Wall clock time and date at job start Mon Mar 30 2020 01:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34661 * 125.80532 * 2 1 4 4 H 0.97006 * 124.84876 * 359.97134 * 3 2 1 5 5 C 1.36449 * 110.29840 * 180.24977 * 3 2 1 6 6 C 1.34481 * 108.86216 * 359.61034 * 5 3 2 7 7 C 1.36787 * 125.80013 * 180.02562 * 2 1 3 8 8 C 1.47235 * 126.94321 * 359.96199 * 7 2 1 9 9 O 1.21635 * 120.00439 * 359.97438 * 8 7 2 10 10 N 1.34787 * 119.99752 * 179.97438 * 8 7 2 11 11 C 1.39874 * 119.99781 * 174.89271 * 10 8 7 12 12 C 1.39305 * 119.94972 * 325.54556 * 11 10 8 13 13 C 1.38488 * 120.42398 * 179.71850 * 12 11 10 14 14 C 1.37679 * 120.32537 * 0.55873 * 13 12 11 15 15 C 1.40746 * 119.88605 * 359.72062 * 14 13 12 16 16 C 1.41415 * 120.20807 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99886 * 25.13371 * 16 15 14 18 18 C 1.39928 * 120.00041 * 205.13442 * 16 15 14 19 19 N 1.30830 * 119.99627 * 16.78665 * 18 16 15 20 20 Si 1.86799 * 120.00265 * 196.78582 * 18 16 15 21 21 H 1.48504 * 109.46729 * 60.00187 * 20 18 16 22 22 H 1.48495 * 109.47078 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47092 * 300.00090 * 20 18 16 24 24 C 1.38255 * 119.95000 * 145.81905 * 11 10 8 25 25 H 1.08999 * 109.47156 * 89.98123 * 1 2 3 26 26 H 1.08998 * 109.47474 * 209.97976 * 1 2 3 27 27 H 1.09000 * 109.47030 * 329.98136 * 1 2 3 28 28 H 1.08004 * 125.56795 * 179.74315 * 5 3 2 29 29 H 1.07999 * 126.83730 * 180.12235 * 6 5 3 30 30 H 0.96993 * 119.99952 * 354.90045 * 10 8 7 31 31 H 1.07998 * 119.78831 * 359.97438 * 12 11 10 32 32 H 1.08007 * 119.83465 * 180.25627 * 13 12 11 33 33 H 1.08005 * 120.05676 * 179.74142 * 14 13 12 34 34 H 0.97011 * 119.99574 * 179.97438 * 19 18 16 35 35 H 1.08002 * 120.15794 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2949 1.0921 0.0000 4 1 1.9735 2.0074 -0.0004 5 6 3.6097 0.7273 -0.0056 6 6 3.6884 -0.6152 -0.0006 7 6 2.3072 -1.1094 -0.0005 8 6 1.8704 -2.5155 -0.0003 9 8 0.6841 -2.7839 0.0007 10 7 2.7853 -3.5053 -0.0014 11 6 2.3740 -4.8379 0.1066 12 6 1.2658 -5.1627 0.8857 13 6 0.8465 -6.4781 0.9948 14 6 1.5280 -7.4813 0.3430 15 6 2.6529 -7.1689 -0.4430 16 6 3.3576 -8.1938 -1.1159 17 1 2.8546 -9.1131 -1.3772 18 6 4.7066 -8.0170 -1.4429 19 7 5.4035 -7.0766 -0.8584 20 14 5.5123 -9.1235 -2.7140 21 1 4.8066 -8.9810 -4.0129 22 1 6.9355 -8.7332 -2.8791 23 1 5.4352 -10.5356 -2.2611 24 6 3.0713 -5.8313 -0.5555 25 1 -0.3633 0.0003 -1.0277 26 1 -0.3634 -0.8901 0.5135 27 1 -0.3633 0.8898 0.5141 28 1 4.4499 1.4059 -0.0108 29 1 4.5892 -1.2110 -0.0012 30 1 3.7288 -3.2936 -0.0770 31 1 0.7277 -4.3833 1.4046 32 1 -0.0164 -6.7187 1.5981 33 1 1.1997 -8.5061 0.4345 34 1 6.3388 -6.9543 -1.0849 35 1 3.9330 -5.5810 -1.1566 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188159224.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:19 Heat of formation + Delta-G solvation = 2.897406 kcal Electronic energy + Delta-G solvation = -19481.773096 eV Core-core repulsion = 16443.933493 eV Total energy + Delta-G solvation = -3037.839603 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.19675 -40.68738 -38.79056 -35.93387 -35.05585 -32.45347 -32.22113 -31.41146 -30.00582 -27.31151 -27.10842 -24.29831 -23.06235 -22.10227 -21.37734 -20.46420 -19.18208 -18.55603 -17.74206 -16.87439 -16.65395 -16.49650 -16.12697 -15.32538 -15.21058 -14.72390 -14.50844 -14.36238 -14.11032 -13.99753 -13.61571 -13.45694 -13.41137 -13.03157 -12.81065 -12.55995 -12.48174 -12.29490 -11.82183 -11.55098 -11.11495 -10.90497 -10.57763 -9.81964 -9.31092 -9.15804 -8.79044 -8.49998 -6.33660 0.58516 1.03351 1.13940 1.40946 1.51527 1.54198 1.59765 2.17684 2.23950 2.55186 2.62021 2.82383 3.74245 3.92842 4.04218 4.29181 4.31164 4.49247 4.66818 4.72413 4.75656 4.88068 4.97421 5.05803 5.14489 5.19805 5.23244 5.34024 5.39521 5.76656 5.83875 5.89018 5.98794 6.06826 6.11226 6.37267 6.61931 6.70628 6.82998 6.95955 7.01375 7.41363 8.37006 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.024261 B = 0.004626 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.857286 B = 6051.923301 C = 6949.306579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.105 3.895 3 N -0.534 5.534 4 H 0.436 0.564 5 C 0.006 3.994 6 C -0.195 4.195 7 C -0.273 4.273 8 C 0.577 3.423 9 O -0.572 6.572 10 N -0.660 5.660 11 C 0.154 3.846 12 C -0.241 4.241 13 C -0.083 4.083 14 C -0.250 4.250 15 C 0.093 3.907 16 C -0.501 4.501 17 H 0.077 0.923 18 C 0.038 3.962 19 N -0.823 5.823 20 Si 0.982 3.018 21 H -0.263 1.263 22 H -0.265 1.265 23 H -0.259 1.259 24 C -0.206 4.206 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.214 0.786 29 H 0.150 0.850 30 H 0.411 0.589 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.289 0.711 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.174 17.414 0.224 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.015 4.015 3 N -0.132 5.132 4 H 0.276 0.724 5 C -0.121 4.121 6 C -0.218 4.218 7 C -0.283 4.283 8 C 0.369 3.631 9 O -0.453 6.453 10 N -0.303 5.303 11 C 0.061 3.939 12 C -0.262 4.262 13 C -0.102 4.102 14 C -0.270 4.270 15 C 0.091 3.909 16 C -0.530 4.530 17 H 0.095 0.905 18 C -0.177 4.177 19 N -0.449 5.449 20 Si 0.803 3.197 21 H -0.188 1.188 22 H -0.190 1.190 23 H -0.184 1.184 24 C -0.228 4.228 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.230 0.770 29 H 0.168 0.832 30 H 0.247 0.753 31 H 0.120 0.880 32 H 0.139 0.861 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.408 17.536 0.275 17.543 hybrid contribution 0.764 -0.387 -0.410 0.949 sum 0.355 17.149 -0.136 17.153 Atomic orbital electron populations 1.20546 0.86300 1.04375 1.03753 1.20439 0.94366 0.85909 1.00790 1.41554 1.05872 1.08572 1.57183 0.72359 1.22289 0.86541 0.95817 1.07501 1.22297 0.94946 0.95331 1.09248 1.20151 0.95660 0.90605 1.21886 1.18022 0.84957 0.85271 0.74815 1.90685 1.17792 1.84932 1.51862 1.43269 1.10624 1.04025 1.72407 1.17718 0.96381 0.83032 0.96814 1.20483 1.01779 0.96241 1.07680 1.20729 0.98546 0.92293 0.98610 1.21208 1.02213 0.97923 1.05617 1.17759 0.91231 0.92483 0.89470 1.19782 0.95971 1.02393 1.34865 0.90467 1.26723 0.97475 0.96977 0.96549 1.69863 1.09633 1.30193 1.35214 0.85253 0.77295 0.78803 0.78339 1.18803 1.18951 1.18367 1.21021 1.04176 0.92158 1.05434 0.90116 0.90991 0.88393 0.76988 0.83210 0.75267 0.88016 0.86129 0.87917 0.90073 0.87030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.04 9.88 71.24 0.70 -1.33 16 2 C 0.10 2.58 7.18 41.79 0.30 2.88 16 3 N -0.53 -8.30 5.90 -182.70 -1.08 -9.38 16 4 H 0.44 3.04 8.96 -92.70 -0.83 2.20 16 5 C 0.01 0.10 11.89 83.11 0.99 1.09 16 6 C -0.19 -4.78 10.56 23.62 0.25 -4.53 16 7 C -0.27 -8.70 6.29 -19.04 -0.12 -8.82 16 8 C 0.58 23.95 7.54 86.61 0.65 24.61 16 9 O -0.57 -26.86 12.55 -4.14 -0.05 -26.92 16 10 N -0.66 -28.57 5.32 -306.73 -1.63 -30.21 16 11 C 0.15 7.91 6.25 38.12 0.24 8.14 16 12 C -0.24 -12.33 8.66 22.59 0.20 -12.13 16 13 C -0.08 -4.10 10.01 22.20 0.22 -3.88 16 14 C -0.25 -13.16 9.79 22.75 0.22 -12.94 16 15 C 0.09 5.31 5.57 -21.31 -0.12 5.19 16 16 C -0.50 -27.78 9.05 23.46 0.21 -27.57 16 17 H 0.08 4.12 7.90 -2.91 -0.02 4.10 16 18 C 0.04 1.92 5.16 85.25 0.44 2.36 16 19 N -0.82 -42.95 10.94 21.82 0.24 -42.71 16 20 Si 0.98 38.57 29.59 68.60 2.03 40.60 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 22 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 23 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 24 C -0.21 -11.39 8.60 22.85 0.20 -11.19 16 25 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 26 H 0.07 2.10 6.46 -2.39 -0.02 2.09 16 27 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.21 1.49 8.06 -2.91 -0.02 1.47 16 29 H 0.15 3.38 7.70 -2.91 -0.02 3.36 16 30 H 0.41 15.65 7.96 -92.71 -0.74 14.91 16 31 H 0.10 5.15 6.47 -2.91 -0.02 5.13 16 32 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 33 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 34 H 0.29 13.52 8.30 -92.70 -0.77 12.75 16 35 H 0.11 6.26 6.17 -2.91 -0.02 6.24 16 Total: -1.00 -72.56 302.43 3.46 -69.09 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: -0.42 Total: 37.64 kcal Atomic # 6 Polarization: -42.50 SS G_CDS: 4.38 Total: -38.11 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -2.47 Total: -82.30 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.05 Total: -26.92 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -72.56 3.46 -69.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188159224.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.990 kcal (2) G-P(sol) polarization free energy of solvation -72.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds