Wall clock time and date at job start Mon Mar 30 2020 01:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34480 * 125.57240 * 2 1 4 4 C 1.46694 * 106.33730 * 180.26408 * 3 2 1 5 5 C 1.47233 * 126.94772 * 179.97438 * 4 3 2 6 6 O 1.21640 * 119.99993 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00353 * 179.97438 * 5 4 3 8 8 C 1.39871 * 120.00184 * 174.87325 * 7 5 4 9 9 C 1.39308 * 119.94994 * 146.34166 * 8 7 5 10 10 C 1.38486 * 120.42666 * 179.97438 * 9 8 7 11 11 C 1.37693 * 120.32409 * 359.97438 * 10 9 8 12 12 C 1.40740 * 119.88708 * 0.02562 * 11 10 9 13 13 C 1.41406 * 120.21062 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00011 * 151.80447 * 13 12 11 15 15 C 1.39928 * 119.99797 * 331.81036 * 13 12 11 16 16 N 1.30831 * 120.00130 * 348.98261 * 15 13 12 17 17 Si 1.86807 * 119.99944 * 168.98624 * 15 13 12 18 18 H 1.48500 * 109.46842 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47046 * 119.99911 * 17 15 13 20 20 H 1.48499 * 109.46895 * 239.99746 * 17 15 13 21 21 C 1.38265 * 119.94896 * 326.06577 * 8 7 5 22 22 C 1.36790 * 106.11208 * 359.97438 * 4 3 2 23 23 N 1.34670 * 108.39224 * 0.02562 * 22 4 3 24 24 H 0.96993 * 124.84997 * 179.97438 * 23 22 4 25 25 H 1.09000 * 109.47577 * 269.71844 * 1 2 3 26 26 H 1.09008 * 109.47136 * 29.72066 * 1 2 3 27 27 H 1.08998 * 109.47258 * 149.71700 * 1 2 3 28 28 H 1.07997 * 126.83572 * 0.25932 * 3 2 1 29 29 H 0.97001 * 120.00170 * 354.86806 * 7 5 4 30 30 H 1.07993 * 119.78926 * 0.02562 * 9 8 7 31 31 H 1.08000 * 119.84258 * 180.02562 * 10 9 8 32 32 H 1.08000 * 120.05756 * 179.97438 * 11 10 9 33 33 H 0.97000 * 119.99994 * 180.02562 * 16 15 13 34 34 H 1.07995 * 120.15568 * 0.02562 * 21 8 7 35 35 H 1.08003 * 125.80387 * 180.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0938 0.0000 4 6 3.6743 0.6106 -0.0065 5 6 4.8975 1.4300 -0.0094 6 8 4.8166 2.6437 -0.0068 7 7 6.1070 0.8354 -0.0149 8 6 7.2665 1.6097 -0.1259 9 6 8.4321 1.2142 0.5265 10 6 9.5859 1.9731 0.4229 11 6 9.5935 3.1277 -0.3273 12 6 8.4234 3.5399 -0.9920 13 6 8.4234 4.7248 -1.7638 14 1 7.7511 4.8224 -2.6033 15 6 9.2947 5.7707 -1.4398 16 7 9.9513 5.7485 -0.3084 17 14 9.5203 7.1988 -2.6228 18 1 8.6715 6.9863 -3.8227 19 1 9.1240 8.4636 -1.9531 20 1 10.9450 7.2812 -3.0331 21 6 7.2557 2.7636 -0.8877 22 6 3.5998 -0.7553 -0.0093 23 7 2.3006 -1.1100 -0.0056 24 1 1.9756 -2.0238 -0.0069 25 1 -0.3634 -0.0050 1.0276 26 1 -0.3634 0.8925 -0.5095 27 1 -0.3634 -0.8874 -0.5182 28 1 1.9629 2.1233 0.0039 29 1 6.1735 -0.1296 0.0581 30 1 8.4363 0.3095 1.1161 31 1 10.4843 1.6574 0.9323 32 1 10.4956 3.7165 -0.4048 33 1 10.5549 6.4738 -0.0837 34 1 6.3537 3.0689 -1.3971 35 1 4.4400 -1.4339 -0.0137 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188198243.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:21 Heat of formation + Delta-G solvation = 25.212534 kcal Electronic energy + Delta-G solvation = -19175.467833 eV Core-core repulsion = 16138.595886 eV Total energy + Delta-G solvation = -3036.871946 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.21023 -39.11714 -36.91710 -34.28155 -32.94664 -31.82696 -31.03359 -29.71749 -28.13748 -26.11282 -25.19566 -23.15158 -20.98599 -20.60536 -20.28868 -18.87007 -17.98792 -17.21891 -15.97450 -15.39007 -14.99837 -14.86336 -14.50701 -14.06673 -14.00470 -13.54442 -13.02225 -12.94802 -12.76966 -12.67557 -12.45676 -12.10497 -11.76247 -11.58404 -11.22182 -11.04230 -10.53771 -10.40948 -10.04052 -9.62992 -9.35712 -9.06687 -8.78753 -8.74627 -8.23391 -7.32105 -6.76718 -6.57200 -4.25427 1.83411 2.38293 2.86172 3.05474 3.11940 3.16518 3.22999 3.28234 3.85965 4.03881 4.07781 4.74810 4.77726 4.85263 5.03262 5.21343 5.31371 5.61746 5.64654 5.80960 5.92664 6.08787 6.32580 6.47318 6.73590 6.88432 6.92003 7.12702 7.17203 7.19686 7.34563 7.37900 7.70363 7.84482 8.07402 8.19967 8.31394 8.42088 8.75926 8.93245 9.05725 9.09427 10.35919 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.027368 B = 0.004070 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.851502 B = 6877.477342 C = 7711.066141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.000 4.000 3 C -0.137 4.137 4 C -0.213 4.213 5 C 0.575 3.425 6 O -0.518 6.518 7 N -0.668 5.668 8 C 0.153 3.847 9 C -0.260 4.260 10 C -0.095 4.095 11 C -0.169 4.169 12 C 0.118 3.882 13 C -0.457 4.457 14 H 0.076 0.924 15 C 0.073 3.927 16 N -0.802 5.802 17 Si 0.911 3.089 18 H -0.261 1.261 19 H -0.275 1.275 20 H -0.274 1.274 21 C -0.206 4.206 22 C 0.039 3.961 23 N -0.550 5.550 24 H 0.413 0.587 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.148 0.852 29 H 0.394 0.606 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.277 0.723 34 H 0.107 0.893 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.667 -13.533 0.513 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C -0.162 4.162 4 C -0.224 4.224 5 C 0.363 3.637 6 O -0.393 6.393 7 N -0.312 5.312 8 C 0.061 3.939 9 C -0.281 4.281 10 C -0.114 4.114 11 C -0.189 4.189 12 C 0.115 3.885 13 C -0.488 4.488 14 H 0.095 0.905 15 C -0.143 4.143 16 N -0.429 5.429 17 Si 0.735 3.265 18 H -0.185 1.185 19 H -0.200 1.200 20 H -0.199 1.199 21 C -0.228 4.228 22 C -0.097 4.097 23 N -0.146 5.146 24 H 0.249 0.751 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.165 0.835 29 H 0.227 0.773 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.139 0.861 33 H 0.088 0.912 34 H 0.125 0.875 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -12.678 -12.608 0.633 17.891 hybrid contribution 0.131 -0.300 -0.253 0.414 sum -12.547 -12.908 0.380 18.006 Atomic orbital electron populations 1.20297 0.87813 1.03244 1.02597 1.20257 0.93519 0.86010 1.11172 1.21759 0.90201 0.98013 1.06197 1.20600 0.93942 0.92163 1.15710 1.17453 0.82151 0.87422 0.76629 1.90836 1.86633 1.13664 1.48164 1.43297 1.05014 1.09518 1.73354 1.17425 0.84519 0.93761 0.98194 1.20053 0.94238 1.03749 1.10059 1.20471 0.95809 0.95705 0.99399 1.21402 0.99075 0.96048 1.02351 1.17513 0.89625 0.91307 0.90016 1.19583 1.17768 0.98631 1.12797 0.90535 1.25876 0.93891 0.99625 0.94913 1.69819 1.21671 1.31559 1.19824 0.86225 0.78764 0.80370 0.81101 1.18497 1.20040 1.19892 1.21019 0.98303 0.98157 1.05307 1.21892 0.86438 0.95747 1.05576 1.41470 1.05762 1.08561 1.58819 0.75100 0.91112 0.89991 0.91919 0.83476 0.77270 0.89378 0.89104 0.86103 0.91173 0.87477 0.81113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.41 36.00 0.37 -0.19 16 2 C 0.00 0.00 7.13 -81.87 -0.58 -0.59 16 3 C -0.14 -1.97 10.86 -37.50 -0.41 -2.38 16 4 C -0.21 -3.34 6.29 -103.35 -0.65 -3.99 16 5 C 0.58 11.67 7.54 -12.61 -0.10 11.57 16 6 O -0.52 -13.05 14.68 5.24 0.08 -12.97 16 7 N -0.67 -12.80 5.32 -10.93 -0.06 -12.86 16 8 C 0.15 3.63 6.26 -83.78 -0.52 3.11 16 9 C -0.26 -5.92 9.97 -39.09 -0.39 -6.31 16 10 C -0.09 -2.28 10.02 -39.69 -0.40 -2.68 16 11 C -0.17 -4.58 8.66 -38.84 -0.34 -4.91 16 12 C 0.12 3.37 5.55 -106.85 -0.59 2.78 16 13 C -0.46 -13.00 9.06 -37.74 -0.34 -13.34 16 14 H 0.08 2.12 7.87 -52.49 -0.41 1.71 16 15 C 0.07 1.94 5.25 -17.35 -0.09 1.85 16 16 N -0.80 -21.86 10.81 55.55 0.60 -21.26 16 17 Si 0.91 19.80 29.57 -169.99 -5.03 14.77 16 18 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 C -0.21 -5.61 8.39 -38.68 -0.32 -5.93 16 22 C 0.04 0.42 11.41 -16.83 -0.19 0.23 16 23 N -0.55 -4.82 5.90 -9.11 -0.05 -4.87 16 24 H 0.41 2.03 8.96 -40.82 -0.37 1.67 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 29 H 0.39 5.71 7.78 -40.82 -0.32 5.39 16 30 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 32 H 0.12 3.35 6.18 -52.49 -0.32 3.03 16 33 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 34 H 0.11 3.02 6.44 -52.49 -0.34 2.68 16 35 H 0.17 1.28 7.46 -52.48 -0.39 0.89 16 LS Contribution 305.99 15.07 4.61 4.61 Total: -1.00 -34.80 305.99 -8.22 -43.02 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -3.82 Total: 10.32 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -4.55 Total: -20.77 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.49 Total: -38.99 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.97 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.80 -8.22 -43.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188198243.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.236 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds