Wall clock time and date at job start Mon Mar 30 2020 01:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00169 * 2 1 4 4 H 1.48497 * 109.47068 * 270.00207 * 3 2 1 5 5 H 1.48501 * 109.47161 * 29.99816 * 3 2 1 6 6 H 1.48494 * 109.47103 * 150.00187 * 3 2 1 7 7 C 1.37880 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99483 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00092 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.46939 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00306 * 179.97438 * 10 9 7 12 12 O 1.21730 * 119.99544 * 359.97438 * 11 10 9 13 13 C 1.46389 * 120.00506 * 180.02562 * 11 10 9 14 14 N 1.37636 * 126.32723 * 0.02562 * 13 11 10 15 15 H 0.96999 * 125.54620 * 0.02562 * 14 13 11 16 16 C 1.35642 * 108.89977 * 179.97438 * 14 13 11 17 17 C 1.35118 * 109.21914 * 0.26980 * 16 14 13 18 18 C 1.39097 * 126.32956 * 179.97438 * 13 11 10 19 19 C 1.48175 * 126.63272 * 0.03862 * 18 13 11 20 20 C 1.39450 * 120.12919 * 309.72267 * 19 18 13 21 21 C 1.37993 * 119.86340 * 179.79071 * 20 19 18 22 22 C 1.38338 * 120.13308 * 0.46564 * 21 20 19 23 23 C 1.38341 * 120.26715 * 359.78498 * 22 21 20 24 24 C 1.37993 * 120.12971 * 359.97438 * 23 22 21 25 25 H 0.97007 * 120.00117 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47422 * 59.99672 * 9 7 2 27 27 H 1.09002 * 109.46756 * 299.98925 * 9 7 2 28 28 H 0.97001 * 120.00322 * 359.97438 * 10 9 7 29 29 H 1.08002 * 125.38596 * 179.97438 * 16 14 13 30 30 H 1.08004 * 126.09614 * 179.73823 * 17 16 14 31 31 H 1.07993 * 120.06959 * 0.02562 * 20 19 18 32 32 H 1.08001 * 119.93481 * 180.25452 * 21 20 19 33 33 H 1.08001 * 119.87176 * 179.76489 * 22 21 20 34 34 H 1.07997 * 119.93688 * 179.97438 * 23 22 21 35 35 H 1.08003 * 120.06533 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 -0.0001 11 6 5.3249 -2.8217 -0.0001 12 8 6.1159 -1.8964 -0.0006 13 6 5.8128 -4.2018 -0.0008 14 7 5.0392 -5.3402 -0.0019 15 1 4.0695 -5.3629 -0.0028 16 6 5.8536 -6.4249 -0.0028 17 6 7.1409 -6.0145 0.0037 18 6 7.1440 -4.6052 -0.0015 19 6 8.3350 -3.7236 -0.0008 20 6 8.4389 -2.6867 -0.9274 21 6 9.5484 -1.8663 -0.9191 22 6 10.5609 -2.0769 -0.0002 23 6 10.4659 -3.1071 0.9181 24 6 9.3589 -3.9311 0.9228 25 1 -0.4851 0.8401 -0.0004 26 1 3.8746 -0.6808 0.8904 27 1 3.8751 -0.6798 -0.8896 28 1 3.3695 -3.3126 -0.0001 29 1 5.5249 -7.4537 -0.0034 30 1 8.0122 -6.6528 0.0086 31 1 7.6508 -2.5237 -1.6476 32 1 9.6281 -1.0604 -1.6336 33 1 11.4291 -1.4346 0.0001 34 1 11.2596 -3.2670 1.6328 35 1 9.2857 -4.7348 1.6405 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635343386.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:37 Heat of formation + Delta-G solvation = 7.580762 kcal Electronic energy + Delta-G solvation = -19494.913571 eV Core-core repulsion = 16457.277053 eV Total energy + Delta-G solvation = -3037.636518 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.28116 -39.95446 -39.59226 -36.26197 -34.52489 -33.42262 -31.73936 -31.26889 -30.14415 -29.03418 -25.00107 -23.80240 -23.33711 -22.62657 -21.35273 -20.54649 -20.03616 -18.62898 -17.49024 -17.00496 -16.74583 -16.43318 -15.89832 -15.80199 -15.59804 -14.94327 -14.85992 -14.47261 -14.35153 -14.19885 -13.98220 -13.74818 -13.63557 -13.17585 -13.04333 -12.74500 -11.99654 -11.96499 -11.87217 -11.71659 -11.12822 -10.96086 -10.26614 -10.07865 -9.68987 -9.38312 -8.92530 -8.44540 -6.51868 0.11243 0.63409 0.80092 1.29607 1.32144 1.44772 1.85450 2.15903 2.24348 2.36206 2.39470 2.91268 3.04000 3.90190 4.01827 4.13810 4.20169 4.33626 4.35514 4.45355 4.67848 4.73571 4.80240 4.84388 4.96680 5.17333 5.18334 5.24534 5.28880 5.38586 5.58385 5.69371 5.72902 5.81737 5.92672 6.06155 6.21717 6.46667 6.54199 6.75706 7.10092 7.27808 8.69991 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.005132 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.042537 B = 5454.886984 C = 6687.299636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.030 3.970 3 Si 0.935 3.065 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.236 3.764 10 N -0.705 5.705 11 C 0.568 3.432 12 O -0.569 6.569 13 C -0.070 4.070 14 N -0.528 5.528 15 H 0.430 0.570 16 C 0.052 3.948 17 C -0.211 4.211 18 C -0.062 4.062 19 C -0.035 4.035 20 C -0.089 4.089 21 C -0.140 4.140 22 C -0.125 4.125 23 C -0.130 4.130 24 C -0.114 4.114 25 H 0.273 0.727 26 H 0.013 0.987 27 H 0.013 0.987 28 H 0.402 0.598 29 H 0.221 0.779 30 H 0.167 0.833 31 H 0.093 0.907 32 H 0.126 0.874 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.535 -13.652 0.459 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.170 4.170 3 Si 0.758 3.242 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.187 1.187 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.112 3.888 10 N -0.354 5.354 11 C 0.356 3.644 12 O -0.449 6.449 13 C -0.183 4.183 14 N -0.125 5.125 15 H 0.270 0.730 16 C -0.084 4.084 17 C -0.234 4.234 18 C -0.072 4.072 19 C -0.036 4.036 20 C -0.108 4.108 21 C -0.158 4.158 22 C -0.143 4.143 23 C -0.147 4.147 24 C -0.132 4.132 25 H 0.083 0.917 26 H 0.031 0.969 27 H 0.031 0.969 28 H 0.237 0.763 29 H 0.238 0.762 30 H 0.184 0.816 31 H 0.111 0.889 32 H 0.144 0.856 33 H 0.163 0.837 34 H 0.168 0.832 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 17.695 -12.816 0.459 21.853 hybrid contribution -1.162 0.820 -0.166 1.432 sum 16.532 -11.995 0.293 20.428 Atomic orbital electron populations 1.69965 1.07601 1.28693 1.50440 1.25546 0.95515 1.02528 0.93450 0.85896 0.79259 0.79487 0.79519 1.18918 1.19621 1.18675 1.21243 0.89701 0.94664 1.53007 0.92151 1.19100 0.93496 0.80421 0.95766 1.45895 1.06052 1.09890 1.73612 1.17542 0.82278 0.87795 0.76752 1.90804 1.55799 1.45595 1.52679 1.20220 0.91749 0.85861 1.20490 1.42053 1.09811 1.04847 1.55752 0.73022 1.22688 0.89439 0.93194 1.03082 1.21179 0.98217 0.91990 1.12022 1.18885 0.89474 0.94571 1.04251 1.18362 0.93299 0.95378 0.96524 1.21112 0.96662 0.94620 0.98363 1.21257 0.94460 0.99583 1.00525 1.21468 0.99099 0.98484 0.95267 1.21372 0.98437 0.95429 0.99486 1.21389 0.93302 1.00500 0.98003 0.91740 0.96939 0.96909 0.76342 0.76211 0.81577 0.88855 0.85554 0.83742 0.83168 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.21 13.96 21.45 0.30 -54.91 16 2 C 0.03 1.72 5.47 84.66 0.46 2.18 16 3 Si 0.93 44.37 27.47 68.60 1.88 46.26 16 4 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 6 H -0.26 -12.48 6.54 99.48 0.65 -11.83 16 7 C -0.55 -30.33 9.83 25.60 0.25 -30.07 16 8 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 9 C 0.24 11.79 4.50 85.63 0.38 12.18 16 10 N -0.71 -29.29 5.54 -471.09 -2.61 -31.90 16 11 C 0.57 23.25 7.76 86.36 0.67 23.92 16 12 O -0.57 -27.07 13.42 -4.45 -0.06 -27.13 16 13 C -0.07 -2.24 7.07 40.56 0.29 -1.95 16 14 N -0.53 -11.62 5.98 -183.14 -1.10 -12.71 16 15 H 0.43 7.45 8.18 -92.71 -0.76 6.69 16 16 C 0.05 0.86 11.86 83.39 0.99 1.84 16 17 C -0.21 -4.46 10.73 22.21 0.24 -4.22 16 18 C -0.06 -1.88 5.67 -19.77 -0.11 -1.99 16 19 C -0.04 -1.12 5.27 -20.05 -0.11 -1.22 16 20 C -0.09 -3.07 7.63 22.50 0.17 -2.89 16 21 C -0.14 -4.12 10.03 22.24 0.22 -3.90 16 22 C -0.13 -3.03 10.04 22.32 0.22 -2.80 16 23 C -0.13 -2.96 10.03 22.24 0.22 -2.74 16 24 C -0.11 -2.98 9.73 22.50 0.22 -2.76 16 25 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 26 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 27 H 0.01 0.67 7.57 -2.39 -0.02 0.66 16 28 H 0.40 14.27 7.45 -92.71 -0.69 13.58 16 29 H 0.22 1.35 8.06 -2.91 -0.02 1.32 16 30 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 31 H 0.09 3.58 7.35 -2.91 -0.02 3.56 16 32 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 33 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 34 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -73.92 304.99 2.17 -71.75 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -0.37 Total: 23.08 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 4.13 Total: -14.43 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -3.41 Total: -99.52 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.06 Total: -27.13 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.26 kcal Total: -73.92 2.17 -71.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635343386.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.331 kcal (2) G-P(sol) polarization free energy of solvation -73.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds