Wall clock time and date at job start Mon Mar 30 2020 01:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00066 * 2 1 4 4 H 1.48497 * 109.47058 * 270.00368 * 3 2 1 5 5 H 1.48502 * 109.47165 * 30.00345 * 3 2 1 6 6 H 1.48493 * 109.46770 * 150.00275 * 3 2 1 7 7 C 1.37870 * 119.99639 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99935 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00407 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47279 * 179.97438 * 9 7 2 11 11 C 1.34786 * 120.00067 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99837 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99946 * 179.97438 * 11 10 9 14 14 C 1.50699 * 109.47158 * 179.97438 * 13 11 10 15 15 C 1.36178 * 120.19431 * 265.00769 * 14 13 11 16 16 C 1.39313 * 120.86990 * 179.97438 * 15 14 13 17 17 C 1.36109 * 121.06827 * 359.97438 * 16 15 14 18 18 C 1.40554 * 119.74449 * 0.27978 * 17 16 15 19 19 N 1.33689 * 121.07244 * 180.27964 * 18 17 16 20 20 C 1.31084 * 121.32245 * 179.74423 * 19 18 17 21 21 C 1.39331 * 121.74804 * 359.69691 * 20 19 18 22 22 C 1.36566 * 119.94360 * 0.02562 * 21 20 19 23 23 C 1.40393 * 120.19573 * 84.97915 * 14 13 11 24 24 H 0.97008 * 120.00118 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47120 * 59.99639 * 9 7 2 26 26 H 1.09002 * 109.47117 * 299.99877 * 9 7 2 27 27 H 0.96997 * 120.00198 * 359.97438 * 10 9 7 28 28 H 1.09003 * 109.47083 * 59.99935 * 13 11 10 29 29 H 1.09002 * 109.47324 * 300.00069 * 13 11 10 30 30 H 1.08007 * 119.56281 * 359.94395 * 15 14 13 31 31 H 1.08007 * 119.46405 * 179.97438 * 16 15 14 32 32 H 1.08002 * 120.12383 * 179.97438 * 17 16 15 33 33 H 1.08003 * 119.12024 * 179.72520 * 20 19 18 34 34 H 1.08001 * 120.02335 * 179.97438 * 21 20 19 35 35 H 1.08007 * 120.92795 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6126 -0.0018 11 6 1.7536 -4.8834 -0.0025 12 8 0.5612 -5.1050 -0.0017 13 6 2.7329 -6.0288 -0.0044 14 6 1.9794 -7.3339 -0.0042 15 6 1.7271 -7.9789 1.1682 16 6 1.0314 -9.1858 1.1848 17 6 0.5838 -9.7544 0.0320 18 6 0.8293 -9.1216 -1.1988 19 7 0.3971 -9.6536 -2.3466 20 6 0.6190 -9.0652 -3.4967 21 6 1.3083 -7.8572 -3.5812 22 6 1.7726 -7.2564 -2.4461 23 6 1.5329 -7.8916 -1.2128 24 1 -0.4851 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 3.1566 -3.4354 -0.0028 28 1 3.3603 -5.9718 0.8852 29 1 3.3588 -5.9703 -0.8948 30 1 2.0713 -7.5494 2.0975 31 1 0.8441 -9.6782 2.1276 32 1 0.0464 -10.6907 0.0625 33 1 0.2576 -9.5288 -4.4027 34 1 1.4759 -7.3969 -4.5437 35 1 2.3084 -6.3198 -2.4931 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635343063.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:59 Heat of formation + Delta-G solvation = -16.256440 kcal Electronic energy + Delta-G solvation = -19344.961309 eV Core-core repulsion = 16306.291133 eV Total energy + Delta-G solvation = -3038.670176 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.93653 -40.40657 -38.09233 -36.15571 -35.05103 -34.34640 -32.32959 -31.46806 -29.87664 -28.09710 -25.23404 -24.66686 -24.53404 -22.28869 -21.16045 -19.11943 -18.92053 -18.06074 -17.91848 -17.49400 -17.00598 -16.23346 -16.04443 -15.55023 -15.32617 -15.16830 -14.61120 -14.55346 -14.32891 -13.99206 -13.92476 -13.81408 -12.96879 -12.88850 -12.70144 -12.61110 -12.50481 -12.22519 -12.13077 -11.49413 -11.46865 -10.81119 -10.80728 -10.49244 -9.83443 -9.70060 -9.13710 -8.29448 -6.46312 -0.56848 -0.10760 0.99778 1.43575 1.45673 1.56984 1.76225 1.97495 2.33791 2.64336 3.05782 3.16918 3.38804 3.47956 3.82024 3.86362 3.89711 4.08768 4.17008 4.25524 4.34594 4.49813 4.55336 4.63053 4.88576 5.01952 5.09046 5.13112 5.15547 5.23436 5.41369 5.48457 5.51322 5.62115 5.69346 5.84527 5.94250 6.65316 6.90963 6.92606 7.23588 7.50516 8.82717 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.029778 B = 0.003899 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.052226 B = 7178.874480 C = 7636.615259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.706 5.706 11 C 0.498 3.502 12 O -0.597 6.597 13 C -0.095 4.095 14 C -0.054 4.054 15 C -0.116 4.116 16 C -0.093 4.093 17 C -0.114 4.114 18 C 0.097 3.903 19 N -0.502 5.502 20 C 0.123 3.877 21 C -0.176 4.176 22 C -0.072 4.072 23 C -0.108 4.108 24 H 0.268 0.732 25 H -0.015 1.015 26 H -0.015 1.015 27 H 0.410 0.590 28 H 0.139 0.861 29 H 0.128 0.872 30 H 0.148 0.852 31 H 0.162 0.838 32 H 0.146 0.854 33 H 0.192 0.808 34 H 0.167 0.833 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.298 -16.985 -2.582 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.177 1.177 7 C -0.593 4.593 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.357 5.357 11 C 0.286 3.714 12 O -0.479 6.479 13 C -0.134 4.134 14 C -0.056 4.056 15 C -0.134 4.134 16 C -0.112 4.112 17 C -0.133 4.133 18 C -0.023 4.023 19 N -0.210 5.210 20 C -0.049 4.049 21 C -0.196 4.196 22 C -0.098 4.098 23 C -0.110 4.110 24 H 0.077 0.923 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.246 0.754 28 H 0.157 0.843 29 H 0.145 0.855 30 H 0.165 0.835 31 H 0.179 0.821 32 H 0.164 0.836 33 H 0.208 0.792 34 H 0.185 0.815 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.855 -17.820 -2.425 19.625 hybrid contribution 0.456 1.927 -0.106 1.983 sum 8.310 -15.894 -2.531 18.113 Atomic orbital electron populations 1.70148 1.08362 1.28537 1.50086 1.26069 0.95719 1.03947 0.93862 0.85164 0.78545 0.76965 0.78598 1.19613 1.21141 1.17733 1.21634 0.94388 0.90500 1.52749 0.89580 1.18511 0.88719 0.84455 0.93905 1.46186 1.11239 1.05353 1.72887 1.21261 0.89664 0.84709 0.75809 1.90682 1.19574 1.85499 1.52110 1.20767 0.96742 0.87685 1.08187 1.19351 0.98356 0.95024 0.92831 1.21170 0.98513 0.95666 0.98025 1.21216 0.95856 0.94967 0.99200 1.21023 1.00938 1.01119 0.90204 1.19216 0.96732 0.92643 0.93729 1.68053 1.19848 1.34459 0.98676 1.23551 0.92865 0.92222 0.96295 1.22237 0.99630 0.97194 1.00522 1.21764 0.97013 0.99002 0.91983 1.18898 1.00686 0.96309 0.95073 0.92308 0.99726 0.99688 0.75362 0.84280 0.85458 0.83463 0.82056 0.83643 0.79157 0.81516 0.83997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.98 41.65 29.54 68.60 2.03 43.67 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 7 C -0.55 -29.61 9.28 25.60 0.24 -29.37 16 8 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 9 C 0.27 14.46 5.43 85.63 0.46 14.92 16 10 N -0.71 -28.48 5.55 -466.79 -2.59 -31.07 16 11 C 0.50 19.06 7.82 87.65 0.69 19.75 16 12 O -0.60 -29.55 16.03 -3.03 -0.05 -29.60 16 13 C -0.09 -2.36 5.24 29.10 0.15 -2.21 16 14 C -0.05 -1.53 4.38 -19.82 -0.09 -1.62 16 15 C -0.12 -2.86 9.58 22.05 0.21 -2.65 16 16 C -0.09 -2.09 9.94 22.03 0.22 -1.87 16 17 C -0.11 -2.97 9.98 22.34 0.22 -2.74 16 18 C 0.10 2.97 6.60 40.28 0.27 3.24 16 19 N -0.50 -14.61 10.34 -188.64 -1.95 -16.56 16 20 C 0.12 2.85 11.15 85.07 0.95 3.79 16 21 C -0.18 -3.98 10.03 22.14 0.22 -3.75 16 22 C -0.07 -1.95 9.37 22.50 0.21 -1.74 16 23 C -0.11 -3.27 5.74 -21.28 -0.12 -3.39 16 24 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 25 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 26 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 27 H 0.41 13.17 8.32 -92.71 -0.77 12.39 16 28 H 0.14 2.48 8.04 -2.39 -0.02 2.46 16 29 H 0.13 2.46 6.73 -2.39 -0.02 2.45 16 30 H 0.15 2.89 8.05 -2.91 -0.02 2.87 16 31 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.19 2.82 8.06 -2.91 -0.02 2.79 16 34 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 35 H 0.14 3.49 6.57 -2.91 -0.02 3.47 16 Total: -1.00 -78.42 308.20 2.16 -76.26 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.35 Total: 20.11 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 4.09 Total: -6.98 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -4.26 Total: -103.46 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.05 Total: -29.60 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Total: -78.42 2.16 -76.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635343063.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.006 kcal (2) G-P(sol) polarization free energy of solvation -78.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds