Wall clock time and date at job start Mon Mar 30 2020 01:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 N 1.29943 * 126.28688 * 90.01599 * 5 4 2 7 7 O 1.21305 * 110.25141 * 179.97438 * 6 5 4 8 8 C 1.33646 * 109.80849 * 0.02562 * 7 6 5 9 9 C 1.50697 * 126.54759 * 180.02562 * 8 7 6 10 10 S 1.81407 * 109.46974 * 269.97414 * 9 8 7 11 11 C 1.81400 * 102.99898 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.46853 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47114 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99472 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99896 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99508 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00475 * 0.02562 * 15 13 12 18 18 H 1.48493 * 109.47105 * 89.99628 * 17 15 13 19 19 H 1.48494 * 109.47275 * 210.00420 * 17 15 13 20 20 H 1.48503 * 109.46907 * 330.00090 * 17 15 13 21 21 N 1.31130 * 106.89842 * 359.76565 * 8 7 6 22 22 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 24 24 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 25 25 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 26 26 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 27 27 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 29 29 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 30 30 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 31 31 H 1.09003 * 109.47414 * 29.97519 * 9 8 7 32 32 H 1.09000 * 109.47233 * 149.97851 * 9 8 7 33 33 H 1.08996 * 109.47409 * 300.00047 * 11 10 9 34 34 H 1.09002 * 109.47311 * 59.99932 * 11 10 9 35 35 H 1.08996 * 109.47454 * 300.00389 * 12 11 10 36 36 H 1.09001 * 109.46797 * 60.00601 * 12 11 10 37 37 H 0.97010 * 119.99632 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 -2.1733 -1.1891 6 7 0.5430 -2.6891 -1.6540 7 8 0.5210 -3.8846 -1.4493 8 6 1.6370 -4.2559 -0.8147 9 6 1.9993 -5.6524 -0.3790 10 16 1.3795 -5.9414 1.3012 11 6 1.9049 -7.6438 1.6427 12 6 1.4509 -8.0455 3.0475 13 6 1.8868 -9.4600 3.3310 14 1 2.4334 -10.0165 2.5840 15 6 1.5878 -10.0435 4.5438 16 7 1.9687 -11.2777 4.7913 17 14 0.6419 -9.0811 5.8355 18 1 -0.8146 -9.3038 5.6506 19 1 1.0451 -9.5403 7.1888 20 1 0.9432 -7.6339 5.6937 21 7 2.3591 -3.1740 -0.6486 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 1.6768 1.9562 0.8901 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6053 -0.2617 -2.1370 30 1 3.1263 -0.6443 -1.2952 31 1 1.5498 -6.3740 -1.0612 32 1 3.0832 -5.7671 -0.3912 33 1 1.4582 -8.3158 0.9100 34 1 2.9912 -7.7083 1.5799 35 1 1.8980 -7.3734 3.7799 36 1 0.3646 -7.9809 3.1105 37 1 1.7587 -11.6881 5.6449 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190906271.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:52 Heat of formation + Delta-G solvation = 22.677745 kcal Electronic energy + Delta-G solvation = -17583.286198 eV Core-core repulsion = 14681.748286 eV Total energy + Delta-G solvation = -2901.537912 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.72373 -38.22557 -36.44353 -35.74244 -34.43407 -33.27127 -30.27789 -29.12347 -28.08184 -27.52711 -24.82496 -23.21797 -22.47269 -21.17579 -19.32597 -19.12861 -18.56619 -17.23258 -16.55562 -16.40116 -16.00850 -15.68766 -15.44849 -15.18794 -14.82310 -14.73061 -14.52880 -13.69128 -13.61090 -13.51621 -13.16621 -13.03818 -12.97747 -12.81829 -12.21381 -12.18711 -12.12983 -12.00674 -11.88603 -11.77905 -11.70222 -11.56031 -11.04134 -10.79337 -10.77971 -8.77068 -8.31601 -6.36482 -0.36099 0.64026 1.23740 1.36415 1.38557 1.49626 1.50256 1.66704 2.34611 2.50341 2.92878 3.04128 3.67951 3.82612 3.88973 3.97967 4.08707 4.26495 4.27263 4.32493 4.44490 4.60076 4.66323 4.73612 4.78560 4.81817 4.84551 4.92717 5.01980 5.18478 5.21890 5.31326 5.32691 5.39062 5.55430 6.20955 6.70130 7.01684 7.28199 8.84132 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.029519 B = 0.003268 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.314814 B = 8566.727290 C = 9111.940552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.139 4.139 4 C -0.025 4.025 5 C 0.174 3.826 6 N -0.395 5.395 7 O 0.074 5.926 8 C 0.205 3.795 9 C 0.004 3.996 10 S -0.275 6.275 11 C -0.044 4.044 12 C 0.004 3.996 13 C -0.527 4.527 14 H 0.046 0.954 15 C 0.013 3.987 16 N -0.944 5.944 17 Si 0.942 3.058 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.252 1.252 21 N -0.485 5.485 22 H 0.026 0.974 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.310 23.139 -13.482 26.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.196 4.196 4 C -0.064 4.064 5 C -0.099 4.099 6 N -0.105 5.105 7 O 0.017 5.983 8 C -0.016 4.016 9 C -0.144 4.144 10 S -0.050 6.050 11 C -0.192 4.192 12 C -0.034 4.034 13 C -0.566 4.566 14 H 0.064 0.936 15 C -0.185 4.185 16 N -0.584 5.584 17 Si 0.766 3.234 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.176 1.176 21 N -0.221 5.221 22 H 0.045 0.955 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.166 0.834 32 H 0.163 0.837 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.136 24.415 -13.021 27.693 hybrid contribution 0.236 -1.406 0.123 1.431 sum -0.899 23.009 -12.898 26.393 Atomic orbital electron populations 1.21869 0.95242 1.00588 1.02781 1.21073 0.95901 0.97677 0.96319 1.21768 1.01677 0.93206 1.02962 1.20339 1.03569 0.81599 1.00872 1.26423 0.87361 1.00505 0.95611 1.74637 1.22185 0.90716 1.22940 1.85296 1.38457 1.18455 1.56072 1.27900 0.82892 0.97997 0.92842 1.21755 1.07382 0.87832 0.97471 1.87303 1.77211 1.22544 1.17917 1.23293 1.03805 0.90533 1.01594 1.19227 0.96800 0.95022 0.92393 1.21257 1.36313 0.97848 1.01223 0.93585 1.25851 0.96445 0.95626 1.00594 1.70030 1.48402 1.14915 1.25092 0.85776 0.79385 0.80106 0.78174 1.19149 1.20768 1.17591 1.71940 1.30436 0.98113 1.21580 0.95454 0.91761 0.91335 0.92304 0.91852 0.91492 0.91201 0.87526 0.87198 0.83415 0.83739 0.89174 0.89488 0.95881 0.95868 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.00 71.98 0.65 -1.94 16 2 C -0.09 -1.44 2.91 -10.79 -0.03 -1.47 16 3 C -0.14 -1.47 9.19 71.98 0.66 -0.81 16 4 C -0.03 -0.41 5.32 29.85 0.16 -0.25 16 5 C 0.17 4.18 6.68 138.46 0.93 5.11 16 6 N -0.40 -10.43 11.47 -60.31 -0.69 -11.12 16 7 O 0.07 1.95 11.31 74.80 0.85 2.79 16 8 C 0.20 5.11 7.77 88.38 0.69 5.80 16 9 C 0.00 0.09 6.57 71.24 0.47 0.56 16 10 S -0.28 -8.51 21.72 -56.49 -1.23 -9.74 16 11 C -0.04 -1.56 5.88 71.98 0.42 -1.14 16 12 C 0.00 0.20 4.05 29.85 0.12 0.32 16 13 C -0.53 -28.99 9.66 25.60 0.25 -28.74 16 14 H 0.05 2.72 7.99 -2.91 -0.02 2.70 16 15 C 0.01 0.73 5.47 84.65 0.46 1.20 16 16 N -0.94 -57.61 13.96 21.45 0.30 -57.31 16 17 Si 0.94 43.72 27.47 68.60 1.88 45.60 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 21 N -0.49 -12.87 11.55 -303.19 -3.50 -16.37 16 22 H 0.03 0.62 6.84 -2.39 -0.02 0.60 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.15 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.02 1.06 7.20 -2.39 -0.02 1.04 16 36 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 37 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -66.24 326.34 3.37 -62.88 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: 0.99 Total: 4.62 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 4.77 Total: -21.36 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -3.89 Total: -84.80 kcal Atomic # 8 Polarization: 1.95 SS G_CDS: 0.85 Total: 2.79 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.60 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.23 Total: -9.74 kcal Total: -66.24 3.37 -62.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190906271.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.557 kcal (2) G-P(sol) polarization free energy of solvation -66.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds