Wall clock time and date at job start Mon Mar 30 2020 01:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30642 * 128.64236 * 2 1 4 4 O 1.20839 * 109.61891 * 180.25752 * 3 2 1 5 5 N 1.20905 * 115.90819 * 0.02562 * 4 3 2 6 6 C 1.31596 * 109.18088 * 0.02562 * 5 4 3 7 7 C 1.48280 * 128.71296 * 180.02562 * 6 5 4 8 8 O 1.21499 * 119.99791 * 180.02562 * 7 6 5 9 9 N 1.34768 * 119.99826 * 359.97438 * 7 6 5 10 10 C 1.46504 * 119.99797 * 180.02562 * 9 7 6 11 11 C 1.53011 * 109.46867 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47142 * 60.00011 * 11 10 9 13 13 O 1.42901 * 109.46904 * 299.99865 * 11 10 9 14 14 C 1.53005 * 109.46671 * 180.02562 * 11 10 9 15 15 N 1.46498 * 109.46695 * 185.00128 * 14 11 10 16 16 C 1.36935 * 120.00032 * 179.97438 * 15 14 11 17 17 H 1.08000 * 119.99947 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00107 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00065 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99776 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47067 * 60.00666 * 20 18 16 22 22 H 1.48507 * 109.47030 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47509 * 300.00227 * 20 18 16 24 24 H 1.09002 * 109.47143 * 269.67435 * 1 2 3 25 25 H 1.08999 * 109.47218 * 29.67678 * 1 2 3 26 26 H 1.08999 * 109.47414 * 149.67725 * 1 2 3 27 27 H 0.97006 * 120.00499 * 0.02562 * 9 7 6 28 28 H 1.08996 * 109.47381 * 299.99829 * 10 9 7 29 29 H 1.08994 * 109.47230 * 60.00356 * 10 9 7 30 30 H 0.96698 * 113.99626 * 300.00039 * 13 11 10 31 31 H 1.09002 * 109.46702 * 304.99294 * 14 11 10 32 32 H 1.08993 * 109.47252 * 64.99942 * 14 11 10 33 33 H 0.97000 * 120.00316 * 359.97438 * 15 14 11 34 34 H 0.96999 * 120.00128 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4652 0.6265 -0.0051 5 7 3.6101 -0.5738 -0.0095 6 6 2.4280 -1.1520 -0.0079 7 6 2.1033 -2.5989 -0.0112 8 8 0.9436 -2.9612 -0.0096 9 7 3.0946 -3.5119 -0.0171 10 6 2.7738 -4.9413 -0.0209 11 6 4.0697 -5.7548 -0.0266 12 1 4.6528 -5.5156 0.8627 13 8 4.8284 -5.4337 -1.1943 14 6 3.7347 -7.2477 -0.0313 15 7 4.9706 -8.0258 0.0837 16 6 4.9191 -9.3941 0.1012 17 1 3.9673 -9.8996 0.0308 18 6 6.0902 -10.1314 0.2096 19 7 7.2501 -9.5154 0.2960 20 14 6.0198 -11.9979 0.2342 21 1 5.4035 -12.4867 -1.0253 22 1 7.3955 -12.5436 0.3569 23 1 5.2045 -12.4474 1.3912 24 1 -0.3633 -0.0058 1.0277 25 1 -0.3633 0.8929 -0.5088 26 1 -0.3634 -0.8871 -0.5188 27 1 4.0205 -3.2226 -0.0188 28 1 2.1955 -5.1863 0.8699 29 1 2.1904 -5.1804 -0.9100 30 1 4.3702 -5.6212 -2.0248 31 1 3.0819 -7.4761 0.8113 32 1 3.2293 -7.5038 -0.9624 33 1 5.8254 -7.5718 0.1473 34 1 8.0685 -10.0306 0.3713 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699074141.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:45 Heat of formation + Delta-G solvation = 36.838981 kcal Electronic energy + Delta-G solvation = -19873.034281 eV Core-core repulsion = 16425.817232 eV Total energy + Delta-G solvation = -3447.217049 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.21854 -40.04709 -37.78178 -35.59854 -35.09054 -34.51274 -34.07810 -31.40005 -30.03515 -29.21583 -26.58761 -24.89676 -22.97885 -22.61570 -21.56569 -20.89573 -19.38737 -18.86098 -17.50448 -17.19163 -16.58707 -16.16725 -15.64459 -14.98959 -14.58606 -14.50057 -14.26215 -13.91810 -13.73663 -13.67277 -13.06040 -12.87329 -12.44306 -12.34153 -12.21352 -11.97324 -11.50133 -11.01411 -10.83340 -10.80795 -10.70732 -10.65623 -10.24622 -9.87398 -9.61958 -9.43134 -8.94232 -6.98925 -5.79731 -3.10069 0.42344 0.95319 2.33333 2.62602 3.01821 3.09559 3.41806 3.45969 3.47383 3.55883 4.31882 4.46109 4.48643 4.63217 4.71541 4.78315 5.04698 5.09337 5.19250 5.48856 5.51863 5.55943 5.61024 5.83042 5.99779 6.16823 6.42989 6.58618 7.04293 7.63591 7.65712 7.85452 8.09354 8.38084 9.49744 10.05417 10.40863 11.42460 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.050192 B = 0.002963 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.728362 B = 9446.901568 C = 9880.441386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.062 3.938 3 N -0.359 5.359 4 O 0.343 5.657 5 N -0.316 5.316 6 C -0.043 4.043 7 C 0.604 3.396 8 O -0.516 6.516 9 N -0.698 5.698 10 C 0.088 3.912 11 C 0.088 3.912 12 H 0.107 0.893 13 O -0.551 6.551 14 C 0.128 3.872 15 N -0.726 5.726 16 C -0.247 4.247 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.909 3.091 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.414 0.586 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.374 0.626 31 H 0.030 0.970 32 H 0.024 0.976 33 H 0.389 0.611 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.176 19.560 -1.111 23.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 N -0.085 5.085 4 O 0.118 5.882 5 N -0.036 5.036 6 C -0.209 4.209 7 C 0.386 3.614 8 O -0.390 6.390 9 N -0.350 5.350 10 C -0.035 4.035 11 C 0.028 3.972 12 H 0.125 0.875 13 O -0.356 6.356 14 C -0.001 4.001 15 N -0.371 5.371 16 C -0.378 4.378 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.577 5.577 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 H 0.112 0.888 25 H 0.106 0.894 26 H 0.121 0.879 27 H 0.250 0.750 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.221 0.779 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.223 0.777 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.652 19.950 -0.664 23.113 hybrid contribution -0.305 -1.488 -0.312 1.551 sum -11.957 18.462 -0.975 22.017 Atomic orbital electron populations 1.20354 0.82851 1.05289 1.04827 1.26256 1.00400 0.85109 0.98675 1.75072 0.91174 1.24011 1.18213 1.85081 1.23294 1.16610 1.63249 1.75408 1.22971 0.92828 1.12405 1.26103 0.88141 0.98490 1.08179 1.16437 0.85683 0.81486 0.77820 1.90826 1.18843 1.79510 1.49818 1.45786 1.09872 1.06622 1.72717 1.22294 0.99129 0.78235 1.03882 1.22436 0.90427 0.94490 0.89866 0.87501 1.86605 1.45863 1.87485 1.15674 1.21187 0.91552 0.88424 0.98894 1.42226 1.02949 1.03133 1.88770 1.19163 0.92950 0.82447 1.43209 0.91220 1.24770 0.95293 0.98061 1.02634 1.69663 0.97001 1.34441 1.56644 0.86247 0.76544 0.85376 0.77858 1.21212 1.21615 1.21210 0.88758 0.89400 0.87918 0.75006 0.89632 0.90277 0.77904 0.95273 0.95811 0.77680 0.93352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.22 36.00 0.37 -0.13 16 2 C 0.06 0.59 7.79 -79.33 -0.62 -0.03 16 3 N -0.36 -3.63 12.22 33.76 0.41 -3.21 16 4 O 0.34 3.53 11.65 27.26 0.32 3.85 16 5 N -0.32 -3.46 12.13 33.49 0.41 -3.05 16 6 C -0.04 -0.48 7.56 -80.07 -0.61 -1.08 16 7 C 0.60 7.26 7.85 -12.13 -0.10 7.16 16 8 O -0.52 -7.11 15.96 5.37 0.09 -7.02 16 9 N -0.70 -7.95 5.45 -61.11 -0.33 -8.29 16 10 C 0.09 1.05 5.34 -4.03 -0.02 1.02 16 11 C 0.09 1.27 3.09 -26.72 -0.08 1.19 16 12 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 13 O -0.55 -8.36 13.03 -35.23 -0.46 -8.82 16 14 C 0.13 2.37 5.90 -4.04 -0.02 2.35 16 15 N -0.73 -18.02 5.55 -59.91 -0.33 -18.35 16 16 C -0.25 -6.84 9.99 -15.06 -0.15 -6.99 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -28.14 13.06 55.49 0.72 -27.41 16 20 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.10 0.73 7.32 -51.93 -0.38 0.35 16 27 H 0.41 4.56 8.20 -40.82 -0.33 4.23 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.37 4.60 9.04 45.56 0.41 5.01 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.39 10.37 7.67 -40.82 -0.31 10.06 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 308.51 15.07 4.65 4.65 Total: -1.00 -32.25 308.51 -4.00 -36.25 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -3.12 Total: 11.12 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.33 Total: 3.08 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: 0.88 Total: -60.32 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.06 Total: -12.00 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.25 -4.00 -36.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699074141.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.090 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds