Wall clock time and date at job start Mon Mar 30 2020 01:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 N 1.29943 * 126.28688 * 90.01599 * 5 4 2 7 7 O 1.21305 * 110.25141 * 179.97438 * 6 5 4 8 8 C 1.33646 * 109.80849 * 0.02562 * 7 6 5 9 9 C 1.50697 * 126.54759 * 180.02562 * 8 7 6 10 10 S 1.81407 * 109.46974 * 269.97414 * 9 8 7 11 11 C 1.81400 * 102.99898 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.46853 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47114 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99472 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99896 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99508 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00475 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47105 * 89.99628 * 17 15 13 19 19 H 1.48494 * 109.47275 * 210.00420 * 17 15 13 20 20 H 1.48503 * 109.46907 * 330.00090 * 17 15 13 21 21 N 1.31130 * 106.89842 * 359.76565 * 8 7 6 22 22 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 24 24 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 25 25 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 26 26 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 27 27 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 29 29 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 30 30 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 31 31 H 1.09003 * 109.47414 * 29.97519 * 9 8 7 32 32 H 1.09000 * 109.47233 * 149.97851 * 9 8 7 33 33 H 1.08996 * 109.47409 * 300.00047 * 11 10 9 34 34 H 1.09002 * 109.47311 * 59.99932 * 11 10 9 35 35 H 1.08996 * 109.47454 * 300.00389 * 12 11 10 36 36 H 1.09001 * 109.46797 * 60.00601 * 12 11 10 37 37 H 0.97010 * 119.99632 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 -2.1733 -1.1891 6 7 0.5430 -2.6891 -1.6540 7 8 0.5210 -3.8846 -1.4493 8 6 1.6370 -4.2559 -0.8147 9 6 1.9993 -5.6524 -0.3790 10 16 1.3795 -5.9414 1.3012 11 6 1.9049 -7.6438 1.6427 12 6 1.4509 -8.0455 3.0475 13 6 1.8868 -9.4600 3.3310 14 1 2.4334 -10.0165 2.5840 15 6 1.5878 -10.0435 4.5438 16 7 1.9687 -11.2777 4.7913 17 14 0.6419 -9.0811 5.8355 18 1 -0.8146 -9.3038 5.6506 19 1 1.0451 -9.5403 7.1888 20 1 0.9432 -7.6339 5.6937 21 7 2.3591 -3.1740 -0.6486 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 1.6768 1.9562 0.8901 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6053 -0.2617 -2.1370 30 1 3.1263 -0.6443 -1.2952 31 1 1.5498 -6.3740 -1.0612 32 1 3.0832 -5.7671 -0.3912 33 1 1.4582 -8.3158 0.9100 34 1 2.9912 -7.7083 1.5799 35 1 1.8980 -7.3734 3.7799 36 1 0.3646 -7.9809 3.1105 37 1 1.7587 -11.6881 5.6449 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190906271.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:52 Heat of formation + Delta-G solvation = 41.410589 kcal Electronic energy + Delta-G solvation = -17582.473881 eV Core-core repulsion = 14681.748286 eV Total energy + Delta-G solvation = -2900.725595 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.70902 -37.43074 -35.51088 -33.79857 -33.47407 -31.31868 -29.29972 -28.32064 -27.45080 -25.64293 -23.82425 -22.06963 -20.85930 -20.41513 -18.29889 -17.56781 -17.04897 -16.03659 -15.64643 -14.99598 -14.71604 -14.50414 -14.41494 -14.31418 -13.56896 -13.23561 -12.86954 -12.76890 -12.68874 -12.46589 -12.19210 -11.99491 -11.82710 -11.32344 -11.23806 -11.21592 -11.15267 -11.01759 -10.39489 -10.36970 -10.13511 -9.74794 -9.65274 -9.28599 -8.64216 -7.48999 -6.15077 -4.15852 0.73629 1.71391 2.30047 2.59230 2.86240 3.27287 3.35032 3.39611 3.41551 3.83572 4.37456 4.47631 4.52700 4.64100 4.80760 4.88530 5.14929 5.18906 5.20909 5.27372 5.34273 5.39142 5.53752 5.58494 5.64288 5.75597 5.79713 5.85727 5.86225 5.96700 6.01777 6.41535 7.02489 7.14647 7.59622 8.02799 8.37024 8.85998 9.45209 10.97430 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.029519 B = 0.003268 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.314814 B = 8566.727290 C = 9111.940552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.024 4.024 5 C 0.174 3.826 6 N -0.382 5.382 7 O 0.082 5.918 8 C 0.207 3.793 9 C -0.010 4.010 10 S -0.251 6.251 11 C -0.052 4.052 12 C 0.002 3.998 13 C -0.522 4.522 14 H 0.075 0.925 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.878 3.122 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.263 1.263 21 N -0.468 5.468 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.028 0.972 36 H 0.023 0.977 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.174 20.870 -12.749 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.063 4.063 5 C -0.099 4.099 6 N -0.089 5.089 7 O 0.024 5.976 8 C -0.014 4.014 9 C -0.159 4.159 10 S -0.025 6.025 11 C -0.200 4.200 12 C -0.037 4.037 13 C -0.562 4.562 14 H 0.093 0.907 15 C -0.130 4.130 16 N -0.536 5.536 17 Si 0.705 3.295 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.188 1.188 21 N -0.203 5.203 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.046 0.954 36 H 0.041 0.959 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.994 22.151 -12.281 25.347 hybrid contribution 0.157 -0.744 0.005 0.761 sum -0.837 21.407 -12.276 24.691 Atomic orbital electron populations 1.21881 0.94684 1.02184 1.01924 1.21104 0.96440 0.96381 0.97371 1.21804 1.01197 0.94971 1.02186 1.20108 1.02572 0.83547 1.00057 1.25805 0.87988 0.99364 0.96770 1.74637 1.21570 0.90675 1.22048 1.85316 1.38266 1.18268 1.55785 1.27707 0.83045 0.97669 0.92971 1.21651 1.06169 0.87805 1.00285 1.87308 1.76735 1.24512 1.13965 1.23626 1.03462 0.88782 1.04102 1.19381 0.97022 0.97783 0.89494 1.20913 1.37412 0.95844 1.01998 0.90673 1.24952 0.95251 0.94731 0.98099 1.69894 1.46445 1.13039 1.24204 0.86796 0.80593 0.81113 0.81029 1.20039 1.21144 1.18792 1.71922 1.29731 0.97543 1.21130 0.92743 0.92346 0.92422 0.90375 0.92138 0.92273 0.92446 0.89133 0.88559 0.86375 0.85652 0.90083 0.90071 0.95406 0.95858 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.00 37.16 0.33 -1.06 16 2 C -0.09 -0.82 2.91 -90.62 -0.26 -1.08 16 3 C -0.14 -0.94 9.19 37.16 0.34 -0.60 16 4 C -0.02 -0.22 5.32 -27.89 -0.15 -0.37 16 5 C 0.17 2.21 6.68 -156.37 -1.05 1.16 16 6 N -0.38 -5.23 11.47 30.90 0.35 -4.88 16 7 O 0.08 1.14 11.31 18.09 0.20 1.34 16 8 C 0.21 2.76 7.77 -13.06 -0.10 2.66 16 9 C -0.01 -0.12 6.57 36.00 0.24 0.12 16 10 S -0.25 -4.09 21.72 -107.50 -2.33 -6.43 16 11 C -0.05 -0.95 5.88 37.16 0.22 -0.73 16 12 C 0.00 0.06 4.05 -27.88 -0.11 -0.06 16 13 C -0.52 -14.22 9.66 -34.44 -0.33 -14.55 16 14 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 17 Si 0.88 21.26 27.47 -169.99 -4.67 16.60 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 21 N -0.47 -6.56 11.55 -9.87 -0.11 -6.67 16 22 H 0.05 0.64 6.84 -51.93 -0.36 0.28 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 31 H 0.12 1.12 8.14 -51.92 -0.42 0.70 16 32 H 0.13 1.32 8.14 -51.92 -0.42 0.90 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.08 1.41 8.14 -51.92 -0.42 0.99 16 35 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 36 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 326.34 15.07 4.92 4.92 Total: -1.00 -30.56 326.34 -7.62 -38.18 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -5.78 Total: -4.39 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -0.97 Total: -12.56 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 1.01 Total: -37.65 kcal Atomic # 8 Polarization: 1.14 SS G_CDS: 0.20 Total: 1.34 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.60 kcal Atomic # 16 Polarization: -4.09 SS G_CDS: -2.33 Total: -6.43 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.56 -7.62 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190906271.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.587 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds