Wall clock time and date at job start Mon Mar 30 2020 00:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.50698 * 112.84973 * 110.00217 * 3 2 1 5 5 O 1.21286 * 120.00524 * 230.33386 * 4 3 2 6 6 N 1.34780 * 119.99958 * 50.33390 * 4 3 2 7 7 C 1.39934 * 120.00058 * 185.09553 * 6 4 3 8 8 C 1.39295 * 119.94890 * 213.03901 * 7 6 4 9 9 C 1.38482 * 120.43002 * 179.74303 * 8 7 6 10 10 C 1.37685 * 120.32102 * 0.23084 * 9 8 7 11 11 C 1.40734 * 119.88805 * 0.02828 * 10 9 8 12 12 C 1.41406 * 120.21067 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99944 * 209.18266 * 12 11 10 14 14 C 1.39928 * 120.00485 * 29.17731 * 12 11 10 15 15 N 1.30838 * 119.99630 * 15.64276 * 14 12 11 16 16 Si 1.86798 * 120.00338 * 195.64387 * 14 12 11 17 17 H 1.48496 * 109.47168 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47131 * 119.99995 * 16 14 12 19 19 H 1.48504 * 109.46917 * 239.99719 * 16 14 12 20 20 C 1.38247 * 119.94991 * 33.29338 * 7 6 4 21 21 C 1.53784 * 113.61331 * 241.19691 * 3 2 1 22 22 C 1.53953 * 87.01743 * 89.23032 * 21 3 2 23 23 C 1.53784 * 113.61479 * 338.80768 * 3 2 1 24 24 H 0.97001 * 120.00374 * 5.08957 * 6 4 3 25 25 H 1.07996 * 119.78148 * 0.02562 * 8 7 6 26 26 H 1.08004 * 119.84101 * 180.25858 * 9 8 7 27 27 H 1.08007 * 120.05366 * 179.97438 * 10 9 8 28 28 H 0.96996 * 119.99881 * 179.97438 * 15 14 12 29 29 H 1.08004 * 120.15910 * 0.02562 * 20 7 6 30 30 H 1.09000 * 113.61138 * 203.74612 * 21 3 2 31 31 H 1.08994 * 113.61324 * 334.65265 * 21 3 2 32 32 H 1.08998 * 113.54103 * 270.81078 * 22 21 3 33 33 H 1.08999 * 113.74439 * 139.94083 * 22 21 3 34 34 H 1.09000 * 113.61457 * 25.34657 * 23 3 2 35 35 H 1.08997 * 113.61154 * 156.17066 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1929 0.4759 -1.3050 5 8 4.0466 -0.1813 -1.8621 6 7 2.7675 1.6314 -1.8530 7 6 3.2313 2.0198 -3.1148 8 6 3.4011 3.3710 -3.4077 9 6 3.8645 3.7663 -4.6514 10 6 4.1583 2.8271 -5.6144 11 6 3.9866 1.4586 -5.3348 12 6 4.2857 0.4882 -6.3189 13 1 3.7549 -0.4523 -6.3288 14 6 5.2693 0.7466 -7.2801 15 7 6.1171 1.7270 -7.1013 16 14 5.3719 -0.3081 -8.8184 17 1 4.3068 -1.3422 -8.7816 18 1 5.1892 0.5475 -10.0183 19 1 6.7011 -0.9677 -8.8785 20 6 3.5154 1.0622 -4.0706 21 6 3.2237 0.6798 1.2347 22 6 3.1733 -0.6987 1.9184 23 6 3.2246 -1.3128 0.5094 24 1 2.1398 2.1938 -1.3729 25 1 3.1741 4.1149 -2.6585 26 1 3.9966 4.8163 -4.8669 27 1 4.5191 3.1402 -6.5831 28 1 6.7991 1.9058 -7.7674 29 1 3.3798 0.0145 -3.8460 30 1 4.2360 1.0490 1.0706 31 1 2.5713 1.4211 1.6961 32 1 2.2379 -0.8899 2.4442 33 1 4.0521 -0.9208 2.5237 34 1 2.5729 -2.1778 0.3861 35 1 4.2366 -1.4900 0.1455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313448607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:45 Heat of formation + Delta-G solvation = 34.204521 kcal Electronic energy + Delta-G solvation = -19591.873834 eV Core-core repulsion = 16555.391809 eV Total energy + Delta-G solvation = -3036.482025 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84192 -38.53728 -36.95921 -35.97820 -34.51119 -33.06524 -29.84735 -29.04298 -27.01566 -26.03365 -25.29714 -22.11721 -21.33615 -20.95312 -20.06182 -18.12809 -17.49959 -16.44682 -15.63612 -15.32907 -15.05776 -14.73996 -14.55291 -14.33995 -13.87507 -13.21336 -13.09150 -12.92037 -12.87817 -12.64048 -12.26687 -11.99115 -11.69453 -11.43750 -11.32413 -11.11964 -11.06838 -10.78337 -10.63114 -10.52579 -10.16353 -9.78255 -9.54312 -9.17718 -8.92937 -7.44761 -6.95692 -6.72009 -4.35010 2.19897 2.43033 2.61283 2.80725 3.10626 3.12927 3.16868 3.22704 3.44903 3.60280 3.98062 4.15993 4.27907 4.46926 4.64584 4.74021 5.09768 5.36934 5.48450 5.58286 5.64573 5.67535 5.74041 6.04634 6.19526 6.34423 6.64767 6.93317 6.99457 7.03783 7.22446 7.27060 7.47914 7.67684 7.90807 8.05535 8.08889 8.18637 8.52111 8.65783 8.91907 8.95541 10.24723 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.025207 B = 0.004644 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.555527 B = 6028.355793 C = 6495.455952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.230 3.770 3 C -0.023 4.023 4 C 0.526 3.474 5 O -0.493 6.493 6 N -0.661 5.661 7 C 0.148 3.852 8 C -0.257 4.257 9 C -0.092 4.092 10 C -0.166 4.166 11 C 0.122 3.878 12 C -0.461 4.461 13 H 0.078 0.922 14 C 0.077 3.923 15 N -0.797 5.797 16 Si 0.908 3.092 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.274 1.274 20 C -0.207 4.207 21 C -0.109 4.109 22 C -0.142 4.142 23 C -0.100 4.100 24 H 0.398 0.602 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.115 0.885 28 H 0.279 0.721 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.771 -1.212 13.163 13.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.085 5.085 2 C -0.088 4.088 3 C -0.031 4.031 4 C 0.309 3.691 5 O -0.366 6.366 6 N -0.304 5.304 7 C 0.056 3.944 8 C -0.279 4.279 9 C -0.111 4.111 10 C -0.186 4.186 11 C 0.119 3.881 12 C -0.491 4.491 13 H 0.096 0.904 14 C -0.141 4.141 15 N -0.422 5.422 16 Si 0.732 3.268 17 H -0.184 1.184 18 H -0.198 1.198 19 H -0.200 1.200 20 C -0.229 4.229 21 C -0.148 4.148 22 C -0.180 4.180 23 C -0.139 4.139 24 H 0.232 0.768 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.133 0.867 28 H 0.090 0.910 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.685 -1.618 12.653 13.278 hybrid contribution 0.210 -0.005 -0.523 0.564 sum -3.475 -1.622 12.130 12.722 Atomic orbital electron populations 1.81248 1.11860 1.07696 1.07731 1.27855 0.93442 0.93857 0.93672 1.19551 0.83315 1.03643 0.96541 1.19617 0.82920 0.81834 0.84698 1.90811 1.30185 1.54934 1.60680 1.43453 1.45805 1.22371 1.18787 1.17447 1.00644 0.93530 0.82753 1.20037 1.16417 0.92531 0.98877 1.20460 0.99484 0.97582 0.93558 1.21273 1.05499 0.92649 0.99172 1.17483 0.87784 0.92559 0.90268 1.19556 1.17584 1.02302 1.09646 0.90412 1.25866 0.94108 0.95214 0.98871 1.69831 1.12150 1.26896 1.33342 0.86270 0.79019 0.80466 0.81013 1.18438 1.19769 1.19985 1.20983 1.11873 0.97337 0.92690 1.23016 1.02321 0.97827 0.91609 1.22970 1.03219 0.95165 0.96630 1.22938 1.03164 0.93367 0.94399 0.76794 0.89167 0.88915 0.86746 0.90992 0.87477 0.87331 0.89777 0.89804 0.89706 0.90089 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.09 18.54 42.15 0.78 -5.31 16 2 C 0.23 2.99 13.81 -20.76 -0.29 2.71 16 3 C -0.02 -0.28 1.16 -157.63 -0.18 -0.46 16 4 C 0.53 8.80 6.62 -10.98 -0.07 8.72 16 5 O -0.49 -10.27 13.58 5.55 0.08 -10.20 16 6 N -0.66 -11.51 5.20 -9.91 -0.05 -11.56 16 7 C 0.15 3.27 6.28 -83.76 -0.53 2.75 16 8 C -0.26 -5.55 9.97 -39.10 -0.39 -5.94 16 9 C -0.09 -2.11 10.02 -39.69 -0.40 -2.50 16 10 C -0.17 -4.31 8.66 -38.84 -0.34 -4.64 16 11 C 0.12 3.32 5.52 -106.85 -0.59 2.73 16 12 C -0.46 -12.57 9.04 -37.74 -0.34 -12.91 16 13 H 0.08 2.07 7.89 -52.48 -0.41 1.66 16 14 C 0.08 1.96 5.15 -17.34 -0.09 1.87 16 15 N -0.80 -20.93 11.15 55.55 0.62 -20.31 16 16 Si 0.91 19.06 29.59 -169.99 -5.03 14.03 16 17 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 18 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 20 C -0.21 -5.29 8.39 -38.68 -0.32 -5.62 16 21 C -0.11 -0.91 7.21 -25.83 -0.19 -1.10 16 22 C -0.14 -1.03 7.80 -25.83 -0.20 -1.23 16 23 C -0.10 -0.99 6.97 -25.91 -0.18 -1.17 16 24 H 0.40 5.62 8.58 -40.82 -0.35 5.27 16 25 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 26 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 27 H 0.11 3.04 6.43 -52.48 -0.34 2.70 16 28 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 29 H 0.11 2.80 6.39 -52.48 -0.34 2.47 16 30 H 0.11 0.89 8.09 -51.93 -0.42 0.47 16 31 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.08 0.57 8.13 -51.93 -0.42 0.14 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 35 H 0.12 1.26 7.45 -51.93 -0.39 0.87 16 LS Contribution 307.65 15.07 4.64 4.64 Total: -1.00 -30.86 307.65 -6.98 -37.84 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -3.91 Total: 7.66 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -4.10 Total: -16.79 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 1.35 Total: -37.18 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.86 -6.98 -37.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313448607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.044 kcal (2) G-P(sol) polarization free energy of solvation -30.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds