Wall clock time and date at job start Mon Mar 30 2020 00:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00303 * 2 1 4 4 H 1.48500 * 109.46976 * 239.99851 * 3 2 1 5 5 H 1.48497 * 109.46830 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47195 * 119.99875 * 3 2 1 7 7 C 1.38821 * 119.99618 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99374 * 198.80725 * 7 2 1 9 9 N 1.36931 * 120.00025 * 18.80007 * 7 2 1 10 10 C 1.46965 * 120.59561 * 206.88599 * 9 7 2 11 11 C 1.53371 * 108.63771 * 235.25456 * 10 9 7 12 12 N 1.46960 * 108.63487 * 310.57526 * 11 10 9 13 13 C 1.34776 * 120.59655 * 235.20502 * 12 11 10 14 14 O 1.21284 * 119.99836 * 5.11620 * 13 12 11 15 15 C 1.50697 * 119.99974 * 185.11803 * 13 12 11 16 16 H 1.08997 * 109.60717 * 317.00510 * 15 13 12 17 17 C 1.54392 * 109.41813 * 196.82464 * 15 13 12 18 18 C 1.55138 * 106.63721 * 192.95977 * 17 15 13 19 19 S 1.83456 * 102.38921 * 42.06361 * 18 17 15 20 20 C 1.54273 * 109.61446 * 77.34561 * 15 13 12 21 21 C 1.46974 * 118.81144 * 55.47799 * 12 11 10 22 22 C 1.46968 * 120.59364 * 26.91818 * 9 7 2 23 23 H 0.96997 * 119.99445 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.61000 * 115.50857 * 10 9 7 25 25 H 1.09005 * 109.74709 * 355.08216 * 10 9 7 26 26 H 1.08998 * 109.60832 * 190.83020 * 11 10 9 27 27 H 1.09004 * 109.60829 * 70.32001 * 11 10 9 28 28 H 1.08997 * 110.23133 * 73.61141 * 17 15 13 29 29 H 1.09006 * 109.97505 * 312.16583 * 17 15 13 30 30 H 1.09005 * 110.85262 * 283.79005 * 18 17 15 31 31 H 1.08996 * 110.85916 * 160.35052 * 18 17 15 32 32 H 1.09006 * 110.39974 * 28.90106 * 20 15 13 33 33 H 1.09000 * 110.40136 * 266.48893 * 20 15 13 34 34 H 1.08997 * 109.60840 * 64.26691 * 21 12 11 35 35 H 1.08996 * 109.60610 * 184.77770 * 21 12 11 36 36 H 1.08997 * 109.60770 * 244.49275 * 22 9 7 37 37 H 1.08998 * 109.61216 * 5.00147 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2023 0.0005 8 1 3.0471 -1.2271 0.3021 9 7 1.3803 -2.3566 -0.3811 10 6 1.8276 -3.6583 0.1341 11 6 2.1375 -4.5759 -1.0552 12 7 1.0024 -4.5354 -1.9878 13 6 0.3830 -5.6717 -2.3642 14 8 0.6996 -6.7296 -1.8628 15 6 -0.7030 -5.6276 -3.4081 16 1 -1.3592 -4.7784 -3.2175 17 6 -1.5209 -6.9359 -3.3535 18 6 -2.3854 -6.9733 -4.6411 19 16 -1.2084 -6.3914 -5.9225 20 6 -0.0701 -5.4888 -4.8082 21 6 0.5587 -3.2342 -2.5074 22 6 0.2453 -2.3161 -1.3138 23 1 -0.4849 0.8401 -0.0004 24 1 1.0391 -4.1015 0.7424 25 1 2.7253 -3.5266 0.7382 26 1 2.2840 -5.5964 -0.7013 27 1 3.0386 -4.2282 -1.5603 28 1 -2.1635 -6.9422 -2.4732 29 1 -0.8493 -7.7942 -3.3308 30 1 -3.2349 -6.2954 -4.5580 31 1 -2.7205 -7.9884 -4.8542 32 1 0.9195 -5.9456 -4.8248 33 1 -0.0100 -4.4392 -5.0957 34 1 1.3500 -2.7933 -3.1136 35 1 -0.3376 -3.3685 -3.1129 36 1 -0.6559 -2.6637 -0.8086 37 1 0.0987 -1.2956 -1.6676 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070436491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:15 Heat of formation + Delta-G solvation = -8.965352 kcal Electronic energy + Delta-G solvation = -19344.295277 eV Core-core repulsion = 16441.385218 eV Total energy + Delta-G solvation = -2902.910059 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.03680 -37.08162 -35.50675 -33.96469 -31.55951 -30.34409 -29.71389 -27.08757 -25.42147 -23.75217 -23.04945 -21.82103 -20.13352 -18.62695 -17.53563 -16.79491 -16.22739 -15.76034 -15.40964 -14.82070 -14.48431 -13.95365 -13.81905 -13.58613 -13.43824 -13.35721 -12.84056 -12.46858 -12.31722 -12.15393 -11.74310 -11.64032 -11.41512 -11.05070 -10.84739 -10.79947 -10.57224 -10.33955 -10.26811 -10.04718 -9.91555 -9.39901 -8.66579 -8.34503 -7.83678 -6.80863 -5.92509 -3.35117 1.64613 2.13688 2.83308 3.28397 3.31209 3.37670 3.39037 4.37766 4.39867 4.52564 4.59325 4.84626 4.94398 4.98777 5.20695 5.28048 5.37199 5.41734 5.50870 5.67763 5.75344 5.78830 5.86251 5.99506 6.03125 6.11056 6.25399 6.34069 6.70389 6.83555 7.10601 7.36589 7.65573 7.78623 8.28022 8.40069 9.04925 9.67897 10.23993 11.15506 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.030732 B = 0.004753 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.877256 B = 5889.265934 C = 6339.957362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.068 0.932 9 N -0.591 5.591 10 C 0.132 3.868 11 C 0.095 3.905 12 N -0.593 5.593 13 C 0.520 3.480 14 O -0.553 6.553 15 C -0.119 4.119 16 H 0.108 0.892 17 C -0.109 4.109 18 C -0.071 4.071 19 S -0.292 6.292 20 C -0.056 4.056 21 C 0.077 3.923 22 C 0.157 3.843 23 H 0.256 0.744 24 H 0.024 0.976 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.024 0.976 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.976 -9.740 -8.480 13.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.387 4.387 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.005 3.995 11 C -0.029 4.029 12 N -0.324 5.324 13 C 0.306 3.694 14 O -0.432 6.432 15 C -0.141 4.141 16 H 0.126 0.874 17 C -0.148 4.148 18 C -0.219 4.219 19 S -0.066 6.066 20 C -0.205 4.205 21 C -0.048 4.048 22 C 0.030 3.970 23 H 0.066 0.934 24 H 0.041 0.959 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.890 -10.265 -9.376 14.200 hybrid contribution 0.346 1.257 1.218 1.784 sum -2.545 -9.008 -8.158 12.417 Atomic orbital electron populations 1.70014 1.05324 1.25919 1.53401 1.25028 0.95270 0.98547 1.00642 0.86340 0.78958 0.83078 0.78249 1.20922 1.21554 1.20796 1.19181 0.93378 0.84892 1.41217 0.91395 1.43986 1.36619 1.01202 1.49533 1.21288 0.98450 0.87002 0.92793 1.22236 0.87548 1.01203 0.91924 1.48078 1.32786 1.06505 1.45045 1.20127 0.82778 0.83801 0.82711 1.90647 1.66045 1.29895 1.56650 1.22268 0.97046 1.01226 0.93560 0.87424 1.22517 0.97748 0.97494 0.97078 1.24278 0.98732 1.04692 0.94168 1.87528 1.31240 1.69730 1.18132 1.23895 1.00331 1.03429 0.92842 1.22872 0.99060 0.83574 0.99245 1.21283 0.89234 0.99020 0.87473 0.93375 0.95853 0.91463 0.89936 0.91808 0.89289 0.88852 0.88891 0.87736 0.88621 0.87760 0.91545 0.90998 0.95832 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.84 11.19 55.49 0.62 -24.22 16 2 C 0.00 0.10 4.88 -17.43 -0.09 0.02 16 3 Si 0.90 20.69 29.59 -169.99 -5.03 15.66 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.26 -6.70 9.58 -15.06 -0.14 -6.84 16 8 H 0.07 1.74 7.90 -52.48 -0.41 1.32 16 9 N -0.59 -13.99 2.97 -171.76 -0.51 -14.50 16 10 C 0.13 2.68 6.67 -3.60 -0.02 2.66 16 11 C 0.09 1.68 6.60 -3.60 -0.02 1.66 16 12 N -0.59 -10.15 2.94 -172.22 -0.51 -10.66 16 13 C 0.52 8.48 6.74 -10.99 -0.07 8.41 16 14 O -0.55 -10.52 15.18 5.55 0.08 -10.43 16 15 C -0.12 -1.50 2.07 -90.38 -0.19 -1.69 16 16 H 0.11 1.29 6.53 -51.93 -0.34 0.95 16 17 C -0.11 -1.24 5.47 -24.87 -0.14 -1.38 16 18 C -0.07 -0.68 7.36 38.29 0.28 -0.39 16 19 S -0.29 -3.45 23.26 -107.50 -2.50 -5.95 16 20 C -0.06 -0.67 6.48 37.82 0.25 -0.42 16 21 C 0.08 1.29 6.33 -3.36 -0.02 1.27 16 22 C 0.16 3.41 5.55 -3.37 -0.02 3.40 16 23 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 1.31 7.94 -51.93 -0.41 0.90 16 26 H 0.08 1.44 6.99 -51.93 -0.36 1.07 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.09 1.19 7.49 -51.93 -0.39 0.80 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.10 1.20 7.88 -51.93 -0.41 0.79 16 33 H 0.10 1.13 7.81 -51.93 -0.41 0.72 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.00 5.11 -51.93 -0.27 0.74 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 2.47 5.93 -51.93 -0.31 2.16 16 LS Contribution 303.07 15.07 4.57 4.57 Total: -1.00 -29.45 303.07 -8.86 -38.32 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.40 Total: 0.53 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -0.19 Total: 6.69 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.40 Total: -49.37 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -2.50 Total: -5.95 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.45 -8.86 -38.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070436491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.350 kcal (2) G-P(sol) polarization free energy of solvation -29.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds