Wall clock time and date at job start Mon Mar 30 2020 01:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 N 1.31130 * 126.54970 * 89.71287 * 4 3 2 6 6 C 1.34495 * 105.61689 * 179.91883 * 5 4 3 7 7 C 1.50697 * 126.28834 * 180.12736 * 6 5 4 8 8 S 1.81395 * 109.47229 * 270.23362 * 7 6 5 9 9 C 1.81404 * 103.00013 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.46956 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.46956 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47080 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00142 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99938 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00048 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99755 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47582 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47159 * 120.00470 * 16 14 12 19 19 H 1.48507 * 109.47207 * 239.99836 * 16 14 12 20 20 N 1.29951 * 107.42004 * 0.34813 * 6 5 4 21 21 O 1.21293 * 110.25189 * 359.77930 * 20 6 5 22 22 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 25 25 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 26 26 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 27 27 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 28 28 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 29 29 H 1.08994 * 109.47153 * 30.23908 * 7 6 5 30 30 H 1.09003 * 109.46924 * 150.23844 * 7 6 5 31 31 H 1.08996 * 109.47054 * 300.00095 * 9 8 7 32 32 H 1.09001 * 109.46648 * 60.00433 * 9 8 7 33 33 H 1.09001 * 109.46819 * 300.00476 * 10 9 8 34 34 H 1.08996 * 109.46888 * 60.00267 * 10 9 8 35 35 H 1.09005 * 109.46567 * 299.99879 * 11 10 9 36 36 H 1.08993 * 109.47449 * 59.99682 * 11 10 9 37 37 H 0.96999 * 119.99948 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3284 1.4369 -1.0524 6 6 5.5843 1.4412 -0.5714 7 6 6.8517 1.4403 -1.3868 8 16 7.3597 -0.2702 -1.7131 9 6 8.8760 -0.0667 -2.6877 10 6 9.4382 -1.4429 -3.0497 11 6 10.7174 -1.2713 -3.8711 12 6 11.2708 -2.6268 -4.2282 13 1 10.7613 -3.5212 -3.9014 14 6 12.4276 -2.7250 -4.9719 15 7 13.0483 -1.6359 -5.3694 16 14 13.1138 -4.4053 -5.4139 17 1 12.2360 -5.4624 -4.8507 18 1 13.1698 -4.5442 -6.8913 19 1 14.4812 -4.5451 -4.8515 20 7 5.5042 1.4413 0.7256 21 8 4.3425 1.4420 1.0745 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 6.6759 1.9538 -2.3320 30 1 7.6390 1.9541 -0.8351 31 1 8.6500 0.4846 -3.6004 32 1 9.6124 0.4847 -2.1031 33 1 9.6640 -1.9946 -2.1371 34 1 8.7016 -1.9939 -3.6344 35 1 10.4918 -0.7195 -4.7837 36 1 11.4538 -0.7204 -3.2861 37 1 13.8624 -1.7050 -5.8923 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161625991.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:39 Heat of formation + Delta-G solvation = 34.389255 kcal Electronic energy + Delta-G solvation = -17109.313436 eV Core-core repulsion = 14208.283374 eV Total energy + Delta-G solvation = -2901.030063 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.82849 -36.54269 -35.85806 -34.48577 -32.75786 -32.04640 -29.64195 -28.09812 -27.48338 -24.02726 -23.44402 -22.62642 -21.43156 -20.25420 -18.36036 -17.74034 -16.50877 -15.92069 -15.80026 -15.49763 -14.72724 -14.59888 -14.46780 -13.96718 -13.65869 -13.49404 -13.10807 -12.51888 -12.41993 -12.28466 -12.02861 -11.87540 -11.75790 -11.48585 -11.27664 -11.20440 -10.93624 -10.90469 -10.55092 -10.20663 -9.82117 -9.75253 -9.33839 -9.11181 -8.38285 -7.53865 -6.03072 -4.05503 0.82531 1.38912 2.38867 2.54664 2.71741 3.30571 3.31997 3.38033 3.42916 3.74876 4.40017 4.44663 4.46018 4.47173 4.84057 4.96155 5.05112 5.11390 5.23643 5.24880 5.33007 5.45763 5.47416 5.57611 5.60385 5.62588 5.77307 5.79111 6.07287 6.51780 6.67989 6.98678 7.61741 7.73284 7.95152 7.95823 8.37470 9.01049 9.58838 11.08304 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.037375 B = 0.002590 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.979778 B =10806.557725 C =11273.371667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.025 4.025 4 C 0.177 3.823 5 N -0.468 5.468 6 C 0.191 3.809 7 C -0.008 4.008 8 S -0.246 6.246 9 C -0.073 4.073 10 C -0.095 4.095 11 C 0.028 3.972 12 C -0.520 4.520 13 H 0.057 0.943 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 N -0.370 5.370 21 O 0.082 5.918 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.762 8.670 11.484 27.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.064 4.064 4 C -0.044 4.044 5 N -0.201 5.201 6 C -0.082 4.082 7 C -0.157 4.157 8 S -0.020 6.020 9 C -0.221 4.221 10 C -0.134 4.134 11 C -0.011 4.011 12 C -0.558 4.558 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 N -0.076 5.076 21 O 0.021 5.979 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.120 0.880 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.125 0.875 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.301 7.829 11.797 27.265 hybrid contribution 1.025 0.315 -0.661 1.260 sum -22.275 8.144 11.136 26.202 Atomic orbital electron populations 1.21742 0.94242 1.02555 1.02252 1.21564 0.96836 0.94159 1.03727 1.20325 0.79918 1.00211 1.05974 1.28867 0.98679 0.96173 0.80688 1.71887 0.99909 1.19578 1.28762 1.24825 0.94228 1.01140 0.87960 1.21419 0.92449 1.00254 1.01546 1.87155 1.35273 1.07278 1.72252 1.23726 0.93662 1.04532 1.00216 1.21481 0.99597 0.91482 1.00842 1.19109 0.90087 0.97496 0.94439 1.21252 1.08724 0.92584 1.33275 0.92472 1.25028 0.96864 0.96688 0.95918 1.69971 1.18523 1.27453 1.37544 0.86508 0.78897 0.84319 0.78132 1.19677 1.20973 1.20978 1.74677 0.97228 1.20312 1.15402 1.85300 1.11385 1.65468 1.35784 0.91955 0.92266 0.92195 0.90697 0.91051 0.87961 0.87155 0.86985 0.87457 0.90083 0.90160 0.92292 0.92242 0.96324 0.96341 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.91 37.15 0.37 -0.20 16 2 C -0.12 -0.68 5.92 -26.74 -0.16 -0.83 16 3 C -0.03 -0.14 5.84 -27.88 -0.16 -0.30 16 4 C 0.18 1.78 7.77 -13.06 -0.10 1.68 16 5 N -0.47 -6.10 11.55 -9.87 -0.11 -6.22 16 6 C 0.19 2.69 7.48 -156.37 -1.17 1.52 16 7 C -0.01 -0.10 6.57 36.00 0.24 0.13 16 8 S -0.25 -4.03 21.72 -107.50 -2.33 -6.36 16 9 C -0.07 -1.26 5.94 37.16 0.22 -1.04 16 10 C -0.09 -1.98 5.16 -26.73 -0.14 -2.12 16 11 C 0.03 0.71 4.97 -27.89 -0.14 0.57 16 12 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 16 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 N -0.37 -5.23 12.16 30.90 0.38 -4.85 16 21 O 0.08 0.96 11.31 18.11 0.20 1.16 16 22 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 23 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 24 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.11 1.30 8.14 -51.92 -0.42 0.88 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 333.18 15.07 5.02 5.02 Total: -1.00 -32.35 333.18 -8.47 -40.82 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: -5.88 Total: -6.01 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -1.45 Total: -14.18 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 1.00 Total: -37.22 kcal Atomic # 8 Polarization: 0.96 SS G_CDS: 0.20 Total: 1.16 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -4.03 SS G_CDS: -2.33 Total: -6.36 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.35 -8.47 -40.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161625991.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.210 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds