Wall clock time and date at job start Mon Mar 30 2020 00:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38409 * 119.92146 * 2 1 4 4 C 1.38373 * 120.29594 * 179.97438 * 3 2 1 5 5 C 1.37955 * 120.14882 * 359.79282 * 4 3 2 6 6 C 1.39614 * 119.84712 * 0.48045 * 5 4 3 7 7 C 1.47890 * 120.14977 * 179.77155 * 6 5 4 8 8 C 1.39047 * 120.31806 * 64.72507 * 7 6 5 9 9 C 1.38403 * 119.95905 * 180.02562 * 8 7 6 10 10 F 1.35098 * 119.69561 * 180.02562 * 9 8 7 11 11 C 1.39210 * 120.60962 * 359.97042 * 9 8 7 12 12 C 1.36353 * 120.65071 * 0.02562 * 11 9 8 13 13 C 1.40793 * 120.01762 * 0.29105 * 12 11 9 14 14 C 1.40820 * 120.30215 * 179.72836 * 13 12 11 15 15 H 1.07998 * 120.00357 * 151.39444 * 14 13 12 16 16 C 1.40047 * 119.99894 * 331.39643 * 14 13 12 17 17 N 1.30804 * 120.00267 * 160.81211 * 16 14 13 18 18 Si 1.86803 * 119.99863 * 340.81293 * 16 14 13 19 19 H 1.48495 * 109.47276 * 95.47038 * 18 16 14 20 20 H 1.48508 * 109.47191 * 215.46847 * 18 16 14 21 21 H 1.48501 * 109.47389 * 335.46711 * 18 16 14 22 22 C 1.37908 * 119.92419 * 180.02562 * 2 1 3 23 23 C 1.50695 * 120.07535 * 359.97438 * 22 2 1 24 24 H 1.08998 * 109.47127 * 269.98102 * 1 2 3 25 25 H 1.08996 * 109.46842 * 29.97851 * 1 2 3 26 26 H 1.09000 * 109.46968 * 149.97805 * 1 2 3 27 27 H 1.07999 * 119.85491 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.92935 * 180.02562 * 4 3 2 29 29 H 1.07999 * 120.07711 * 180.23547 * 5 4 3 30 30 H 1.08001 * 120.02065 * 0.02562 * 8 7 6 31 31 H 1.07996 * 119.67556 * 180.02562 * 11 9 8 32 32 H 1.07994 * 119.99310 * 180.02562 * 12 11 9 33 33 H 0.96995 * 119.99752 * 179.97438 * 17 16 14 34 34 H 1.09002 * 109.47491 * 270.02124 * 23 22 2 35 35 H 1.08996 * 109.47463 * 30.02301 * 23 22 2 36 36 H 1.09004 * 109.47135 * 150.02427 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1996 0.0000 4 6 3.5812 1.2086 0.0005 5 6 4.2818 0.0203 0.0054 6 6 3.5916 -1.1933 -0.0004 7 6 4.3360 -2.4712 -0.0003 8 6 5.1277 -2.8223 1.0875 9 6 5.8215 -4.0198 1.0795 10 9 6.5887 -4.3559 2.1395 11 6 5.7354 -4.8817 -0.0103 12 6 4.9665 -4.5622 -1.0901 13 6 4.2545 -3.3478 -1.1133 14 6 3.4631 -3.0093 -2.2278 15 1 2.5964 -2.3773 -2.1027 16 6 3.8001 -3.4922 -3.4984 17 7 2.9036 -3.5088 -4.4508 18 14 5.5300 -4.1126 -3.8333 19 1 5.5687 -5.5872 -3.6628 20 1 5.9203 -3.7646 -5.2233 21 1 6.4763 -3.4791 -2.8802 22 6 2.1950 -1.1952 -0.0005 23 6 1.4416 -2.5003 -0.0005 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6538 2.1328 0.0004 28 1 4.1139 2.1481 0.0009 29 1 5.3618 0.0287 0.0096 30 1 5.2010 -2.1610 1.9383 31 1 6.2829 -5.8125 -0.0005 32 1 4.9070 -5.2389 -1.9297 33 1 3.1371 -3.8429 -5.3309 34 1 1.2599 -2.8150 1.0271 35 1 0.4892 -2.3700 -0.5143 36 1 2.0306 -3.2600 -0.5144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239715092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:56 Heat of formation + Delta-G solvation = -17.546500 kcal Electronic energy + Delta-G solvation = -20263.250270 eV Core-core repulsion = 17204.604191 eV Total energy + Delta-G solvation = -3058.646079 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.65633 -39.32569 -37.40754 -33.78608 -32.83009 -32.40936 -30.31912 -29.06658 -26.95630 -25.83976 -24.82825 -22.57460 -21.32891 -20.08540 -19.64780 -17.69022 -16.62934 -15.61128 -15.27522 -15.10603 -14.85091 -14.38380 -14.17022 -13.87794 -13.59822 -13.15764 -12.81604 -12.51212 -12.39481 -12.26677 -12.11715 -12.02133 -11.86241 -11.28536 -11.11668 -10.92860 -10.83431 -10.58930 -10.32991 -10.20453 -10.08577 -9.60207 -9.28417 -8.23194 -7.95850 -7.76940 -7.41681 -7.14200 -4.61482 1.85658 2.00347 2.35337 2.47693 2.98989 3.10398 3.20601 3.83311 4.21931 4.37404 5.13438 5.32614 5.34303 5.46392 5.60560 5.67850 5.70826 5.83701 5.88181 5.91143 6.01694 6.14702 6.20533 6.36242 6.39323 6.46181 6.60636 6.62050 6.68252 6.92531 6.98078 7.06971 7.07922 7.18116 7.28857 7.38370 7.45231 7.63502 7.72947 7.93276 8.18600 8.45153 8.59290 9.85011 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.008952 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.481684 B = 3126.984103 C = 4292.385232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.136 4.136 4 C -0.128 4.128 5 C -0.120 4.120 6 C 0.016 3.984 7 C -0.145 4.145 8 C -0.084 4.084 9 C -0.054 4.054 10 F -0.171 7.171 11 C -0.096 4.096 12 C -0.217 4.217 13 C 0.098 3.902 14 C -0.429 4.429 15 H 0.109 0.891 16 C 0.085 3.915 17 N -0.788 5.788 18 Si 0.906 3.094 19 H -0.268 1.268 20 H -0.288 1.288 21 H -0.242 1.242 22 C -0.065 4.065 23 C -0.129 4.129 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.289 0.711 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 4.014 4.252 5.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.154 4.154 4 C -0.146 4.146 5 C -0.138 4.138 6 C 0.016 3.984 7 C -0.146 4.146 8 C -0.103 4.103 9 C -0.073 4.073 10 F -0.150 7.150 11 C -0.115 4.115 12 C -0.236 4.236 13 C 0.095 3.905 14 C -0.455 4.455 15 H 0.126 0.874 16 C -0.137 4.137 17 N -0.411 5.411 18 Si 0.732 3.268 19 H -0.194 1.194 20 H -0.215 1.215 21 H -0.165 1.165 22 C -0.065 4.065 23 C -0.185 4.185 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.133 0.867 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.449 3.982 4.004 5.830 hybrid contribution 0.908 -0.301 -0.226 0.983 sum -0.541 3.681 3.778 5.303 Atomic orbital electron populations 1.20800 0.92026 1.02499 1.01552 1.19606 0.95465 0.92773 1.01596 1.20832 0.94149 0.96760 1.03639 1.20867 0.94121 0.97430 1.02176 1.21211 0.99416 0.91739 1.01472 1.18494 0.91754 0.92213 0.95984 1.18273 1.04486 0.94807 0.97057 1.20599 0.96944 0.94932 0.97860 1.17045 1.04156 0.98685 0.87463 1.91303 1.74816 1.93022 1.55861 1.20364 0.99425 0.98167 0.93545 1.20601 1.05568 0.98494 0.98940 1.17614 0.90485 0.89690 0.92756 1.19731 1.10310 1.25344 0.90153 0.87362 1.26274 0.99453 0.91930 0.96010 1.69671 1.35014 1.32234 1.04132 0.86396 0.82957 0.79735 0.77729 1.19377 1.21506 1.16516 1.19847 0.92957 0.94615 0.99076 1.21144 1.00121 0.95912 1.01323 0.91901 0.92291 0.91129 0.87182 0.87009 0.86654 0.87490 0.87721 0.87249 0.90058 0.92559 0.92163 0.88231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 9.60 36.01 0.35 -1.22 16 2 C -0.09 -1.63 5.87 -104.68 -0.61 -2.24 16 3 C -0.14 -2.20 9.70 -39.47 -0.38 -2.58 16 4 C -0.13 -2.11 10.03 -39.64 -0.40 -2.51 16 5 C -0.12 -2.26 9.74 -39.17 -0.38 -2.64 16 6 C 0.02 0.32 4.67 -104.90 -0.49 -0.17 16 7 C -0.14 -3.21 4.65 -104.24 -0.48 -3.70 16 8 C -0.08 -1.80 9.70 -39.22 -0.38 -2.19 16 9 C -0.05 -1.18 7.31 -39.16 -0.29 -1.46 16 10 F -0.17 -3.62 17.26 2.25 0.04 -3.58 16 11 C -0.10 -2.07 9.94 -39.90 -0.40 -2.47 16 12 C -0.22 -4.95 7.13 -39.30 -0.28 -5.23 16 13 C 0.10 2.31 4.10 -106.55 -0.44 1.87 16 14 C -0.43 -10.60 7.68 -37.93 -0.29 -10.89 16 15 H 0.11 2.79 5.33 -52.49 -0.28 2.51 16 16 C 0.09 2.07 5.40 -17.31 -0.09 1.98 16 17 N -0.79 -19.52 13.93 55.55 0.77 -18.74 16 18 Si 0.91 19.58 24.51 -169.99 -4.17 15.42 16 19 H -0.27 -5.58 6.69 56.52 0.38 -5.20 16 20 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.24 -5.43 6.88 56.52 0.39 -5.04 16 22 C -0.06 -1.27 4.91 -104.21 -0.51 -1.78 16 23 C -0.13 -2.43 8.34 36.00 0.30 -2.13 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 26 H 0.07 0.99 5.94 -51.93 -0.31 0.68 16 27 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 28 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 30 H 0.11 2.09 8.06 -52.49 -0.42 1.67 16 31 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.11 2.44 4.63 -52.49 -0.24 2.20 16 33 H 0.29 6.48 8.29 -40.82 -0.34 6.15 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.03 5.94 -51.93 -0.31 0.72 16 36 H 0.10 2.13 4.33 -51.93 -0.22 1.91 16 LS Contribution 294.25 15.07 4.43 4.43 Total: -1.00 -25.67 294.25 -7.62 -33.29 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -3.91 Total: 6.52 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: -4.78 Total: -37.34 kcal Atomic # 7 Polarization: -19.52 SS G_CDS: 0.77 Total: -18.74 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.04 Total: -3.58 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.17 Total: 15.42 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -25.67 -7.62 -33.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239715092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.741 kcal (2) G-P(sol) polarization free energy of solvation -25.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds