Wall clock time and date at job start Mon Mar 30 2020 00:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.50698 * 112.84973 * 110.00217 * 3 2 1 5 5 O 1.21286 * 120.00524 * 230.33386 * 4 3 2 6 6 N 1.34780 * 119.99958 * 50.33390 * 4 3 2 7 7 C 1.39934 * 120.00058 * 185.09553 * 6 4 3 8 8 C 1.39295 * 119.94890 * 213.03901 * 7 6 4 9 9 C 1.38482 * 120.43002 * 179.74303 * 8 7 6 10 10 C 1.37685 * 120.32102 * 0.23084 * 9 8 7 11 11 C 1.40734 * 119.88805 * 0.02828 * 10 9 8 12 12 C 1.41406 * 120.21067 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99944 * 209.18266 * 12 11 10 14 14 C 1.39928 * 120.00485 * 29.17731 * 12 11 10 15 15 N 1.30838 * 119.99630 * 15.64276 * 14 12 11 16 16 Si 1.86798 * 120.00338 * 195.64387 * 14 12 11 17 17 H 1.48496 * 109.47168 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47131 * 119.99995 * 16 14 12 19 19 H 1.48504 * 109.46917 * 239.99719 * 16 14 12 20 20 C 1.38247 * 119.94991 * 33.29338 * 7 6 4 21 21 C 1.53784 * 113.61331 * 241.19691 * 3 2 1 22 22 C 1.53953 * 87.01743 * 89.23032 * 21 3 2 23 23 C 1.53784 * 113.61479 * 338.80768 * 3 2 1 24 24 H 0.97001 * 120.00374 * 5.08957 * 6 4 3 25 25 H 1.07996 * 119.78148 * 0.02562 * 8 7 6 26 26 H 1.08004 * 119.84101 * 180.25858 * 9 8 7 27 27 H 1.08007 * 120.05366 * 179.97438 * 10 9 8 28 28 H 0.96996 * 119.99881 * 179.97438 * 15 14 12 29 29 H 1.08004 * 120.15910 * 0.02562 * 20 7 6 30 30 H 1.09000 * 113.61138 * 203.74612 * 21 3 2 31 31 H 1.08994 * 113.61324 * 334.65265 * 21 3 2 32 32 H 1.08998 * 113.54103 * 270.81078 * 22 21 3 33 33 H 1.08999 * 113.74439 * 139.94083 * 22 21 3 34 34 H 1.09000 * 113.61457 * 25.34657 * 23 3 2 35 35 H 1.08997 * 113.61154 * 156.17066 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1929 0.4759 -1.3050 5 8 4.0466 -0.1813 -1.8621 6 7 2.7675 1.6314 -1.8530 7 6 3.2313 2.0198 -3.1148 8 6 3.4011 3.3710 -3.4077 9 6 3.8645 3.7663 -4.6514 10 6 4.1583 2.8271 -5.6144 11 6 3.9866 1.4586 -5.3348 12 6 4.2857 0.4882 -6.3189 13 1 3.7549 -0.4523 -6.3288 14 6 5.2693 0.7466 -7.2801 15 7 6.1171 1.7270 -7.1013 16 14 5.3719 -0.3081 -8.8184 17 1 4.3068 -1.3422 -8.7816 18 1 5.1892 0.5475 -10.0183 19 1 6.7011 -0.9677 -8.8785 20 6 3.5154 1.0622 -4.0706 21 6 3.2237 0.6798 1.2347 22 6 3.1733 -0.6987 1.9184 23 6 3.2246 -1.3128 0.5094 24 1 2.1398 2.1938 -1.3729 25 1 3.1741 4.1149 -2.6585 26 1 3.9966 4.8163 -4.8669 27 1 4.5191 3.1402 -6.5831 28 1 6.7991 1.9058 -7.7674 29 1 3.3798 0.0145 -3.8460 30 1 4.2360 1.0490 1.0706 31 1 2.5713 1.4211 1.6961 32 1 2.2379 -0.8899 2.4442 33 1 4.0521 -0.9208 2.5237 34 1 2.5729 -2.1778 0.3861 35 1 4.2366 -1.4900 0.1455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313448607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:45 Heat of formation + Delta-G solvation = 15.806825 kcal Electronic energy + Delta-G solvation = -19592.671618 eV Core-core repulsion = 16555.391809 eV Total energy + Delta-G solvation = -3037.279809 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.03857 -39.92138 -38.56412 -37.05503 -36.21027 -34.86376 -31.76527 -30.58451 -28.25470 -27.23897 -26.77151 -23.66693 -22.80613 -22.20595 -21.58832 -19.69456 -19.04828 -17.53089 -17.27738 -16.94308 -16.51089 -16.11040 -16.02558 -15.58504 -15.07261 -14.85620 -14.68406 -14.15247 -14.06645 -13.99285 -13.62648 -13.38001 -13.19204 -12.88227 -12.82533 -12.55736 -12.33615 -12.23060 -11.95140 -11.72574 -11.58108 -11.48995 -11.24173 -10.92363 -10.61648 -9.37758 -8.76489 -8.63005 -6.38078 0.72780 0.96956 1.31797 1.37014 1.38428 1.47112 1.52046 1.66293 2.13315 2.22571 2.53663 2.73531 3.31715 3.40802 3.63257 3.71373 3.78553 4.35613 4.44853 4.60410 4.71004 4.78631 4.92234 4.95892 4.99788 5.07144 5.10057 5.12803 5.18107 5.30275 5.38628 5.70331 5.81786 6.04447 6.08377 6.21841 6.32665 6.49389 6.66680 6.92114 6.98674 7.14549 8.36118 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.025207 B = 0.004644 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.555527 B = 6028.355793 C = 6495.455952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.249 3.751 3 C -0.022 4.022 4 C 0.526 3.474 5 O -0.538 6.538 6 N -0.655 5.655 7 C 0.154 3.846 8 C -0.245 4.245 9 C -0.091 4.091 10 C -0.191 4.191 11 C 0.091 3.909 12 C -0.505 4.505 13 H 0.065 0.935 14 C 0.038 3.962 15 N -0.828 5.828 16 Si 0.981 3.019 17 H -0.263 1.263 18 H -0.259 1.259 19 H -0.265 1.265 20 C -0.233 4.233 21 C -0.100 4.100 22 C -0.124 4.124 23 C -0.106 4.106 24 H 0.417 0.583 25 H 0.134 0.866 26 H 0.125 0.875 27 H 0.099 0.901 28 H 0.288 0.712 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.015 -0.361 15.156 15.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.069 4.069 3 C -0.029 4.029 4 C 0.311 3.689 5 O -0.414 6.414 6 N -0.300 5.300 7 C 0.061 3.939 8 C -0.266 4.266 9 C -0.109 4.109 10 C -0.211 4.211 11 C 0.089 3.911 12 C -0.535 4.535 13 H 0.083 0.917 14 C -0.177 4.177 15 N -0.454 5.454 16 Si 0.802 3.198 17 H -0.187 1.187 18 H -0.183 1.183 19 H -0.190 1.190 20 C -0.255 4.255 21 C -0.138 4.138 22 C -0.161 4.161 23 C -0.145 4.145 24 H 0.255 0.745 25 H 0.152 0.848 26 H 0.143 0.857 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.131 0.869 31 H 0.125 0.875 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.959 -0.745 14.695 15.238 hybrid contribution 0.254 -0.218 -1.012 1.066 sum -3.705 -0.963 13.684 14.209 Atomic orbital electron populations 1.81279 1.12732 1.08912 1.08619 1.27906 0.93366 0.92832 0.92775 1.19684 0.82567 1.05858 0.94791 1.20444 0.82052 0.80686 0.85683 1.90802 1.32336 1.55931 1.62292 1.43406 1.46046 1.23219 1.17287 1.17522 0.98995 0.93431 0.83910 1.20494 1.14002 0.92979 0.99126 1.20842 0.98069 0.98676 0.93347 1.21234 1.07393 0.92817 0.99650 1.17816 0.88768 0.93465 0.91097 1.19744 1.19363 1.02476 1.11922 0.91679 1.26676 0.92995 0.96567 1.01439 1.69867 1.12656 1.28306 1.34599 0.85180 0.79075 0.78623 0.76919 1.18708 1.18322 1.18955 1.20943 1.13879 0.97203 0.93463 1.23141 1.02589 0.99011 0.89084 1.22937 1.04879 0.93282 0.95019 1.23042 1.02404 0.92656 0.96402 0.74531 0.84813 0.85728 0.88313 0.90119 0.89491 0.86895 0.87522 0.88641 0.87495 0.89837 0.87477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -12.41 18.54 20.01 0.37 -12.04 16 2 C 0.25 6.03 13.81 89.44 1.23 7.26 16 3 C -0.02 -0.48 1.16 -54.21 -0.06 -0.54 16 4 C 0.53 17.30 6.62 87.66 0.58 17.88 16 5 O -0.54 -23.02 13.58 -3.05 -0.04 -23.06 16 6 N -0.65 -21.95 5.20 -303.64 -1.58 -23.53 16 7 C 0.15 6.78 6.28 38.10 0.24 7.02 16 8 C -0.25 -10.01 9.97 22.58 0.23 -9.79 16 9 C -0.09 -4.06 10.02 22.20 0.22 -3.83 16 10 C -0.19 -10.17 8.66 22.75 0.20 -9.98 16 11 C 0.09 5.21 5.52 -21.31 -0.12 5.09 16 12 C -0.51 -29.17 9.04 23.46 0.21 -28.95 16 13 H 0.07 3.74 7.89 -2.91 -0.02 3.71 16 14 C 0.04 1.99 5.15 85.25 0.44 2.43 16 15 N -0.83 -44.85 11.15 21.82 0.24 -44.61 16 16 Si 0.98 40.17 29.59 68.60 2.03 42.20 16 17 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 18 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 19 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 20 C -0.23 -12.40 8.39 22.85 0.19 -12.20 16 21 C -0.10 -1.32 7.21 31.18 0.22 -1.10 16 22 C -0.12 -1.35 7.80 31.18 0.24 -1.11 16 23 C -0.11 -1.93 6.97 31.12 0.22 -1.72 16 24 H 0.42 10.69 8.58 -92.71 -0.80 9.89 16 25 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 26 H 0.12 4.71 8.06 -2.91 -0.02 4.68 16 27 H 0.10 5.47 6.43 -2.91 -0.02 5.45 16 28 H 0.29 13.99 8.30 -92.71 -0.77 13.22 16 29 H 0.09 4.86 6.39 -2.91 -0.02 4.84 16 30 H 0.11 1.48 8.09 -2.39 -0.02 1.46 16 31 H 0.11 1.00 8.08 -2.39 -0.02 0.98 16 32 H 0.10 0.89 8.13 -2.39 -0.02 0.87 16 33 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 35 H 0.11 2.23 7.45 -2.39 -0.02 2.21 16 Total: -1.00 -71.08 307.65 5.40 -65.67 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.33 Total: 24.92 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 4.05 Total: -29.55 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -0.97 Total: -80.18 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.04 Total: -23.06 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -71.08 5.40 -65.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313448607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.478 kcal (2) G-P(sol) polarization free energy of solvation -71.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds