Wall clock time and date at job start Mon Mar 30 2020 01:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34480 * 125.57240 * 2 1 4 4 C 1.46694 * 106.33730 * 180.26408 * 3 2 1 5 5 C 1.47233 * 126.94772 * 179.97438 * 4 3 2 6 6 O 1.21640 * 119.99993 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00353 * 179.97438 * 5 4 3 8 8 C 1.39871 * 120.00184 * 174.87325 * 7 5 4 9 9 C 1.39308 * 119.94994 * 146.34166 * 8 7 5 10 10 C 1.38486 * 120.42666 * 179.97438 * 9 8 7 11 11 C 1.37693 * 120.32409 * 359.97438 * 10 9 8 12 12 C 1.40740 * 119.88708 * 0.02562 * 11 10 9 13 13 C 1.41406 * 120.21062 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00011 * 151.80447 * 13 12 11 15 15 C 1.39928 * 119.99797 * 331.81036 * 13 12 11 16 16 N 1.30831 * 120.00130 * 348.98261 * 15 13 12 17 17 Si 1.86807 * 119.99944 * 168.98624 * 15 13 12 18 18 H 1.48500 * 109.46842 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47046 * 119.99911 * 17 15 13 20 20 H 1.48499 * 109.46895 * 239.99746 * 17 15 13 21 21 C 1.38265 * 119.94896 * 326.06577 * 8 7 5 22 22 C 1.36790 * 106.11208 * 359.97438 * 4 3 2 23 23 N 1.34670 * 108.39224 * 0.02562 * 22 4 3 24 24 H 0.96993 * 124.84997 * 179.97438 * 23 22 4 25 25 H 1.09000 * 109.47577 * 269.71844 * 1 2 3 26 26 H 1.09008 * 109.47136 * 29.72066 * 1 2 3 27 27 H 1.08998 * 109.47258 * 149.71700 * 1 2 3 28 28 H 1.07997 * 126.83572 * 0.25932 * 3 2 1 29 29 H 0.97001 * 120.00170 * 354.86806 * 7 5 4 30 30 H 1.07993 * 119.78926 * 0.02562 * 9 8 7 31 31 H 1.08000 * 119.84258 * 180.02562 * 10 9 8 32 32 H 1.08000 * 120.05756 * 179.97438 * 11 10 9 33 33 H 0.97000 * 119.99994 * 180.02562 * 16 15 13 34 34 H 1.07995 * 120.15568 * 0.02562 * 21 8 7 35 35 H 1.08003 * 125.80387 * 180.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0938 0.0000 4 6 3.6743 0.6106 -0.0065 5 6 4.8975 1.4300 -0.0094 6 8 4.8166 2.6437 -0.0068 7 7 6.1070 0.8354 -0.0149 8 6 7.2665 1.6097 -0.1259 9 6 8.4321 1.2142 0.5265 10 6 9.5859 1.9731 0.4229 11 6 9.5935 3.1277 -0.3273 12 6 8.4234 3.5399 -0.9920 13 6 8.4234 4.7248 -1.7638 14 1 7.7511 4.8224 -2.6033 15 6 9.2947 5.7707 -1.4398 16 7 9.9513 5.7485 -0.3084 17 14 9.5203 7.1988 -2.6228 18 1 8.6715 6.9863 -3.8227 19 1 9.1240 8.4636 -1.9531 20 1 10.9450 7.2812 -3.0331 21 6 7.2557 2.7636 -0.8877 22 6 3.5998 -0.7553 -0.0093 23 7 2.3006 -1.1100 -0.0056 24 1 1.9756 -2.0238 -0.0069 25 1 -0.3634 -0.0050 1.0276 26 1 -0.3634 0.8925 -0.5095 27 1 -0.3634 -0.8874 -0.5182 28 1 1.9629 2.1233 0.0039 29 1 6.1735 -0.1296 0.0581 30 1 8.4363 0.3095 1.1161 31 1 10.4843 1.6574 0.9323 32 1 10.4956 3.7165 -0.4048 33 1 10.5549 6.4738 -0.0837 34 1 6.3537 3.0689 -1.3971 35 1 4.4400 -1.4339 -0.0137 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188198243.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:21 Heat of formation + Delta-G solvation = 1.332003 kcal Electronic energy + Delta-G solvation = -19176.503370 eV Core-core repulsion = 16138.595886 eV Total energy + Delta-G solvation = -3037.907484 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.19750 -40.76494 -38.80479 -36.15067 -34.81748 -32.65926 -32.10379 -31.73375 -29.86263 -27.29792 -26.99159 -24.55129 -22.86211 -22.36847 -21.25307 -20.40481 -19.57406 -18.46453 -17.51288 -17.19382 -16.69324 -16.45929 -16.10684 -15.37809 -15.20063 -14.86735 -14.70578 -14.59012 -13.98723 -13.64316 -13.59955 -13.41834 -13.31735 -13.11277 -12.84046 -12.65096 -12.52200 -12.19731 -11.97830 -11.55956 -11.23486 -10.93570 -10.61557 -9.83235 -9.35244 -9.16102 -8.67280 -8.55979 -6.38085 0.60418 0.97678 1.16485 1.35864 1.43515 1.50868 1.52086 2.21087 2.24784 2.43539 2.56489 2.79620 3.74628 3.95765 4.00999 4.22566 4.38697 4.48120 4.63508 4.66994 4.82273 4.91684 5.08000 5.09200 5.12488 5.15059 5.15877 5.29346 5.35567 5.71718 5.80922 5.88480 5.94726 6.08704 6.13458 6.37333 6.66077 6.69886 6.78680 6.95388 7.02193 7.44032 8.38543 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.027368 B = 0.004070 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.851502 B = 6877.477342 C = 7711.066141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.023 3.977 3 C -0.186 4.186 4 C -0.266 4.266 5 C 0.571 3.429 6 O -0.584 6.584 7 N -0.654 5.654 8 C 0.157 3.843 9 C -0.246 4.246 10 C -0.092 4.092 11 C -0.194 4.194 12 C 0.087 3.913 13 C -0.504 4.504 14 H 0.063 0.937 15 C 0.032 3.968 16 N -0.832 5.832 17 Si 0.987 3.013 18 H -0.263 1.263 19 H -0.266 1.266 20 H -0.255 1.255 21 C -0.236 4.236 22 C 0.079 3.921 23 N -0.528 5.528 24 H 0.438 0.562 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.125 0.875 29 H 0.420 0.580 30 H 0.136 0.864 31 H 0.126 0.874 32 H 0.107 0.893 33 H 0.287 0.713 34 H 0.079 0.921 35 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.397 -16.857 1.115 21.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 C -0.210 4.210 4 C -0.276 4.276 5 C 0.363 3.637 6 O -0.465 6.465 7 N -0.299 5.299 8 C 0.064 3.936 9 C -0.267 4.267 10 C -0.111 4.111 11 C -0.214 4.214 12 C 0.085 3.915 13 C -0.534 4.534 14 H 0.081 0.919 15 C -0.182 4.182 16 N -0.459 5.459 17 Si 0.808 3.192 18 H -0.187 1.187 19 H -0.191 1.191 20 H -0.179 1.179 21 C -0.258 4.258 22 C -0.059 4.059 23 N -0.125 5.125 24 H 0.280 0.720 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.143 0.857 29 H 0.258 0.742 30 H 0.154 0.846 31 H 0.144 0.856 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -13.440 -16.037 1.250 20.961 hybrid contribution 0.225 0.529 -0.354 0.675 sum -13.215 -15.508 0.896 20.394 Atomic orbital electron populations 1.20439 0.84905 1.04624 1.03931 1.20608 0.95056 0.85187 1.07865 1.21802 0.90885 0.98594 1.09675 1.20304 0.92196 0.94064 1.21080 1.18223 0.83510 0.87130 0.74801 1.90798 1.87534 1.16803 1.51318 1.43119 1.03507 1.10496 1.72787 1.17546 0.86550 0.92971 0.96553 1.20511 0.92824 1.04622 1.08698 1.20875 0.97726 0.94385 0.98101 1.21376 0.98137 0.97686 1.04192 1.17850 0.90683 0.91986 0.90997 1.19786 1.19645 1.00327 1.13635 0.91899 1.26748 0.92849 1.01998 0.96560 1.69863 1.22070 1.32881 1.21102 0.85098 0.79397 0.76443 0.78310 1.18726 1.19095 1.17947 1.20962 0.97095 1.00410 1.07346 1.22325 0.88251 0.94125 1.01196 1.41504 1.04878 1.09544 1.56554 0.72040 0.89698 0.90100 0.89087 0.85742 0.74191 0.84634 0.85586 0.87465 0.90207 0.90243 0.76922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.41 71.23 0.74 -0.12 16 2 C 0.02 0.43 7.13 40.98 0.29 0.72 16 3 C -0.19 -5.43 10.86 23.62 0.26 -5.17 16 4 C -0.27 -8.23 6.29 -19.04 -0.12 -8.35 16 5 C 0.57 23.97 7.54 86.61 0.65 24.62 16 6 O -0.58 -31.83 14.68 -4.16 -0.06 -31.89 16 7 N -0.65 -24.63 5.32 -306.74 -1.63 -26.26 16 8 C 0.16 7.52 6.26 38.12 0.24 7.76 16 9 C -0.25 -10.66 9.97 22.59 0.23 -10.44 16 10 C -0.09 -4.34 10.02 22.20 0.22 -4.11 16 11 C -0.19 -10.85 8.66 22.75 0.20 -10.65 16 12 C 0.09 5.29 5.55 -21.31 -0.12 5.17 16 13 C -0.50 -30.65 9.06 23.46 0.21 -30.44 16 14 H 0.06 3.81 7.87 -2.91 -0.02 3.78 16 15 C 0.03 1.75 5.25 85.25 0.45 2.20 16 16 N -0.83 -46.96 10.81 21.82 0.24 -46.72 16 17 Si 0.99 42.03 29.57 68.60 2.03 44.06 16 18 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 21 C -0.24 -13.64 8.39 22.86 0.19 -13.44 16 22 C 0.08 1.43 11.41 83.92 0.96 2.39 16 23 N -0.53 -6.96 5.90 -182.74 -1.08 -8.04 16 24 H 0.44 1.80 8.96 -92.71 -0.83 0.97 16 25 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.12 4.03 8.06 -2.91 -0.02 4.01 16 29 H 0.42 10.91 7.78 -92.71 -0.72 10.19 16 30 H 0.14 4.61 8.06 -2.91 -0.02 4.59 16 31 H 0.13 4.98 8.06 -2.91 -0.02 4.96 16 32 H 0.11 6.19 6.18 -2.91 -0.02 6.17 16 33 H 0.29 14.51 8.30 -92.71 -0.77 13.74 16 34 H 0.08 4.92 6.44 -2.91 -0.02 4.90 16 35 H 0.21 1.95 7.46 -2.91 -0.02 1.93 16 Total: -1.00 -84.84 305.99 3.48 -81.36 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: -0.41 Total: 27.36 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 4.40 Total: -39.87 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -2.48 Total: -81.02 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.06 Total: -31.89 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -84.84 3.48 -81.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188198243.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.697 kcal (2) G-P(sol) polarization free energy of solvation -84.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds