Wall clock time and date at job start Mon Mar 30 2020 01:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34661 * 125.80532 * 2 1 4 4 H 0.97006 * 124.84876 * 359.97134 * 3 2 1 5 5 C 1.36449 * 110.29840 * 180.24977 * 3 2 1 6 6 C 1.34481 * 108.86216 * 359.61034 * 5 3 2 7 7 C 1.36787 * 125.80013 * 180.02562 * 2 1 3 8 8 C 1.47235 * 126.94321 * 359.96199 * 7 2 1 9 9 O 1.21635 * 120.00439 * 359.97438 * 8 7 2 10 10 N 1.34787 * 119.99752 * 179.97438 * 8 7 2 11 11 C 1.39874 * 119.99781 * 174.89271 * 10 8 7 12 12 C 1.39305 * 119.94972 * 325.54556 * 11 10 8 13 13 C 1.38488 * 120.42398 * 179.71850 * 12 11 10 14 14 C 1.37679 * 120.32537 * 0.55873 * 13 12 11 15 15 C 1.40746 * 119.88605 * 359.72062 * 14 13 12 16 16 C 1.41415 * 120.20807 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99886 * 25.13371 * 16 15 14 18 18 C 1.39928 * 120.00041 * 205.13442 * 16 15 14 19 19 N 1.30830 * 119.99627 * 16.78665 * 18 16 15 20 20 Si 1.86799 * 120.00265 * 196.78582 * 18 16 15 21 21 H 1.48504 * 109.46729 * 60.00187 * 20 18 16 22 22 H 1.48495 * 109.47078 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47092 * 300.00090 * 20 18 16 24 24 C 1.38255 * 119.95000 * 145.81905 * 11 10 8 25 25 H 1.08999 * 109.47156 * 89.98123 * 1 2 3 26 26 H 1.08998 * 109.47474 * 209.97976 * 1 2 3 27 27 H 1.09000 * 109.47030 * 329.98136 * 1 2 3 28 28 H 1.08004 * 125.56795 * 179.74315 * 5 3 2 29 29 H 1.07999 * 126.83730 * 180.12235 * 6 5 3 30 30 H 0.96993 * 119.99952 * 354.90045 * 10 8 7 31 31 H 1.07998 * 119.78831 * 359.97438 * 12 11 10 32 32 H 1.08007 * 119.83465 * 180.25627 * 13 12 11 33 33 H 1.08005 * 120.05676 * 179.74142 * 14 13 12 34 34 H 0.97011 * 119.99574 * 179.97438 * 19 18 16 35 35 H 1.08002 * 120.15794 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2949 1.0921 0.0000 4 1 1.9735 2.0074 -0.0004 5 6 3.6097 0.7273 -0.0056 6 6 3.6884 -0.6152 -0.0006 7 6 2.3072 -1.1094 -0.0005 8 6 1.8704 -2.5155 -0.0003 9 8 0.6841 -2.7839 0.0007 10 7 2.7853 -3.5053 -0.0014 11 6 2.3740 -4.8379 0.1066 12 6 1.2658 -5.1627 0.8857 13 6 0.8465 -6.4781 0.9948 14 6 1.5280 -7.4813 0.3430 15 6 2.6529 -7.1689 -0.4430 16 6 3.3576 -8.1938 -1.1159 17 1 2.8546 -9.1131 -1.3772 18 6 4.7066 -8.0170 -1.4429 19 7 5.4035 -7.0766 -0.8584 20 14 5.5123 -9.1235 -2.7140 21 1 4.8066 -8.9810 -4.0129 22 1 6.9355 -8.7332 -2.8791 23 1 5.4352 -10.5356 -2.2611 24 6 3.0713 -5.8313 -0.5555 25 1 -0.3633 0.0003 -1.0277 26 1 -0.3634 -0.8901 0.5135 27 1 -0.3633 0.8898 0.5141 28 1 4.4499 1.4059 -0.0108 29 1 4.5892 -1.2110 -0.0012 30 1 3.7288 -3.2936 -0.0770 31 1 0.7277 -4.3833 1.4046 32 1 -0.0164 -6.7187 1.5981 33 1 1.1997 -8.5061 0.4345 34 1 6.3388 -6.9543 -1.0849 35 1 3.9330 -5.5810 -1.1566 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188159224.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:19 Heat of formation + Delta-G solvation = 22.919361 kcal Electronic energy + Delta-G solvation = -19480.904879 eV Core-core repulsion = 16443.933493 eV Total energy + Delta-G solvation = -3036.971386 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.18365 -39.05113 -36.94838 -34.12706 -33.19629 -31.49745 -31.07630 -29.44355 -28.25482 -26.23724 -25.15597 -22.87175 -21.12177 -20.83138 -19.99897 -18.93986 -17.67246 -17.22256 -16.05905 -15.33286 -14.99213 -14.82693 -14.55493 -13.87234 -13.82420 -13.43163 -13.00315 -12.89468 -12.72853 -12.60538 -12.49897 -12.23514 -11.56361 -11.51503 -11.14615 -11.05923 -10.64030 -10.57599 -9.94719 -9.63013 -9.28568 -9.10061 -8.81194 -8.79968 -8.16453 -7.28916 -6.89120 -6.59396 -4.29429 1.88393 2.43649 2.87363 3.04565 3.10297 3.12492 3.14032 3.31906 3.98651 4.03568 4.07025 4.73650 4.84130 4.98379 5.19793 5.35993 5.57199 5.65471 5.77355 5.89831 6.00496 6.24324 6.38474 6.74356 6.77802 6.82515 6.91498 7.06462 7.14423 7.20258 7.35263 7.41689 7.74121 7.83793 8.03329 8.12062 8.30681 8.47080 8.68135 8.95024 8.97376 9.08706 10.26598 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.024261 B = 0.004626 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.857286 B = 6051.923301 C = 6949.306579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.099 3.901 3 N -0.556 5.556 4 H 0.413 0.587 5 C -0.022 4.022 6 C -0.166 4.166 7 C -0.227 4.227 8 C 0.582 3.418 9 O -0.538 6.538 10 N -0.660 5.660 11 C 0.150 3.850 12 C -0.225 4.225 13 C -0.087 4.087 14 C -0.230 4.230 15 C 0.121 3.879 16 C -0.465 4.465 17 H 0.077 0.923 18 C 0.077 3.923 19 N -0.800 5.800 20 Si 0.907 3.093 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.183 4.183 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.168 0.832 29 H 0.146 0.854 30 H 0.401 0.599 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.279 0.721 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.806 15.332 0.653 15.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.018 4.018 3 N -0.152 5.152 4 H 0.249 0.751 5 C -0.149 4.149 6 C -0.191 4.191 7 C -0.237 4.237 8 C 0.371 3.629 9 O -0.416 6.416 10 N -0.302 5.302 11 C 0.058 3.942 12 C -0.246 4.246 13 C -0.106 4.106 14 C -0.250 4.250 15 C 0.118 3.882 16 C -0.495 4.495 17 H 0.095 0.905 18 C -0.139 4.139 19 N -0.426 5.426 20 Si 0.731 3.269 21 H -0.189 1.189 22 H -0.205 1.205 23 H -0.191 1.191 24 C -0.205 4.205 25 H 0.095 0.905 26 H 0.122 0.878 27 H 0.078 0.922 28 H 0.185 0.815 29 H 0.164 0.836 30 H 0.236 0.764 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.398 15.392 0.688 15.471 hybrid contribution 1.082 0.115 -0.591 1.238 sum -0.317 15.507 0.097 15.511 Atomic orbital electron populations 1.20567 0.87037 1.04099 1.03417 1.20326 0.93701 0.85588 1.02179 1.41558 1.06251 1.08222 1.59177 0.75066 1.21665 0.85600 0.96397 1.11288 1.22116 0.96061 0.93685 1.07224 1.20283 0.93194 0.92361 1.17902 1.17350 0.85587 0.83810 0.76122 1.90722 1.16506 1.84113 1.50277 1.43266 1.09740 1.05144 1.72083 1.17604 0.97005 0.81516 0.98064 1.20318 1.01355 0.95835 1.07139 1.20410 0.98131 0.92845 0.99195 1.21020 1.01983 0.96983 1.04998 1.17346 0.90285 0.91774 0.88827 1.19496 0.94669 1.02107 1.33267 0.90479 1.25854 0.97537 0.95427 0.95119 1.69818 1.08901 1.29249 1.34670 0.86398 0.77962 0.80845 0.81652 1.18926 1.20455 1.19081 1.21077 1.03580 0.91746 1.04049 0.90540 0.87819 0.92161 0.81501 0.83637 0.76414 0.88058 0.89132 0.88969 0.91065 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 9.88 36.01 0.36 -0.74 16 2 C 0.10 1.31 7.18 -81.87 -0.59 0.72 16 3 N -0.56 -5.36 5.90 -9.10 -0.05 -5.42 16 4 H 0.41 2.42 8.96 -40.82 -0.37 2.06 16 5 C -0.02 -0.23 11.89 -16.83 -0.20 -0.43 16 6 C -0.17 -2.17 10.56 -37.49 -0.40 -2.57 16 7 C -0.23 -3.65 6.29 -103.35 -0.65 -4.30 16 8 C 0.58 11.69 7.54 -12.60 -0.09 11.59 16 9 O -0.54 -12.13 12.55 5.25 0.07 -12.07 16 10 N -0.66 -13.73 5.32 -10.93 -0.06 -13.78 16 11 C 0.15 3.71 6.25 -83.78 -0.52 3.18 16 12 C -0.23 -5.60 8.66 -39.09 -0.34 -5.94 16 13 C -0.09 -2.11 10.01 -39.69 -0.40 -2.51 16 14 C -0.23 -5.90 9.79 -38.84 -0.38 -6.28 16 15 C 0.12 3.31 5.57 -106.85 -0.59 2.71 16 16 C -0.47 -12.57 9.05 -37.74 -0.34 -12.91 16 17 H 0.08 2.00 7.90 -52.48 -0.41 1.59 16 18 C 0.08 1.96 5.16 -17.35 -0.09 1.87 16 19 N -0.80 -20.59 10.94 55.55 0.61 -19.98 16 20 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16 21 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 C -0.18 -4.85 8.60 -38.68 -0.33 -5.18 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.10 1.49 6.46 -51.93 -0.34 1.15 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 29 H 0.15 1.70 7.70 -52.49 -0.40 1.29 16 30 H 0.40 7.31 7.96 -40.82 -0.32 6.99 16 31 H 0.10 2.48 6.47 -52.49 -0.34 2.14 16 32 H 0.09 1.93 8.06 -52.48 -0.42 1.50 16 33 H 0.09 2.21 8.06 -52.48 -0.42 1.78 16 34 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 35 H 0.12 3.26 6.17 -52.49 -0.32 2.93 16 LS Contribution 302.43 15.07 4.56 4.56 Total: -1.00 -32.00 302.43 -8.24 -40.24 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -3.76 Total: 13.38 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -4.57 Total: -20.77 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.50 Total: -39.18 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.07 Total: -12.07 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.00 -8.24 -40.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188159224.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.156 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds