Wall clock time and date at job start Mon Mar 30 2020 00:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38409 * 119.92146 * 2 1 4 4 C 1.38373 * 120.29594 * 179.97438 * 3 2 1 5 5 C 1.37955 * 120.14882 * 359.79282 * 4 3 2 6 6 C 1.39614 * 119.84712 * 0.48045 * 5 4 3 7 7 C 1.47890 * 120.14977 * 179.77155 * 6 5 4 8 8 C 1.39047 * 120.31806 * 64.72507 * 7 6 5 9 9 C 1.38403 * 119.95905 * 180.02562 * 8 7 6 10 10 F 1.35098 * 119.69561 * 180.02562 * 9 8 7 11 11 C 1.39210 * 120.60962 * 359.97042 * 9 8 7 12 12 C 1.36353 * 120.65071 * 0.02562 * 11 9 8 13 13 C 1.40793 * 120.01762 * 0.29105 * 12 11 9 14 14 C 1.40820 * 120.30215 * 179.72836 * 13 12 11 15 15 H 1.07998 * 120.00357 * 151.39444 * 14 13 12 16 16 C 1.40047 * 119.99894 * 331.39643 * 14 13 12 17 17 N 1.30804 * 120.00267 * 160.81211 * 16 14 13 18 18 Si 1.86803 * 119.99863 * 340.81293 * 16 14 13 19 19 H 1.48495 * 109.47276 * 95.47038 * 18 16 14 20 20 H 1.48508 * 109.47191 * 215.46847 * 18 16 14 21 21 H 1.48501 * 109.47389 * 335.46711 * 18 16 14 22 22 C 1.37908 * 119.92419 * 180.02562 * 2 1 3 23 23 C 1.50695 * 120.07535 * 359.97438 * 22 2 1 24 24 H 1.08998 * 109.47127 * 269.98102 * 1 2 3 25 25 H 1.08996 * 109.46842 * 29.97851 * 1 2 3 26 26 H 1.09000 * 109.46968 * 149.97805 * 1 2 3 27 27 H 1.07999 * 119.85491 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.92935 * 180.02562 * 4 3 2 29 29 H 1.07999 * 120.07711 * 180.23547 * 5 4 3 30 30 H 1.08001 * 120.02065 * 0.02562 * 8 7 6 31 31 H 1.07996 * 119.67556 * 180.02562 * 11 9 8 32 32 H 1.07994 * 119.99310 * 180.02562 * 12 11 9 33 33 H 0.96995 * 119.99752 * 179.97438 * 17 16 14 34 34 H 1.09002 * 109.47491 * 270.02124 * 23 22 2 35 35 H 1.08996 * 109.47463 * 30.02301 * 23 22 2 36 36 H 1.09004 * 109.47135 * 150.02427 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1975 1.1996 0.0000 4 6 3.5812 1.2086 0.0005 5 6 4.2818 0.0203 0.0054 6 6 3.5916 -1.1933 -0.0004 7 6 4.3360 -2.4712 -0.0003 8 6 5.1277 -2.8223 1.0875 9 6 5.8215 -4.0198 1.0795 10 9 6.5887 -4.3559 2.1395 11 6 5.7354 -4.8817 -0.0103 12 6 4.9665 -4.5622 -1.0901 13 6 4.2545 -3.3478 -1.1133 14 6 3.4631 -3.0093 -2.2278 15 1 2.5964 -2.3773 -2.1027 16 6 3.8001 -3.4922 -3.4984 17 7 2.9036 -3.5088 -4.4508 18 14 5.5300 -4.1126 -3.8333 19 1 5.5687 -5.5872 -3.6628 20 1 5.9203 -3.7646 -5.2233 21 1 6.4763 -3.4791 -2.8802 22 6 2.1950 -1.1952 -0.0005 23 6 1.4416 -2.5003 -0.0005 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6538 2.1328 0.0004 28 1 4.1139 2.1481 0.0009 29 1 5.3618 0.0287 0.0096 30 1 5.2010 -2.1610 1.9383 31 1 6.2829 -5.8125 -0.0005 32 1 4.9070 -5.2389 -1.9297 33 1 3.1371 -3.8429 -5.3309 34 1 1.2599 -2.8150 1.0271 35 1 0.4892 -2.3700 -0.5143 36 1 2.0306 -3.2600 -0.5144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239715092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:56 Heat of formation + Delta-G solvation = -28.080477 kcal Electronic energy + Delta-G solvation = -20263.707058 eV Core-core repulsion = 17204.604191 eV Total energy + Delta-G solvation = -3059.102866 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.112 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.39117 -40.80782 -39.01824 -35.57235 -34.18669 -33.90652 -32.08015 -30.63161 -28.35986 -27.18899 -26.54994 -24.18789 -23.02705 -21.45704 -21.20720 -19.49210 -18.26670 -17.29433 -16.73253 -16.65906 -16.42880 -16.07970 -15.81104 -15.37004 -15.08120 -14.71788 -14.53142 -13.99800 -13.80790 -13.76960 -13.70778 -13.37784 -13.31124 -12.72194 -12.70766 -12.46728 -12.44046 -12.13866 -12.10073 -11.70183 -11.57636 -11.32274 -11.02717 -9.82794 -9.47230 -9.31055 -9.03241 -8.94657 -6.45519 0.34208 0.59868 0.63439 0.84834 1.25128 1.37896 1.46432 2.07977 2.45581 2.96233 3.36356 3.73472 4.01311 4.07747 4.17427 4.18462 4.28170 4.37534 4.44034 4.61575 4.72604 4.78129 4.84541 4.88810 4.92999 4.94393 5.11866 5.18696 5.22036 5.27751 5.39713 5.55524 5.58649 5.60339 5.72159 5.83362 5.84938 6.01793 6.17310 6.30720 6.35989 6.67480 6.76442 8.09116 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.008952 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.481684 B = 3126.984103 C = 4292.385232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.102 4.102 3 C -0.133 4.133 4 C -0.125 4.125 5 C -0.137 4.137 6 C -0.018 4.018 7 C -0.139 4.139 8 C -0.092 4.092 9 C -0.053 4.053 10 F -0.165 7.165 11 C -0.100 4.100 12 C -0.229 4.229 13 C 0.087 3.913 14 C -0.448 4.448 15 H 0.088 0.912 16 C 0.056 3.944 17 N -0.823 5.823 18 Si 0.948 3.052 19 H -0.255 1.255 20 H -0.278 1.278 21 H -0.257 1.257 22 C -0.087 4.087 23 C -0.123 4.123 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.112 0.888 33 H 0.296 0.704 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.163 5.198 5.102 7.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.102 4.102 3 C -0.151 4.151 4 C -0.143 4.143 5 C -0.155 4.155 6 C -0.018 4.018 7 C -0.141 4.141 8 C -0.111 4.111 9 C -0.072 4.072 10 F -0.145 7.145 11 C -0.119 4.119 12 C -0.248 4.248 13 C 0.083 3.917 14 C -0.476 4.476 15 H 0.106 0.894 16 C -0.163 4.163 17 N -0.448 5.448 18 Si 0.772 3.228 19 H -0.180 1.180 20 H -0.205 1.205 21 H -0.181 1.181 22 C -0.087 4.087 23 C -0.179 4.179 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.163 0.837 28 H 0.162 0.838 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.149 0.851 32 H 0.129 0.871 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.290 5.159 4.856 7.201 hybrid contribution 0.844 -0.576 -0.326 1.072 sum -0.446 4.583 4.529 6.459 Atomic orbital electron populations 1.20846 0.89731 1.03172 1.02916 1.20031 0.97322 0.92376 1.00497 1.21283 0.94272 0.97733 1.01781 1.21246 0.94627 0.97831 1.00558 1.21368 0.99795 0.92103 1.02198 1.18629 0.92522 0.92200 0.98404 1.18561 1.03761 0.95298 0.96442 1.20813 0.96812 0.95216 0.98253 1.17239 1.03711 0.98732 0.87558 1.91316 1.74617 1.92972 1.55571 1.20602 0.99264 0.99159 0.92900 1.20710 1.06075 0.98411 0.99626 1.17777 0.90597 0.90290 0.92991 1.19657 1.10583 1.26277 0.91071 0.89405 1.26782 1.01680 0.92057 0.95748 1.69685 1.36191 1.34054 1.04820 0.85748 0.79551 0.79922 0.77556 1.18014 1.20454 1.18052 1.19999 0.92811 0.95630 1.00217 1.21041 1.00055 0.95267 1.01542 0.90059 0.90266 0.91820 0.83704 0.83770 0.86430 0.85858 0.85137 0.87058 0.89287 0.91630 0.91146 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.81 9.60 71.24 0.68 -2.13 16 2 C -0.10 -3.35 5.87 -19.90 -0.12 -3.47 16 3 C -0.13 -3.90 9.70 22.34 0.22 -3.68 16 4 C -0.12 -3.81 10.03 22.23 0.22 -3.59 16 5 C -0.14 -5.02 9.74 22.53 0.22 -4.80 16 6 C -0.02 -0.73 4.67 -20.05 -0.09 -0.82 16 7 C -0.14 -6.23 4.65 -19.62 -0.09 -6.32 16 8 C -0.09 -3.89 9.70 22.50 0.22 -3.67 16 9 C -0.05 -2.24 7.31 22.54 0.16 -2.08 16 10 F -0.17 -6.72 17.26 44.97 0.78 -5.94 16 11 C -0.10 -4.22 9.94 22.06 0.22 -4.00 16 12 C -0.23 -10.43 7.13 22.46 0.16 -10.27 16 13 C 0.09 4.15 4.10 -21.12 -0.09 4.07 16 14 C -0.45 -22.88 7.68 23.34 0.18 -22.71 16 15 H 0.09 4.75 5.33 -2.91 -0.02 4.73 16 16 C 0.06 2.76 5.40 85.28 0.46 3.22 16 17 N -0.82 -41.75 13.93 21.85 0.30 -41.44 16 18 Si 0.95 40.34 24.51 68.60 1.68 42.02 16 19 H -0.25 -10.20 6.69 99.48 0.67 -9.54 16 20 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 21 H -0.26 -11.41 6.88 99.48 0.68 -10.72 16 22 C -0.09 -3.37 4.91 -19.60 -0.10 -3.46 16 23 C -0.12 -4.71 8.34 71.23 0.59 -4.12 16 24 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.08 1.69 8.08 -2.39 -0.02 1.67 16 26 H 0.06 1.71 5.94 -2.39 -0.01 1.69 16 27 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 28 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 29 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 30 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 31 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 32 H 0.11 4.95 4.63 -2.91 -0.01 4.94 16 33 H 0.30 13.55 8.29 -92.71 -0.77 12.78 16 34 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.07 2.46 5.94 -2.39 -0.01 2.45 16 36 H 0.07 3.10 4.33 -2.38 -0.01 3.09 16 Total: -1.00 -55.22 294.25 6.66 -48.56 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 1.04 Total: 24.62 kcal Atomic # 6 Polarization: -70.67 SS G_CDS: 2.85 Total: -67.82 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.30 Total: -41.44 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.78 Total: -5.94 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 1.68 Total: 42.02 kcal Total: -55.22 6.66 -48.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239715092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.483 kcal (2) G-P(sol) polarization free energy of solvation -55.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds