Wall clock time and date at job start Mon Mar 30 2020 01:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30642 * 128.64236 * 2 1 4 4 O 1.20839 * 109.61891 * 180.25752 * 3 2 1 5 5 N 1.20905 * 115.90819 * 0.02562 * 4 3 2 6 6 C 1.31596 * 109.18088 * 0.02562 * 5 4 3 7 7 C 1.48280 * 128.71296 * 180.02562 * 6 5 4 8 8 O 1.21499 * 119.99791 * 180.02562 * 7 6 5 9 9 N 1.34768 * 119.99826 * 359.97438 * 7 6 5 10 10 C 1.46504 * 119.99797 * 180.02562 * 9 7 6 11 11 C 1.53011 * 109.46867 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47142 * 60.00011 * 11 10 9 13 13 O 1.42901 * 109.46904 * 299.99865 * 11 10 9 14 14 C 1.53005 * 109.46671 * 180.02562 * 11 10 9 15 15 N 1.46498 * 109.46695 * 185.00128 * 14 11 10 16 16 C 1.36935 * 120.00032 * 179.97438 * 15 14 11 17 17 H 1.08000 * 119.99947 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00107 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00065 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99776 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47067 * 60.00666 * 20 18 16 22 22 H 1.48507 * 109.47030 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47509 * 300.00227 * 20 18 16 24 24 H 1.09002 * 109.47143 * 269.67435 * 1 2 3 25 25 H 1.08999 * 109.47218 * 29.67678 * 1 2 3 26 26 H 1.08999 * 109.47414 * 149.67725 * 1 2 3 27 27 H 0.97006 * 120.00499 * 0.02562 * 9 7 6 28 28 H 1.08996 * 109.47381 * 299.99829 * 10 9 7 29 29 H 1.08994 * 109.47230 * 60.00356 * 10 9 7 30 30 H 0.96698 * 113.99626 * 300.00039 * 13 11 10 31 31 H 1.09002 * 109.46702 * 304.99294 * 14 11 10 32 32 H 1.08993 * 109.47252 * 64.99942 * 14 11 10 33 33 H 0.97000 * 120.00316 * 359.97438 * 15 14 11 34 34 H 0.96999 * 120.00128 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4652 0.6265 -0.0051 5 7 3.6101 -0.5738 -0.0095 6 6 2.4280 -1.1520 -0.0079 7 6 2.1033 -2.5989 -0.0112 8 8 0.9436 -2.9612 -0.0096 9 7 3.0946 -3.5119 -0.0171 10 6 2.7738 -4.9413 -0.0209 11 6 4.0697 -5.7548 -0.0266 12 1 4.6528 -5.5156 0.8627 13 8 4.8284 -5.4337 -1.1943 14 6 3.7347 -7.2477 -0.0313 15 7 4.9706 -8.0258 0.0837 16 6 4.9191 -9.3941 0.1012 17 1 3.9673 -9.8996 0.0308 18 6 6.0902 -10.1314 0.2096 19 7 7.2501 -9.5154 0.2960 20 14 6.0198 -11.9979 0.2342 21 1 5.4035 -12.4867 -1.0253 22 1 7.3955 -12.5436 0.3569 23 1 5.2045 -12.4474 1.3912 24 1 -0.3633 -0.0058 1.0277 25 1 -0.3633 0.8929 -0.5088 26 1 -0.3634 -0.8871 -0.5188 27 1 4.0205 -3.2226 -0.0188 28 1 2.1955 -5.1863 0.8699 29 1 2.1904 -5.1804 -0.9100 30 1 4.3702 -5.6212 -2.0248 31 1 3.0819 -7.4761 0.8113 32 1 3.2293 -7.5038 -0.9624 33 1 5.8254 -7.5718 0.1473 34 1 8.0685 -10.0306 0.3713 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699074141.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:44 Heat of formation + Delta-G solvation = 9.627136 kcal Electronic energy + Delta-G solvation = -19874.214275 eV Core-core repulsion = 16425.817232 eV Total energy + Delta-G solvation = -3448.397043 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.01629 -41.02689 -39.01466 -36.39150 -36.11199 -35.89566 -35.33117 -33.21723 -31.02609 -30.26757 -27.82227 -26.26440 -24.36971 -23.64439 -22.81914 -21.88283 -20.19131 -19.80070 -19.18604 -18.32055 -17.79542 -17.27906 -16.72146 -16.44448 -16.05090 -15.60749 -15.30125 -15.01486 -14.86121 -14.46010 -14.35711 -14.23597 -13.89260 -13.32243 -13.04909 -12.96980 -12.94502 -12.71551 -12.32869 -12.20895 -12.02395 -11.82340 -11.70223 -11.43106 -11.01904 -10.94625 -10.38489 -9.01497 -7.94955 -5.24640 -0.43164 0.19801 1.42269 1.48326 1.50982 1.57242 1.70694 2.23399 2.32047 2.55454 2.72944 3.35999 3.45066 3.51042 3.55973 3.68135 3.98447 4.06093 4.17805 4.37924 4.58881 4.59235 4.65626 4.70690 4.93951 5.01204 5.10803 5.20203 5.48235 6.10209 6.26113 6.70347 6.80290 7.29431 7.33144 8.08811 8.30762 9.28154 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.050192 B = 0.002963 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.728362 B = 9446.901568 C = 9880.441386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.068 3.932 3 N -0.365 5.365 4 O 0.345 5.655 5 N -0.321 5.321 6 C -0.057 4.057 7 C 0.608 3.392 8 O -0.534 6.534 9 N -0.694 5.694 10 C 0.101 3.899 11 C 0.105 3.895 12 H 0.099 0.901 13 O -0.565 6.565 14 C 0.123 3.877 15 N -0.742 5.742 16 C -0.249 4.249 17 H 0.078 0.922 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.975 3.025 21 H -0.277 1.277 22 H -0.297 1.297 23 H -0.277 1.277 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.416 0.584 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.386 0.614 31 H 0.038 0.962 32 H 0.035 0.965 33 H 0.376 0.624 34 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.785 19.934 -1.267 24.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 N -0.093 5.093 4 O 0.119 5.881 5 N -0.040 5.040 6 C -0.222 4.222 7 C 0.390 3.610 8 O -0.409 6.409 9 N -0.346 5.346 10 C -0.023 4.023 11 C 0.045 3.955 12 H 0.117 0.883 13 O -0.372 6.372 14 C -0.004 4.004 15 N -0.385 5.385 16 C -0.381 4.381 17 H 0.096 0.904 18 C -0.269 4.269 19 N -0.619 5.619 20 Si 0.804 3.196 21 H -0.203 1.203 22 H -0.223 1.223 23 H -0.203 1.203 24 H 0.126 0.874 25 H 0.126 0.874 26 H 0.117 0.883 27 H 0.253 0.747 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.235 0.765 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.208 0.792 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.303 20.330 -0.832 24.310 hybrid contribution 0.126 -1.521 -0.280 1.552 sum -13.176 18.809 -1.112 22.992 Atomic orbital electron populations 1.20522 0.80820 1.06049 1.05915 1.26715 1.01495 0.84275 0.97276 1.75087 0.91112 1.24143 1.18913 1.85075 1.23570 1.16277 1.63183 1.75388 1.23195 0.93156 1.12275 1.26042 0.88659 0.98315 1.09211 1.16461 0.85350 0.81831 0.77321 1.90816 1.19446 1.79896 1.50777 1.45709 1.09988 1.06380 1.72483 1.22082 0.97387 0.78104 1.04684 1.22140 0.91437 0.92391 0.89555 0.88349 1.86583 1.46741 1.87387 1.16473 1.21411 0.89309 0.90288 0.99403 1.42436 1.04440 1.02791 1.88816 1.19620 0.93165 0.84050 1.41231 0.90365 1.25612 0.95114 1.02595 1.03541 1.69828 0.97466 1.35866 1.58784 0.85194 0.76137 0.80057 0.78247 1.20282 1.22301 1.20269 0.87352 0.87437 0.88290 0.74742 0.89067 0.89260 0.76456 0.94409 0.94703 0.79220 0.94003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.22 71.23 0.73 -0.12 16 2 C 0.07 1.21 7.79 45.18 0.35 1.56 16 3 N -0.37 -6.89 12.22 -51.81 -0.63 -7.52 16 4 O 0.34 6.76 11.65 140.85 1.64 8.40 16 5 N -0.32 -6.73 12.13 -52.06 -0.63 -7.37 16 6 C -0.06 -1.19 7.56 44.30 0.34 -0.85 16 7 C 0.61 13.76 7.85 86.92 0.68 14.44 16 8 O -0.53 -13.86 15.96 -3.71 -0.06 -13.92 16 9 N -0.69 -14.81 5.45 -465.55 -2.54 -17.35 16 10 C 0.10 2.21 5.34 86.38 0.46 2.67 16 11 C 0.10 2.91 3.09 30.60 0.09 3.01 16 12 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 13 O -0.56 -16.55 13.03 -148.98 -1.94 -18.49 16 14 C 0.12 4.40 5.90 86.38 0.51 4.90 16 15 N -0.74 -36.64 5.55 -343.45 -1.91 -38.54 16 16 C -0.25 -13.67 9.99 84.03 0.84 -12.83 16 17 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 18 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 19 N -0.97 -59.50 13.06 21.65 0.28 -59.21 16 20 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 22 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 24 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.10 1.23 7.32 -2.39 -0.02 1.22 16 27 H 0.42 8.70 8.20 -92.70 -0.76 7.94 16 28 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.39 8.96 9.04 -74.06 -0.67 8.29 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.38 20.27 7.67 -92.71 -0.71 19.56 16 34 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -67.90 308.51 -0.25 -68.15 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: -0.97 Total: 29.25 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 4.47 Total: 8.90 kcal Atomic # 7 Polarization: -124.57 SS G_CDS: -5.42 Total: -129.99 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.36 Total: -24.01 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -67.90 -0.25 -68.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699074141.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.782 kcal (2) G-P(sol) polarization free energy of solvation -67.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds