Wall clock time and date at job start Mon Mar 30 2020 00:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00303 * 2 1 4 4 H 1.48500 * 109.46976 * 239.99851 * 3 2 1 5 5 H 1.48497 * 109.46830 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47195 * 119.99875 * 3 2 1 7 7 C 1.38821 * 119.99618 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99374 * 198.80725 * 7 2 1 9 9 N 1.36931 * 120.00025 * 18.80007 * 7 2 1 10 10 C 1.46965 * 120.59561 * 206.88599 * 9 7 2 11 11 C 1.53371 * 108.63771 * 235.25456 * 10 9 7 12 12 N 1.46960 * 108.63487 * 310.57526 * 11 10 9 13 13 C 1.34776 * 120.59655 * 235.20502 * 12 11 10 14 14 O 1.21284 * 119.99836 * 5.11620 * 13 12 11 15 15 C 1.50697 * 119.99974 * 185.11803 * 13 12 11 16 16 H 1.08997 * 109.60717 * 317.00510 * 15 13 12 17 17 C 1.54392 * 109.41813 * 196.82464 * 15 13 12 18 18 C 1.55138 * 106.63721 * 192.95977 * 17 15 13 19 19 S 1.83456 * 102.38921 * 42.06361 * 18 17 15 20 20 C 1.54273 * 109.61446 * 77.34561 * 15 13 12 21 21 C 1.46974 * 118.81144 * 55.47799 * 12 11 10 22 22 C 1.46968 * 120.59364 * 26.91818 * 9 7 2 23 23 H 0.96997 * 119.99445 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.61000 * 115.50857 * 10 9 7 25 25 H 1.09005 * 109.74709 * 355.08216 * 10 9 7 26 26 H 1.08998 * 109.60832 * 190.83020 * 11 10 9 27 27 H 1.09004 * 109.60829 * 70.32001 * 11 10 9 28 28 H 1.08997 * 110.23133 * 73.61141 * 17 15 13 29 29 H 1.09006 * 109.97505 * 312.16583 * 17 15 13 30 30 H 1.09005 * 110.85262 * 283.79005 * 18 17 15 31 31 H 1.08996 * 110.85916 * 160.35052 * 18 17 15 32 32 H 1.09006 * 110.39974 * 28.90106 * 20 15 13 33 33 H 1.09000 * 110.40136 * 266.48893 * 20 15 13 34 34 H 1.08997 * 109.60840 * 64.26691 * 21 12 11 35 35 H 1.08996 * 109.60610 * 184.77770 * 21 12 11 36 36 H 1.08997 * 109.60770 * 244.49275 * 22 9 7 37 37 H 1.08998 * 109.61216 * 5.00147 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2023 0.0005 8 1 3.0471 -1.2271 0.3021 9 7 1.3803 -2.3566 -0.3811 10 6 1.8276 -3.6583 0.1341 11 6 2.1375 -4.5759 -1.0552 12 7 1.0024 -4.5354 -1.9878 13 6 0.3830 -5.6717 -2.3642 14 8 0.6996 -6.7296 -1.8628 15 6 -0.7030 -5.6276 -3.4081 16 1 -1.3592 -4.7784 -3.2175 17 6 -1.5209 -6.9359 -3.3535 18 6 -2.3854 -6.9733 -4.6411 19 16 -1.2084 -6.3914 -5.9225 20 6 -0.0701 -5.4888 -4.8082 21 6 0.5587 -3.2342 -2.5074 22 6 0.2453 -2.3161 -1.3138 23 1 -0.4849 0.8401 -0.0004 24 1 1.0391 -4.1015 0.7424 25 1 2.7253 -3.5266 0.7382 26 1 2.2840 -5.5964 -0.7013 27 1 3.0386 -4.2282 -1.5603 28 1 -2.1635 -6.9422 -2.4732 29 1 -0.8493 -7.7942 -3.3308 30 1 -3.2349 -6.2954 -4.5580 31 1 -2.7205 -7.9884 -4.8542 32 1 0.9195 -5.9456 -4.8248 33 1 -0.0100 -4.4392 -5.0957 34 1 1.3500 -2.7933 -3.1136 35 1 -0.3376 -3.3685 -3.1129 36 1 -0.6559 -2.6637 -0.8086 37 1 0.0987 -1.2956 -1.6676 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070436491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:15 Heat of formation + Delta-G solvation = -25.934651 kcal Electronic energy + Delta-G solvation = -19345.031121 eV Core-core repulsion = 16441.385218 eV Total energy + Delta-G solvation = -2903.645904 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.37093 -38.62964 -36.58864 -35.64730 -33.28072 -31.93127 -30.75769 -28.73021 -26.56384 -25.35607 -24.55456 -23.09951 -21.56149 -20.03859 -18.97531 -17.95703 -17.65952 -17.11172 -16.65974 -16.57132 -15.68006 -15.50438 -15.24964 -15.09474 -14.93162 -14.72420 -13.99837 -13.72256 -13.44405 -13.26659 -13.20919 -12.93314 -12.65077 -12.64581 -12.52223 -12.25755 -12.04992 -12.03389 -11.77191 -11.69559 -11.20166 -10.70452 -10.57362 -9.87302 -8.73561 -8.68697 -7.90041 -5.35941 0.76669 1.22255 1.49818 1.51693 1.58383 1.60300 1.97733 2.51399 3.24473 3.33227 3.51689 3.56454 3.62395 3.93004 3.96657 4.19031 4.21149 4.27455 4.33854 4.50318 4.51465 4.60200 4.62922 4.69328 4.77232 4.79057 4.88834 5.04902 5.08717 5.21591 5.50385 5.58769 5.64773 6.33923 6.42446 7.06815 7.10177 7.77939 8.30496 9.15268 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.030732 B = 0.004753 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.877256 B = 5889.265934 C = 6339.957362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.043 4.043 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.268 4.268 8 H 0.069 0.931 9 N -0.608 5.608 10 C 0.132 3.868 11 C 0.105 3.895 12 N -0.598 5.598 13 C 0.520 3.480 14 O -0.581 6.581 15 C -0.113 4.113 16 H 0.121 0.879 17 C -0.107 4.107 18 C -0.056 4.056 19 S -0.318 6.318 20 C -0.050 4.050 21 C 0.094 3.906 22 C 0.161 3.839 23 H 0.253 0.747 24 H 0.008 0.992 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.000 1.000 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.122 -10.046 -9.693 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.239 4.239 3 Si 0.795 3.205 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.397 4.397 8 H 0.087 0.913 9 N -0.332 5.332 10 C 0.006 3.994 11 C -0.019 4.019 12 N -0.330 5.330 13 C 0.308 3.692 14 O -0.461 6.461 15 C -0.135 4.135 16 H 0.138 0.862 17 C -0.147 4.147 18 C -0.204 4.204 19 S -0.093 6.093 20 C -0.199 4.199 21 C -0.029 4.029 22 C 0.034 3.966 23 H 0.062 0.938 24 H 0.026 0.974 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.091 0.909 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.140 0.860 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.018 0.982 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.029 -10.596 -10.604 15.293 hybrid contribution 0.378 1.274 1.661 2.127 sum -2.650 -9.322 -8.943 13.187 Atomic orbital electron populations 1.70156 1.06591 1.26207 1.54814 1.25712 0.95942 1.01308 1.00924 0.85362 0.77613 0.79248 0.78320 1.20181 1.22043 1.20529 1.19490 0.93624 0.85979 1.40656 0.91339 1.44253 1.36880 1.01669 1.50355 1.21346 0.98003 0.86178 0.93919 1.22033 0.88253 1.00529 0.91120 1.48140 1.32776 1.06930 1.45105 1.20715 0.82817 0.82890 0.82753 1.90637 1.66934 1.30810 1.57764 1.22312 0.95971 1.02549 0.92699 0.86159 1.22487 0.97683 0.96039 0.98442 1.24341 0.98098 1.06146 0.91803 1.87670 1.32175 1.70047 1.19365 1.23845 0.99822 1.04130 0.92080 1.22638 1.00798 0.82381 0.97117 1.21142 0.88011 0.98770 0.88668 0.93832 0.97385 0.90969 0.89541 0.90906 0.88545 0.90439 0.87094 0.86031 0.89477 0.86476 0.90864 0.87619 0.98152 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.01 11.19 21.65 0.24 -51.77 16 2 C -0.04 -2.27 4.88 84.86 0.41 -1.85 16 3 Si 0.97 42.54 29.59 68.60 2.03 44.57 16 4 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.27 -13.94 9.58 84.04 0.81 -13.13 16 8 H 0.07 3.48 7.90 -2.91 -0.02 3.46 16 9 N -0.61 -28.87 2.97 -697.33 -2.07 -30.94 16 10 C 0.13 5.37 6.67 86.42 0.58 5.94 16 11 C 0.10 3.62 6.60 86.42 0.57 4.19 16 12 N -0.60 -19.62 2.94 -817.15 -2.40 -22.02 16 13 C 0.52 16.15 6.74 87.66 0.59 16.74 16 14 O -0.58 -21.48 15.18 -3.04 -0.05 -21.53 16 15 C -0.11 -2.60 2.07 -10.64 -0.02 -2.62 16 16 H 0.12 2.49 6.53 -2.39 -0.02 2.48 16 17 C -0.11 -2.19 5.47 31.80 0.17 -2.02 16 18 C -0.06 -0.91 7.36 72.71 0.54 -0.37 16 19 S -0.32 -6.80 23.26 -56.49 -1.31 -8.11 16 20 C -0.05 -1.07 6.48 72.41 0.47 -0.60 16 21 C 0.09 3.02 6.33 86.56 0.55 3.57 16 22 C 0.16 7.00 5.55 86.56 0.48 7.48 16 23 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 24 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.07 2.80 7.94 -2.38 -0.02 2.78 16 26 H 0.09 2.93 6.99 -2.39 -0.02 2.92 16 27 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 28 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.08 1.86 7.49 -2.38 -0.02 1.84 16 30 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.09 2.02 7.88 -2.38 -0.02 2.00 16 33 H 0.12 2.19 7.81 -2.39 -0.02 2.17 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.11 2.66 5.11 -2.39 -0.01 2.65 16 36 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 37 H 0.08 3.79 5.93 -2.39 -0.01 3.77 16 Total: -1.00 -63.07 303.07 2.64 -60.43 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 1.06 Total: 12.04 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 5.14 Total: 17.32 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -4.23 Total: -104.73 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.05 Total: -21.53 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: -6.80 SS G_CDS: -1.31 Total: -8.11 kcal Total: -63.07 2.64 -60.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070436491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.498 kcal (2) G-P(sol) polarization free energy of solvation -63.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds