Wall clock time and date at job start Mon Mar 30 2020 01:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 N 1.31130 * 126.54970 * 89.71287 * 4 3 2 6 6 C 1.34495 * 105.61689 * 179.91883 * 5 4 3 7 7 C 1.50697 * 126.28834 * 180.12736 * 6 5 4 8 8 S 1.81395 * 109.47229 * 270.23362 * 7 6 5 9 9 C 1.81404 * 103.00013 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.46956 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.46956 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47080 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00142 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99938 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00048 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99755 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47582 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47159 * 120.00470 * 16 14 12 19 19 H 1.48507 * 109.47207 * 239.99836 * 16 14 12 20 20 N 1.29951 * 107.42004 * 0.34813 * 6 5 4 21 21 O 1.21293 * 110.25189 * 359.77930 * 20 6 5 22 22 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 25 25 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 26 26 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 27 27 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 28 28 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 29 29 H 1.08994 * 109.47153 * 30.23908 * 7 6 5 30 30 H 1.09003 * 109.46924 * 150.23844 * 7 6 5 31 31 H 1.08996 * 109.47054 * 300.00095 * 9 8 7 32 32 H 1.09001 * 109.46648 * 60.00433 * 9 8 7 33 33 H 1.09001 * 109.46819 * 300.00476 * 10 9 8 34 34 H 1.08996 * 109.46888 * 60.00267 * 10 9 8 35 35 H 1.09005 * 109.46567 * 299.99879 * 11 10 9 36 36 H 1.08993 * 109.47449 * 59.99682 * 11 10 9 37 37 H 0.96999 * 119.99948 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3284 1.4369 -1.0524 6 6 5.5843 1.4412 -0.5714 7 6 6.8517 1.4403 -1.3868 8 16 7.3597 -0.2702 -1.7131 9 6 8.8760 -0.0667 -2.6877 10 6 9.4382 -1.4429 -3.0497 11 6 10.7174 -1.2713 -3.8711 12 6 11.2708 -2.6268 -4.2282 13 1 10.7613 -3.5212 -3.9014 14 6 12.4276 -2.7250 -4.9719 15 7 13.0483 -1.6359 -5.3694 16 14 13.1138 -4.4053 -5.4139 17 1 12.2360 -5.4624 -4.8507 18 1 13.1698 -4.5442 -6.8913 19 1 14.4812 -4.5451 -4.8515 20 7 5.5042 1.4413 0.7256 21 8 4.3425 1.4420 1.0745 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 6.6759 1.9538 -2.3320 30 1 7.6390 1.9541 -0.8351 31 1 8.6500 0.4846 -3.6004 32 1 9.6124 0.4847 -2.1031 33 1 9.6640 -1.9946 -2.1371 34 1 8.7016 -1.9939 -3.6344 35 1 10.4918 -0.7195 -4.7837 36 1 11.4538 -0.7204 -3.2861 37 1 13.8624 -1.7050 -5.8923 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161625991.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:39 Heat of formation + Delta-G solvation = 14.885252 kcal Electronic energy + Delta-G solvation = -17110.159193 eV Core-core repulsion = 14208.283374 eV Total energy + Delta-G solvation = -2901.875820 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.78686 -37.38767 -36.51456 -36.38732 -34.07506 -33.55210 -30.66049 -29.40767 -28.64205 -25.49116 -24.83347 -23.34733 -22.30392 -21.86060 -19.32288 -18.75329 -18.50513 -17.23370 -16.59019 -16.54827 -16.24636 -16.06929 -15.50464 -14.99389 -14.63900 -14.46914 -14.32819 -13.87031 -13.68941 -13.49798 -12.95716 -12.89052 -12.83677 -12.77658 -12.61479 -12.37938 -12.20164 -12.17579 -11.68980 -11.61641 -11.53026 -11.27114 -11.04963 -10.85209 -10.58026 -8.83765 -8.22727 -6.33454 -0.17835 0.36550 1.25388 1.39423 1.39860 1.51344 1.53362 1.78656 2.39909 2.41071 2.83658 3.10809 3.68048 3.96973 3.98556 4.00112 4.03823 4.07456 4.17617 4.39272 4.54675 4.64851 4.65305 4.76199 4.78315 4.90268 4.92582 4.92971 5.10391 5.24485 5.27940 5.47255 5.47335 5.66232 5.80604 6.20766 6.82097 7.03501 7.35677 8.89153 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.037375 B = 0.002590 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.979778 B =10806.557725 C =11273.371667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C -0.023 4.023 4 C 0.192 3.808 5 N -0.495 5.495 6 C 0.176 3.824 7 C 0.003 3.997 8 S -0.269 6.269 9 C -0.064 4.064 10 C -0.081 4.081 11 C 0.031 3.969 12 C -0.544 4.544 13 H 0.058 0.942 14 C 0.001 3.999 15 N -0.931 5.931 16 Si 0.965 3.035 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.277 1.277 20 N -0.390 5.390 21 O 0.084 5.916 22 H 0.059 0.941 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.135 0.865 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.120 0.880 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.000 1.000 36 H -0.001 1.001 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.365 8.681 12.073 29.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.062 4.062 4 C -0.028 4.028 5 N -0.228 5.228 6 C -0.097 4.097 7 C -0.145 4.145 8 S -0.043 6.043 9 C -0.212 4.212 10 C -0.120 4.120 11 C -0.008 4.008 12 C -0.583 4.583 13 H 0.076 0.924 14 C -0.197 4.197 15 N -0.571 5.571 16 Si 0.790 3.210 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.202 1.202 20 N -0.098 5.098 21 O 0.023 5.977 22 H 0.078 0.922 23 H 0.092 0.908 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.153 0.847 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.139 0.861 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.018 0.982 36 H 0.017 0.983 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.914 7.836 12.383 28.904 hybrid contribution 1.398 0.363 -0.788 1.645 sum -23.516 8.199 11.595 27.472 Atomic orbital electron populations 1.21720 0.92659 1.02751 1.03270 1.21536 0.98092 0.93881 1.02571 1.20691 0.76610 1.00597 1.08299 1.29776 1.00005 0.93466 0.79510 1.71893 0.99915 1.21087 1.29938 1.24929 0.94749 1.01864 0.88131 1.21438 0.92843 0.97702 1.02562 1.87163 1.34516 1.10624 1.72020 1.23448 0.94463 1.02209 1.01071 1.21176 0.97436 0.93734 0.99693 1.18978 0.91813 0.95955 0.94014 1.21681 1.09290 0.93716 1.33578 0.92415 1.25956 0.97207 1.00846 0.95720 1.70085 1.19054 1.29793 1.38166 0.85397 0.78230 0.79365 0.78054 1.18842 1.20194 1.20250 1.74658 0.98484 1.21024 1.15615 1.85267 1.10971 1.65365 1.36126 0.92229 0.90785 0.91635 0.92726 0.91439 0.84713 0.85692 0.85517 0.86140 0.89212 0.89385 0.92703 0.92570 0.98186 0.98260 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 71.98 0.71 -0.07 16 2 C -0.12 -1.12 5.92 30.59 0.18 -0.94 16 3 C -0.02 -0.19 5.84 29.85 0.17 -0.02 16 4 C 0.19 3.58 7.77 88.38 0.69 4.27 16 5 N -0.49 -12.39 11.55 -303.20 -3.50 -15.89 16 6 C 0.18 4.79 7.48 138.46 1.04 5.82 16 7 C 0.00 0.09 6.57 71.24 0.47 0.55 16 8 S -0.27 -8.67 21.72 -56.49 -1.23 -9.89 16 9 C -0.06 -2.18 5.94 71.98 0.43 -1.75 16 10 C -0.08 -3.44 5.16 30.59 0.16 -3.28 16 11 C 0.03 1.65 4.97 29.85 0.15 1.80 16 12 C -0.54 -31.36 9.11 25.60 0.23 -31.13 16 13 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 14 C 0.00 0.04 5.46 84.65 0.46 0.50 16 15 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 16 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 17 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 N -0.39 -10.72 12.16 -60.33 -0.73 -11.45 16 21 O 0.08 1.88 11.31 74.87 0.85 2.72 16 22 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 23 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 24 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.05 2.33 8.14 -2.39 -0.02 2.32 16 34 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 36 H 0.00 -0.06 8.14 -2.39 -0.02 -0.07 16 37 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -69.78 333.18 3.42 -66.36 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: 1.04 Total: 1.94 kcal Atomic # 6 Polarization: -28.94 SS G_CDS: 4.69 Total: -24.25 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -3.95 Total: -83.57 kcal Atomic # 8 Polarization: 1.88 SS G_CDS: 0.85 Total: 2.72 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.23 Total: -9.89 kcal Total: -69.78 3.42 -66.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161625991.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.243 kcal (2) G-P(sol) polarization free energy of solvation -69.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds