Wall clock time and date at job start Mon Mar 30 2020 01:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38449 * 119.83443 * 2 1 4 4 C 1.37899 * 120.20063 * 180.02562 * 3 2 1 5 5 C 1.39617 * 119.88105 * 359.97438 * 4 3 2 6 6 C 1.47933 * 120.16151 * 179.97438 * 5 4 3 7 7 C 1.39986 * 119.87924 * 64.99694 * 6 5 4 8 8 C 1.36223 * 120.11381 * 179.97438 * 7 6 5 9 9 C 1.40955 * 119.87778 * 0.29782 * 8 7 6 10 10 C 1.41013 * 120.11275 * 179.70579 * 9 8 7 11 11 H 1.08001 * 120.00104 * 24.57250 * 10 9 8 12 12 C 1.39996 * 120.00197 * 204.57460 * 10 9 8 13 13 N 1.30807 * 119.99960 * 17.81981 * 12 10 9 14 14 Si 1.86799 * 120.00247 * 197.81901 * 12 10 9 15 15 H 1.48500 * 109.47184 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47019 * 119.99887 * 14 12 10 17 17 H 1.48500 * 109.47188 * 239.99530 * 14 12 10 18 18 C 1.40923 * 119.77319 * 359.44705 * 9 8 7 19 19 C 1.36256 * 119.87639 * 0.51183 * 18 9 8 20 20 C 1.50700 * 119.94111 * 179.76408 * 19 18 9 21 21 C 1.39830 * 119.67977 * 0.26829 * 5 4 3 22 22 F 1.35099 * 120.10407 * 179.72709 * 21 5 4 23 23 C 1.38231 * 119.79214 * 359.47504 * 21 5 4 24 24 H 1.09000 * 109.47521 * 89.99950 * 1 2 3 25 25 H 1.09001 * 109.47329 * 210.00013 * 1 2 3 26 26 H 1.09001 * 109.47375 * 329.99702 * 1 2 3 27 27 H 1.08000 * 119.90292 * 0.02562 * 3 2 1 28 28 H 1.08008 * 120.05936 * 179.97438 * 4 3 2 29 29 H 1.07995 * 119.94387 * 359.97438 * 7 6 5 30 30 H 1.08004 * 120.05666 * 180.02562 * 8 7 6 31 31 H 0.97001 * 120.00619 * 180.02562 * 13 12 10 32 32 H 1.07993 * 120.06117 * 180.29924 * 18 9 8 33 33 H 1.08999 * 109.47262 * 270.02645 * 20 19 18 34 34 H 1.09011 * 109.46813 * 30.02242 * 20 19 18 35 35 H 1.09002 * 109.47082 * 150.01834 * 20 19 18 36 36 H 1.07994 * 119.94227 * 180.25287 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2010 0.0000 4 6 3.5747 1.2098 -0.0005 5 6 4.2780 0.0037 -0.0005 6 6 5.7573 0.0059 -0.0017 7 6 6.4548 0.5205 1.0976 8 6 7.8170 0.5244 1.1018 9 6 8.5241 0.0149 -0.0060 10 6 9.9342 0.0222 -0.0095 11 1 10.4765 0.0302 0.9244 12 6 10.6312 0.0191 -1.2236 13 7 10.0198 0.3565 -2.3296 14 14 12.4345 -0.4668 -1.2642 15 1 12.8876 -0.8028 0.1095 16 1 12.6088 -1.6492 -2.1455 17 1 13.2403 0.6648 -1.7889 18 6 7.8170 -0.5069 -1.1077 19 6 6.4545 -0.5068 -1.1014 20 6 5.6968 -1.0596 -2.2811 21 6 3.5773 -1.2064 -0.0057 22 9 4.2492 -2.3784 -0.0113 23 6 2.1950 -1.1996 0.0003 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.6515 2.1338 0.0004 28 1 4.1097 2.1481 -0.0009 29 1 5.9120 0.9150 1.9438 30 1 8.3542 0.9213 1.9506 31 1 10.5025 0.3541 -3.1710 32 1 8.3541 -0.9029 -1.9568 33 1 5.5126 -0.2619 -3.0007 34 1 6.2844 -1.8468 -2.7537 35 1 4.7457 -1.4700 -1.9420 36 1 1.6515 -2.1328 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241355708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:06 Heat of formation + Delta-G solvation = -33.564683 kcal Electronic energy + Delta-G solvation = -19696.393095 eV Core-core repulsion = 16637.052415 eV Total energy + Delta-G solvation = -3059.340680 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.77189 -40.40053 -39.17545 -35.95205 -33.97306 -33.26036 -31.41779 -31.21521 -28.45264 -27.67891 -25.98917 -23.66855 -23.09550 -22.00979 -21.28783 -19.06235 -18.00456 -17.36523 -17.25073 -16.95045 -16.68576 -15.59486 -15.46342 -15.17695 -14.87071 -14.41296 -14.34489 -14.26034 -14.19507 -13.66120 -13.45310 -13.12402 -13.01563 -12.93492 -12.80437 -12.58082 -12.50063 -12.25581 -12.16712 -11.86891 -11.42867 -11.29657 -11.02228 -9.80493 -9.56446 -9.29602 -8.98907 -8.67230 -6.36877 0.20779 0.33991 0.91637 1.14835 1.36411 1.47573 1.52220 2.17910 2.61571 2.74191 3.40918 3.64314 3.91660 3.96869 4.10710 4.33232 4.34078 4.37581 4.48233 4.60820 4.75515 4.79080 4.87433 4.92803 4.95324 5.03435 5.10792 5.20696 5.26771 5.31034 5.33739 5.45832 5.55937 5.61905 5.70740 5.92661 6.07768 6.12240 6.20815 6.33213 6.64353 6.87926 6.99993 8.26999 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.039363 B = 0.004446 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.153543 B = 6296.982002 C = 6465.086953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.071 4.071 3 C -0.122 4.122 4 C -0.098 4.098 5 C -0.055 4.055 6 C -0.198 4.198 7 C -0.068 4.068 8 C -0.249 4.249 9 C 0.087 3.913 10 C -0.494 4.494 11 H 0.077 0.923 12 C 0.036 3.964 13 N -0.817 5.817 14 Si 0.984 3.016 15 H -0.258 1.258 16 H -0.264 1.264 17 H -0.263 1.263 18 C -0.191 4.191 19 C -0.055 4.055 20 C -0.100 4.100 21 C 0.073 3.927 22 F -0.153 7.153 23 C -0.157 4.157 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.157 0.843 28 H 0.128 0.872 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.290 0.710 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.524 0.103 1.090 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.072 4.072 3 C -0.140 4.140 4 C -0.116 4.116 5 C -0.056 4.056 6 C -0.200 4.200 7 C -0.086 4.086 8 C -0.269 4.269 9 C 0.085 3.915 10 C -0.522 4.522 11 H 0.095 0.905 12 C -0.180 4.180 13 N -0.442 5.442 14 Si 0.804 3.196 15 H -0.181 1.181 16 H -0.188 1.188 17 H -0.187 1.187 18 C -0.211 4.211 19 C -0.056 4.056 20 C -0.156 4.156 21 C 0.054 3.946 22 F -0.132 7.132 23 C -0.175 4.175 24 H 0.102 0.898 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.175 0.825 28 H 0.146 0.854 29 H 0.131 0.869 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.469 0.103 0.836 14.493 hybrid contribution 1.549 -0.387 -0.107 1.600 sum -12.920 -0.284 0.729 12.943 Atomic orbital electron populations 1.20840 0.87812 1.04185 1.03557 1.20135 0.98022 0.91294 0.97704 1.21331 0.92917 0.99142 1.00620 1.21357 0.94812 0.96449 0.98964 1.18944 0.92568 0.92582 1.01463 1.18107 0.90750 1.14058 0.97047 1.20537 0.93667 0.97884 0.96520 1.20841 0.94206 1.10743 1.01101 1.18027 0.94073 0.87786 0.91611 1.19870 0.92021 1.46234 0.94123 0.90454 1.26824 1.05663 0.91377 0.94136 1.69879 1.40714 1.32901 1.00703 0.85137 0.75749 0.78985 0.79719 1.18129 1.18848 1.18719 1.20811 0.92675 1.06799 1.00806 1.19582 0.93594 0.97302 0.95089 1.20717 0.99330 0.99971 0.95626 1.18195 0.90775 0.80514 1.05094 1.91427 1.81377 1.46343 1.94029 1.21151 0.90690 1.00759 1.04932 0.89816 0.90505 0.89696 0.82521 0.85360 0.86912 0.88234 0.89924 0.88042 0.91824 0.92616 0.91811 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.00 71.23 0.71 -0.72 16 2 C -0.07 -1.58 5.89 -19.80 -0.12 -1.70 16 3 C -0.12 -2.88 9.68 22.24 0.22 -2.66 16 4 C -0.10 -3.06 9.74 22.52 0.22 -2.84 16 5 C -0.05 -2.09 4.62 -19.99 -0.09 -2.18 16 6 C -0.20 -9.18 5.04 -19.87 -0.10 -9.28 16 7 C -0.07 -3.19 9.66 22.22 0.21 -2.97 16 8 C -0.25 -12.87 9.73 22.47 0.22 -12.65 16 9 C 0.09 4.93 5.57 -21.28 -0.12 4.81 16 10 C -0.49 -27.33 9.03 23.38 0.21 -27.12 16 11 H 0.08 4.13 7.91 -2.91 -0.02 4.10 16 12 C 0.04 1.84 5.13 85.27 0.44 2.28 16 13 N -0.82 -43.30 10.96 21.84 0.24 -43.06 16 14 Si 0.98 38.58 29.60 68.60 2.03 40.61 16 15 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 16 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 17 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 18 C -0.19 -10.58 8.26 22.47 0.19 -10.39 16 19 C -0.06 -2.74 5.70 -19.91 -0.11 -2.85 16 20 C -0.10 -4.19 9.46 71.24 0.67 -3.52 16 21 C 0.07 2.60 5.75 22.65 0.13 2.73 16 22 F -0.15 -6.12 15.53 44.97 0.70 -5.42 16 23 C -0.16 -4.22 9.66 22.28 0.22 -4.00 16 24 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 26 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 27 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 28 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 29 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 30 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 31 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 32 H 0.10 5.83 6.17 -2.91 -0.02 5.81 16 33 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.05 2.26 8.08 -2.38 -0.02 2.24 16 35 H 0.06 2.50 4.70 -2.39 -0.01 2.49 16 36 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -63.55 308.23 6.95 -56.60 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 1.09 Total: 24.34 kcal Atomic # 6 Polarization: -75.96 SS G_CDS: 2.89 Total: -73.07 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.24 Total: -43.06 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.70 Total: -5.42 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -63.55 6.95 -56.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241355708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.040 kcal (2) G-P(sol) polarization free energy of solvation -63.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds