Wall clock time and date at job start Mon Mar 30 2020 01:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00169 * 2 1 4 4 H 1.48497 * 109.47068 * 270.00207 * 3 2 1 5 5 H 1.48501 * 109.47161 * 29.99816 * 3 2 1 6 6 H 1.48494 * 109.47103 * 150.00187 * 3 2 1 7 7 C 1.37880 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99483 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00092 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.46939 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00306 * 179.97438 * 10 9 7 12 12 O 1.21730 * 119.99544 * 359.97438 * 11 10 9 13 13 C 1.46389 * 120.00506 * 180.02562 * 11 10 9 14 14 N 1.37636 * 126.32723 * 0.02562 * 13 11 10 15 15 H 0.96999 * 125.54620 * 0.02562 * 14 13 11 16 16 C 1.35642 * 108.89977 * 179.97438 * 14 13 11 17 17 C 1.35118 * 109.21914 * 0.26980 * 16 14 13 18 18 C 1.39097 * 126.32956 * 179.97438 * 13 11 10 19 19 C 1.48175 * 126.63272 * 0.03862 * 18 13 11 20 20 C 1.39450 * 120.12919 * 309.72267 * 19 18 13 21 21 C 1.37993 * 119.86340 * 179.79071 * 20 19 18 22 22 C 1.38338 * 120.13308 * 0.46564 * 21 20 19 23 23 C 1.38341 * 120.26715 * 359.78498 * 22 21 20 24 24 C 1.37993 * 120.12971 * 359.97438 * 23 22 21 25 25 H 0.97007 * 120.00117 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47422 * 59.99672 * 9 7 2 27 27 H 1.09002 * 109.46756 * 299.98925 * 9 7 2 28 28 H 0.97001 * 120.00322 * 359.97438 * 10 9 7 29 29 H 1.08002 * 125.38596 * 179.97438 * 16 14 13 30 30 H 1.08004 * 126.09614 * 179.73823 * 17 16 14 31 31 H 1.07993 * 120.06959 * 0.02562 * 20 19 18 32 32 H 1.08001 * 119.93481 * 180.25452 * 21 20 19 33 33 H 1.08001 * 119.87176 * 179.76489 * 22 21 20 34 34 H 1.07997 * 119.93688 * 179.97438 * 23 22 21 35 35 H 1.08003 * 120.06533 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0001 11 6 5.3249 -2.8217 -0.0001 12 8 6.1159 -1.8964 -0.0006 13 6 5.8128 -4.2018 -0.0008 14 7 5.0392 -5.3402 -0.0019 15 1 4.0695 -5.3629 -0.0028 16 6 5.8536 -6.4249 -0.0028 17 6 7.1409 -6.0145 0.0037 18 6 7.1440 -4.6052 -0.0015 19 6 8.3350 -3.7236 -0.0008 20 6 8.4389 -2.6867 -0.9274 21 6 9.5484 -1.8663 -0.9191 22 6 10.5609 -2.0769 -0.0002 23 6 10.4659 -3.1071 0.9181 24 6 9.3589 -3.9311 0.9228 25 1 -0.4851 0.8401 -0.0004 26 1 3.8746 -0.6808 0.8904 27 1 3.8751 -0.6798 -0.8896 28 1 3.3695 -3.3126 -0.0001 29 1 5.5249 -7.4537 -0.0034 30 1 8.0122 -6.6528 0.0086 31 1 7.6508 -2.5237 -1.6476 32 1 9.6281 -1.0604 -1.6336 33 1 11.4291 -1.4346 0.0001 34 1 11.2596 -3.2670 1.6328 35 1 9.2857 -4.7348 1.6405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635343386.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:38 Heat of formation + Delta-G solvation = 29.552140 kcal Electronic energy + Delta-G solvation = -19493.960820 eV Core-core repulsion = 16457.277053 eV Total energy + Delta-G solvation = -3036.683767 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.21326 -38.55053 -38.41151 -34.46204 -32.64485 -32.20395 -30.66819 -30.04850 -28.78710 -27.50801 -23.49823 -22.36915 -22.28124 -21.21935 -20.22714 -19.20400 -18.80015 -16.73607 -16.37728 -15.44267 -15.23695 -15.03282 -14.72113 -14.44877 -14.07818 -13.67154 -13.49882 -13.19730 -13.07844 -12.74723 -12.70012 -12.37284 -12.14982 -12.10712 -11.09404 -10.95088 -10.83187 -10.79370 -10.02255 -9.61702 -9.53859 -9.19123 -8.84195 -8.60766 -8.48265 -8.23947 -7.79759 -6.27364 -4.30394 1.26514 1.72056 1.89055 2.80766 3.14714 3.23382 3.30400 3.38969 3.77374 3.89155 4.12657 4.28907 4.88897 5.08346 5.10100 5.14697 5.23001 5.29970 5.37693 5.43950 5.73501 5.78582 5.84294 6.12938 6.25989 6.33193 6.59138 6.67345 6.75942 6.80207 6.87685 6.99567 7.01056 7.11825 7.26831 7.30371 7.41315 8.05702 8.39481 8.66948 8.79800 9.32239 10.84434 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.005132 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.042537 B = 5454.886984 C = 6687.299636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.078 0.922 9 C 0.222 3.778 10 N -0.705 5.705 11 C 0.568 3.432 12 O -0.531 6.531 13 C -0.025 4.025 14 N -0.537 5.537 15 H 0.420 0.580 16 C 0.014 3.986 17 C -0.196 4.196 18 C -0.058 4.058 19 C -0.011 4.011 20 C -0.062 4.062 21 C -0.125 4.125 22 C -0.124 4.124 23 C -0.132 4.132 24 C -0.108 4.108 25 H 0.268 0.732 26 H 0.028 0.972 27 H 0.024 0.976 28 H 0.389 0.611 29 H 0.170 0.830 30 H 0.142 0.858 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.697 -11.919 -0.236 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.096 0.904 9 C 0.100 3.900 10 N -0.353 5.353 11 C 0.353 3.647 12 O -0.409 6.409 13 C -0.139 4.139 14 N -0.132 5.132 15 H 0.258 0.742 16 C -0.120 4.120 17 C -0.221 4.221 18 C -0.067 4.067 19 C -0.011 4.011 20 C -0.080 4.080 21 C -0.143 4.143 22 C -0.142 4.142 23 C -0.150 4.150 24 C -0.126 4.126 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.222 0.778 29 H 0.187 0.813 30 H 0.160 0.840 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 15.878 -11.056 -0.232 19.349 hybrid contribution -0.651 0.438 0.051 0.786 sum 15.227 -10.618 -0.181 18.564 Atomic orbital electron populations 1.69874 1.06236 1.27538 1.49187 1.24782 0.94792 0.99209 0.93710 0.86816 0.80635 0.83147 0.79135 1.19764 1.20826 1.18401 1.21054 0.88430 0.95202 1.53742 0.90400 1.19525 0.95270 0.78124 0.97049 1.46125 1.05212 1.11170 1.72765 1.17077 0.83181 0.86248 0.78160 1.90840 1.55118 1.43829 1.51091 1.20821 0.90778 0.86679 1.15638 1.42037 1.09183 1.05553 1.56460 0.74241 1.21839 0.90379 0.91930 1.07897 1.20833 0.96350 0.93503 1.11391 1.18522 0.89993 0.92796 1.05391 1.18076 0.92165 0.95037 0.95871 1.21162 0.96287 0.92944 0.97632 1.21024 0.94319 0.99483 0.99517 1.21096 0.98869 0.98123 0.96150 1.20930 0.98166 0.96422 0.99481 1.21095 0.93547 0.99710 0.98270 0.92178 0.95423 0.95860 0.77809 0.81275 0.84002 0.86175 0.86421 0.86692 0.86528 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.55 -14.77 9.83 -34.44 -0.34 -15.11 16 8 H 0.08 2.18 7.84 -52.49 -0.41 1.76 16 9 C 0.22 5.41 4.50 -5.19 -0.02 5.39 16 10 N -0.70 -14.21 5.54 -62.89 -0.35 -14.56 16 11 C 0.57 11.24 7.76 -12.98 -0.10 11.14 16 12 O -0.53 -12.06 13.42 5.16 0.07 -11.99 16 13 C -0.02 -0.40 7.07 -81.66 -0.58 -0.97 16 14 N -0.54 -6.42 5.98 -9.24 -0.06 -6.48 16 15 H 0.42 4.02 8.18 -40.82 -0.33 3.68 16 16 C 0.01 0.15 11.86 -16.98 -0.20 -0.05 16 17 C -0.20 -2.36 10.73 -39.67 -0.43 -2.79 16 18 C -0.06 -0.90 5.67 -104.48 -0.59 -1.49 16 19 C -0.01 -0.17 5.27 -104.91 -0.55 -0.73 16 20 C -0.06 -1.02 7.63 -39.22 -0.30 -1.32 16 21 C -0.13 -1.82 10.03 -39.63 -0.40 -2.22 16 22 C -0.12 -1.61 10.04 -39.51 -0.40 -2.00 16 23 C -0.13 -1.67 10.03 -39.63 -0.40 -2.07 16 24 C -0.11 -1.50 9.73 -39.22 -0.38 -1.88 16 25 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 27 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 28 H 0.39 6.76 7.45 -40.82 -0.30 6.46 16 29 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 31 H 0.12 2.10 7.35 -52.49 -0.39 1.72 16 32 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 304.99 15.07 4.60 4.60 Total: -1.00 -32.90 304.99 -8.32 -41.23 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -3.91 Total: 7.98 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -4.78 Total: -11.99 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.37 Total: -46.44 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.07 Total: -11.99 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.90 -8.32 -41.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635343386.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.778 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds