Wall clock time and date at job start Mon Mar 30 2020 01:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47083 * 2 1 4 4 C 1.38750 * 119.96054 * 124.97615 * 3 2 1 5 5 C 1.38623 * 118.07063 * 179.72571 * 4 3 2 6 6 C 1.39774 * 117.88323 * 0.52817 * 5 4 3 7 7 C 1.48255 * 120.18328 * 179.75987 * 6 5 4 8 8 C 1.39475 * 120.04943 * 179.72145 * 7 6 5 9 9 C 1.37813 * 119.94121 * 179.97438 * 8 7 6 10 10 C 1.39024 * 120.05623 * 0.25191 * 9 8 7 11 11 O 1.35678 * 119.94369 * 179.72333 * 10 9 8 12 12 C 1.34807 * 117.00213 * 354.45439 * 11 10 9 13 13 H 1.07995 * 120.00231 * 5.05535 * 12 11 10 14 14 C 1.38668 * 119.99845 * 185.05733 * 12 11 10 15 15 N 1.31550 * 120.00039 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99842 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47365 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47413 * 119.99945 * 16 14 12 19 19 H 1.48496 * 109.47219 * 239.99888 * 16 14 12 20 20 C 1.39018 * 120.10367 * 359.49626 * 10 9 8 21 21 C 1.37812 * 120.05637 * 0.50375 * 20 10 9 22 22 N 1.32768 * 119.62543 * 359.48841 * 6 5 4 23 23 N 1.28350 * 122.02965 * 0.24463 * 22 6 5 24 24 H 1.08999 * 109.47122 * 60.00367 * 1 2 3 25 25 H 1.09002 * 109.47430 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47584 * 300.00138 * 1 2 3 27 27 H 1.08996 * 109.46922 * 239.99574 * 2 1 3 28 28 H 1.09007 * 109.46842 * 120.00181 * 2 1 3 29 29 H 1.08005 * 120.96645 * 359.97438 * 4 3 2 30 30 H 1.07995 * 121.06016 * 180.26043 * 5 4 3 31 31 H 1.07989 * 120.02876 * 359.96157 * 8 7 6 32 32 H 1.08000 * 119.97465 * 179.97438 * 9 8 7 33 33 H 0.96998 * 119.99653 * 180.02562 * 15 14 12 34 34 H 1.08002 * 119.96959 * 180.23283 * 20 10 9 35 35 H 1.07995 * 120.02828 * 179.77306 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9129 1.8444 0.9850 5 6 3.3546 3.1578 0.9442 6 6 2.8753 3.9770 -0.0819 7 6 3.3100 5.3916 -0.1709 8 6 2.8345 6.2050 -1.1993 9 6 3.2396 7.5198 -1.2796 10 6 4.1255 8.0340 -0.3397 11 8 4.5273 9.3272 -0.4242 12 6 4.1226 10.0245 -1.5046 13 1 3.4407 9.5765 -2.2122 14 6 4.5819 11.3171 -1.7075 15 7 5.4129 11.8627 -0.8460 16 14 4.0206 12.2835 -3.2043 17 1 3.0940 11.4507 -4.0124 18 1 3.3214 13.5171 -2.7634 19 1 5.2007 12.6509 -4.0274 20 6 4.5967 7.2267 0.6893 21 6 4.1946 5.9113 0.7738 22 7 2.0328 3.4797 -0.9795 23 7 1.6338 2.2605 -0.9364 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.2478 1.1694 1.7587 30 1 4.0436 3.5372 1.6842 31 1 2.1496 5.8048 -1.9321 32 1 2.8721 8.1500 -2.0759 33 1 5.7339 12.7669 -0.9878 34 1 5.2820 7.6295 1.4204 35 1 4.5638 5.2835 1.5712 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590930.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:38 Heat of formation + Delta-G solvation = 42.488497 kcal Electronic energy + Delta-G solvation = -18836.465778 eV Core-core repulsion = 15800.342974 eV Total energy + Delta-G solvation = -3036.122804 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.86614 -39.08367 -36.79880 -34.79682 -33.17366 -32.44315 -31.09040 -30.31703 -28.25579 -25.71506 -25.05847 -24.12634 -22.37359 -21.46841 -20.96426 -18.16234 -17.43813 -17.15031 -16.35691 -15.74585 -15.01866 -14.68598 -14.45727 -14.21302 -13.91060 -13.90669 -13.77372 -13.21787 -12.83169 -12.74318 -12.44030 -11.99026 -11.81170 -11.64828 -11.38863 -11.30995 -11.08284 -10.79577 -10.55796 -10.50535 -10.13418 -9.64653 -9.57891 -9.32390 -8.89579 -8.34723 -7.21897 -6.62676 -4.17878 0.78265 0.95033 2.13736 2.30269 3.05358 3.07352 3.13164 3.74806 3.84859 4.06779 4.44523 4.53087 4.62032 4.68514 4.93386 4.96778 5.01420 5.09499 5.16903 5.22819 5.46875 5.61474 5.64592 5.65559 5.79746 5.85306 5.99764 6.06578 6.16715 6.32219 6.34895 6.50935 6.79110 6.91370 7.09404 7.25058 7.28896 7.63231 7.83196 8.82545 8.95292 9.48826 10.54123 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.044987 B = 0.003309 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.249627 B = 8458.822793 C = 9006.963570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.062 4.062 3 C 0.035 3.965 4 C -0.113 4.113 5 C -0.128 4.128 6 C 0.149 3.851 7 C -0.169 4.169 8 C -0.019 4.019 9 C -0.242 4.242 10 C 0.168 3.832 11 O -0.164 6.164 12 C -0.391 4.391 13 H 0.098 0.902 14 C 0.041 3.959 15 N -0.854 5.854 16 Si 0.945 3.055 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.196 4.196 21 C -0.046 4.046 22 N -0.253 5.253 23 N -0.234 5.234 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.123 0.877 32 H 0.133 0.867 33 H 0.273 0.727 34 H 0.123 0.877 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 -17.401 3.511 18.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.101 4.101 3 C -0.110 4.110 4 C -0.141 4.141 5 C -0.157 4.157 6 C 0.008 3.992 7 C -0.173 4.173 8 C -0.039 4.039 9 C -0.262 4.262 10 C 0.111 3.889 11 O -0.065 6.065 12 C -0.467 4.467 13 H 0.115 0.885 14 C -0.165 4.165 15 N -0.487 5.487 16 Si 0.769 3.231 17 H -0.188 1.188 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.215 4.215 21 C -0.065 4.065 22 N -0.096 5.096 23 N -0.076 5.076 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.161 0.839 30 H 0.166 0.834 31 H 0.141 0.859 32 H 0.150 0.850 33 H 0.083 0.917 34 H 0.141 0.859 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.972 -16.747 2.318 17.623 hybrid contribution 0.697 0.268 0.655 0.993 sum -4.275 -16.479 2.973 17.283 Atomic orbital electron populations 1.21701 0.94111 1.01689 1.02858 1.20342 0.96996 0.89761 1.03045 1.22715 0.96378 0.98351 0.93539 1.22149 0.96615 0.96387 0.98963 1.22394 1.00195 0.93803 0.99268 1.21455 0.91906 0.95084 0.90765 1.17740 1.07489 0.90098 1.01946 1.20912 0.95441 0.92341 0.95171 1.21153 1.04837 0.96473 1.03687 1.19548 0.91318 0.85072 0.92944 1.83935 1.63755 1.16829 1.41960 1.21526 1.28146 0.96307 1.00715 0.88452 1.25388 0.95827 0.96195 0.99088 1.70042 1.28795 1.15176 1.34648 0.85584 0.78761 0.79326 0.79469 1.18800 1.19942 1.19940 1.20089 1.06802 0.93272 1.01384 1.20629 0.95033 0.94273 0.96572 1.73224 1.09860 1.05153 1.21387 1.72806 1.17758 0.97667 1.19341 0.91404 0.92285 0.92925 0.89988 0.90465 0.83880 0.83440 0.85919 0.84982 0.91702 0.85920 0.86599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.77 37.16 0.36 -0.90 16 2 C -0.06 -0.55 6.35 -27.88 -0.18 -0.73 16 3 C 0.04 0.44 6.26 -82.36 -0.52 -0.07 16 4 C -0.11 -1.25 9.81 -39.25 -0.38 -1.64 16 5 C -0.13 -1.66 9.55 -38.87 -0.37 -2.03 16 6 C 0.15 2.47 6.81 -82.77 -0.56 1.90 16 7 C -0.17 -3.07 5.88 -104.86 -0.62 -3.68 16 8 C -0.02 -0.38 9.57 -39.28 -0.38 -0.75 16 9 C -0.24 -5.20 9.15 -39.45 -0.36 -5.56 16 10 C 0.17 3.89 6.65 -39.00 -0.26 3.63 16 11 O -0.16 -4.48 9.75 0.34 0.00 -4.47 16 12 C -0.39 -10.51 9.48 30.89 0.29 -10.22 16 13 H 0.10 2.42 5.19 -52.49 -0.27 2.15 16 14 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 15 N -0.85 -24.06 13.67 55.48 0.76 -23.30 16 16 Si 0.94 19.80 29.55 -169.99 -5.02 14.78 16 17 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 C -0.20 -3.91 9.98 -39.45 -0.39 -4.31 16 21 C -0.05 -0.78 9.42 -39.28 -0.37 -1.15 16 22 N -0.25 -4.51 10.62 33.36 0.35 -4.16 16 23 N -0.23 -3.75 11.05 33.62 0.37 -3.38 16 24 H 0.07 0.69 7.96 -51.93 -0.41 0.28 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.49 7.92 -51.92 -0.41 0.08 16 29 H 0.14 1.04 8.00 -52.48 -0.42 0.62 16 30 H 0.15 1.52 6.29 -52.49 -0.33 1.19 16 31 H 0.12 2.25 7.55 -52.49 -0.40 1.86 16 32 H 0.13 2.81 5.62 -52.49 -0.30 2.52 16 33 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 35 H 0.12 1.54 6.24 -52.49 -0.33 1.21 16 LS Contribution 305.70 15.07 4.61 4.61 Total: -1.00 -30.64 305.70 -6.45 -37.09 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -3.69 Total: 3.34 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -3.83 Total: -24.51 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 1.48 Total: -30.83 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: 0.00 Total: -4.47 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.64 -6.45 -37.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590930.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.577 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds