Wall clock time and date at job start Mon Mar 30 2020 01:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86800 * 119.99887 * 2 1 4 4 H 1.48502 * 109.47234 * 240.00447 * 3 2 1 5 5 H 1.48504 * 109.47370 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47497 * 119.99902 * 3 2 1 7 7 C 1.40041 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00479 * 180.02562 * 7 2 1 9 9 C 1.46377 * 120.00034 * 359.97438 * 7 2 1 10 10 O 1.21688 * 119.99731 * 359.97438 * 9 7 2 11 11 N 1.34778 * 119.99985 * 180.02562 * 9 7 2 12 12 C 1.46494 * 120.00032 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.47418 * 180.02562 * 12 11 9 14 14 C 1.50699 * 109.47545 * 180.02562 * 13 12 11 15 15 C 1.39358 * 119.56518 * 270.25235 * 14 13 12 16 16 C 1.36076 * 121.06412 * 180.24379 * 15 14 13 17 17 C 1.40593 * 119.74872 * 359.47893 * 16 15 14 18 18 N 1.33684 * 121.07053 * 180.29968 * 17 16 15 19 19 C 1.31092 * 121.31971 * 180.02562 * 18 17 16 20 20 C 1.39327 * 121.74684 * 359.96018 * 19 18 17 21 21 C 1.36581 * 119.93663 * 0.02562 * 20 19 18 22 22 C 1.40770 * 118.15310 * 0.02562 * 21 20 19 23 23 C 1.36147 * 119.56460 * 89.99656 * 14 13 12 24 24 H 0.97002 * 120.00044 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00024 * 0.02562 * 11 9 7 26 26 H 1.09003 * 109.47171 * 60.00070 * 12 11 9 27 27 H 1.09003 * 109.47180 * 300.00586 * 12 11 9 28 28 H 1.08996 * 109.47323 * 60.00087 * 13 12 11 29 29 H 1.08998 * 109.46851 * 300.00187 * 13 12 11 30 30 H 1.07995 * 119.46796 * 0.02562 * 15 14 13 31 31 H 1.08002 * 120.12853 * 179.76219 * 16 15 14 32 32 H 1.07997 * 119.12172 * 179.97438 * 19 18 17 33 33 H 1.07998 * 120.03184 * 179.97438 * 20 19 18 34 34 H 1.08002 * 120.91940 * 179.97438 * 21 20 19 35 35 H 1.07996 * 120.19323 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6965 -1.2126 5 1 1.2757 2.7465 -0.0006 6 1 3.0945 1.6965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4804 0.0004 11 7 1.9491 -3.6476 -0.0005 12 6 1.2167 -4.9164 0.0000 13 6 2.2109 -6.0792 0.0005 14 6 1.4575 -7.3844 0.0005 15 6 1.1087 -7.9770 1.2126 16 6 0.4328 -9.1575 1.2482 17 6 0.0680 -9.7891 0.0462 18 7 -0.6015 -10.9462 0.0503 19 6 -0.9435 -11.5395 -1.0675 20 6 -0.6291 -10.9968 -2.3116 21 6 0.0537 -9.8163 -2.3873 22 6 0.4202 -9.1826 -1.1849 23 6 1.1220 -7.9663 -1.1837 24 1 -0.4850 0.8401 0.0004 25 1 2.9191 -3.6476 -0.0002 26 1 0.5897 -4.9743 -0.8897 27 1 0.5903 -4.9739 0.8902 28 1 2.8375 -6.0212 0.8905 29 1 2.8375 -6.0219 -0.8894 30 1 1.3823 -7.4934 2.1386 31 1 0.1734 -9.6054 2.1961 32 1 -1.4836 -12.4737 -1.0227 33 1 -0.9242 -11.5094 -3.2151 34 1 0.3060 -9.3815 -3.3432 35 1 1.3946 -7.4956 -2.1167 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001644782388.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:09 Heat of formation + Delta-G solvation = -22.329506 kcal Electronic energy + Delta-G solvation = -18762.528171 eV Core-core repulsion = 15723.594647 eV Total energy + Delta-G solvation = -3038.933524 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.77044 -39.53792 -38.50910 -35.73207 -34.56990 -34.41049 -32.81953 -31.20392 -29.65448 -27.99898 -25.29612 -24.70908 -23.20465 -22.71058 -21.72934 -19.29366 -18.90759 -17.85216 -17.71047 -17.31310 -16.33845 -16.05302 -15.90904 -15.40702 -15.32817 -15.15738 -14.85446 -14.40154 -14.06020 -13.86432 -13.81172 -13.29987 -13.11175 -12.77274 -12.64452 -12.56749 -12.28710 -12.22366 -12.03259 -11.99424 -11.52517 -10.91376 -10.46964 -9.90040 -9.66054 -9.49485 -9.19290 -8.28618 -6.85587 -0.55291 -0.16422 1.03091 1.41246 1.44899 1.56728 1.93400 2.25874 2.47549 3.04917 3.17701 3.38181 3.61690 3.64180 3.82192 3.86887 4.02170 4.08439 4.19316 4.26016 4.31898 4.45819 4.58280 4.65898 4.84204 4.89923 5.07407 5.08809 5.11518 5.16957 5.32275 5.33876 5.58610 5.61678 5.87838 5.90133 6.24725 6.26796 6.86929 6.94591 7.56814 8.49670 8.67818 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.044250 B = 0.003026 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.611757 B = 9251.893958 C = 9386.513131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.026 3.974 3 Si 1.000 3.000 4 H -0.253 1.253 5 H -0.276 1.276 6 H -0.253 1.253 7 C -0.573 4.573 8 H 0.091 0.909 9 C 0.535 3.465 10 O -0.636 6.636 11 N -0.755 5.755 12 C 0.143 3.857 13 C -0.074 4.074 14 C -0.082 4.082 15 C -0.094 4.094 16 C -0.109 4.109 17 C 0.097 3.903 18 N -0.508 5.508 19 C 0.122 3.878 20 C -0.172 4.172 21 C -0.064 4.064 22 C -0.120 4.120 23 C -0.097 4.097 24 H 0.274 0.726 25 H 0.398 0.602 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.189 0.811 33 H 0.174 0.826 34 H 0.163 0.837 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.082 -20.101 -4.064 21.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.189 4.189 3 Si 0.819 3.181 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.177 1.177 7 C -0.610 4.610 8 H 0.109 0.891 9 C 0.339 3.661 10 O -0.524 6.524 11 N -0.410 5.410 12 C 0.018 3.982 13 C -0.111 4.111 14 C -0.082 4.082 15 C -0.114 4.114 16 C -0.127 4.127 17 C -0.023 4.023 18 N -0.217 5.217 19 C -0.050 4.050 20 C -0.192 4.192 21 C -0.090 4.090 22 C -0.122 4.122 23 C -0.115 4.115 24 H 0.084 0.916 25 H 0.233 0.767 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.162 0.838 31 H 0.160 0.840 32 H 0.206 0.794 33 H 0.191 0.809 34 H 0.181 0.819 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.866 -20.336 -3.180 20.943 hybrid contribution 0.455 1.067 -0.611 1.311 sum 4.321 -19.269 -3.792 20.108 Atomic orbital electron populations 1.70199 1.09650 1.29015 1.36521 1.27031 0.95529 1.05141 0.91185 0.85037 0.78137 0.74520 0.80371 1.17679 1.20097 1.17720 1.21434 0.94867 0.89987 1.54708 0.89091 1.18664 0.86827 0.84520 0.76074 1.90557 1.16446 1.88063 1.57301 1.45790 1.09454 1.04575 1.81155 1.20855 0.94567 0.83781 0.98962 1.20715 0.96542 0.88675 1.05191 1.19642 0.98933 0.96196 0.93477 1.21076 0.96976 0.94737 0.98618 1.20943 0.98929 0.95572 0.97294 1.19165 0.97115 0.92538 0.93513 1.68049 1.12232 1.08820 1.32562 1.23612 0.94405 0.99433 0.87546 1.22278 0.99596 0.96774 1.00528 1.21889 0.94535 0.94776 0.97808 1.19100 1.01144 0.97077 0.94883 1.21138 0.97446 0.93956 0.98981 0.91595 0.76742 0.95354 0.95405 0.88656 0.88642 0.83791 0.83999 0.79433 0.80861 0.81948 0.83647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.13 11.83 21.83 0.26 -50.87 16 2 C 0.03 1.46 5.50 85.30 0.47 1.92 16 3 Si 1.00 40.79 29.56 68.60 2.03 42.82 16 4 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 5 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 7 C -0.57 -32.49 9.54 24.83 0.24 -32.26 16 8 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 9 C 0.53 31.39 7.75 86.36 0.67 32.06 16 10 O -0.64 -43.66 15.02 -4.31 -0.06 -43.73 16 11 N -0.75 -33.57 5.55 -467.42 -2.59 -36.16 16 12 C 0.14 5.52 5.66 86.38 0.49 6.01 16 13 C -0.07 -1.91 5.43 29.85 0.16 -1.75 16 14 C -0.08 -2.10 5.10 -20.08 -0.10 -2.21 16 15 C -0.09 -2.35 9.58 22.04 0.21 -2.14 16 16 C -0.11 -2.81 9.98 22.34 0.22 -2.59 16 17 C 0.10 2.64 6.60 40.29 0.27 2.91 16 18 N -0.51 -12.96 10.34 -188.64 -1.95 -14.91 16 19 C 0.12 2.18 11.15 85.07 0.95 3.13 16 20 C -0.17 -2.53 10.03 22.14 0.22 -2.31 16 21 C -0.06 -1.17 9.90 22.50 0.22 -0.95 16 22 C -0.12 -2.96 5.74 -21.28 -0.12 -3.08 16 23 C -0.10 -2.36 9.38 22.32 0.21 -2.15 16 24 H 0.27 15.42 8.29 -92.71 -0.77 14.65 16 25 H 0.40 14.67 8.45 -92.71 -0.78 13.89 16 26 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.09 2.16 8.08 -2.39 -0.02 2.14 16 29 H 0.10 2.14 8.07 -2.39 -0.02 2.12 16 30 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 32 H 0.19 1.92 8.06 -2.91 -0.02 1.89 16 33 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 34 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -82.53 310.33 2.11 -80.42 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.33 Total: 25.83 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 4.10 Total: -3.40 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -4.29 Total: -101.94 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.06 Total: -43.73 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -82.53 2.11 -80.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644782388.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.093 kcal (2) G-P(sol) polarization free energy of solvation -82.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds