43 -5.75 13.57 -89.40 -1.21 -6.97 16 19 N -0.34 -9.22 12.72 -173.66 -2.21 -11.43 16 20 N -0.35 -9.26 12.72 -173.65 -2.21 -11.47 16 21 C 0.42 8.14 9.15 179.71 1.65 9.79 16 22 O -0.44 -5.71 13.58 -89.44 -1.21 -6.92 16 23 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 24 H 0.01 0.43 7.20 -2.38 -0.02 0.42 16 25 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 26 H 0.41 12.20 8.32 -92.71 -0.77 11.43 16 27 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 30 H 0.06 1.16 8.10 -2.38 -0.02 1.14 16 31 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.43 1.96 9.06 -74.06 -0.67 1.29 16 34 H 0.44 0.32 9.06 -74.06 -0.67 -0.35 16 Total: -1.00 -83.93 307.66 -4.46 -88.40 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -0.99 Total: 2.32 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 5.91 Total: 18.22 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -8.79 Total: -114.92 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -2.48 Total: -39.17 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.15 kcal Total: -83.93 -4.46 -88.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635341825.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.488 kcal (2) G-P(sol) polarization free energy of solvation -83.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds