Wall clock time and date at job start Mon Mar 30 2020 01:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47083 * 2 1 4 4 C 1.38750 * 119.96054 * 124.97615 * 3 2 1 5 5 C 1.38623 * 118.07063 * 179.72571 * 4 3 2 6 6 C 1.39774 * 117.88323 * 0.52817 * 5 4 3 7 7 C 1.48255 * 120.18328 * 179.75987 * 6 5 4 8 8 C 1.39475 * 120.04943 * 179.72145 * 7 6 5 9 9 C 1.37813 * 119.94121 * 179.97438 * 8 7 6 10 10 C 1.39024 * 120.05623 * 0.25191 * 9 8 7 11 11 O 1.35678 * 119.94369 * 179.72333 * 10 9 8 12 12 C 1.34807 * 117.00213 * 354.45439 * 11 10 9 13 13 H 1.07995 * 120.00231 * 5.05535 * 12 11 10 14 14 C 1.38668 * 119.99845 * 185.05733 * 12 11 10 15 15 N 1.31550 * 120.00039 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99842 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47365 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47413 * 119.99945 * 16 14 12 19 19 H 1.48496 * 109.47219 * 239.99888 * 16 14 12 20 20 C 1.39018 * 120.10367 * 359.49626 * 10 9 8 21 21 C 1.37812 * 120.05637 * 0.50375 * 20 10 9 22 22 N 1.32768 * 119.62543 * 359.48841 * 6 5 4 23 23 N 1.28350 * 122.02965 * 0.24463 * 22 6 5 24 24 H 1.08999 * 109.47122 * 60.00367 * 1 2 3 25 25 H 1.09002 * 109.47430 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47584 * 300.00138 * 1 2 3 27 27 H 1.08996 * 109.46922 * 239.99574 * 2 1 3 28 28 H 1.09007 * 109.46842 * 120.00181 * 2 1 3 29 29 H 1.08005 * 120.96645 * 359.97438 * 4 3 2 30 30 H 1.07995 * 121.06016 * 180.26043 * 5 4 3 31 31 H 1.07989 * 120.02876 * 359.96157 * 8 7 6 32 32 H 1.08000 * 119.97465 * 179.97438 * 9 8 7 33 33 H 0.96998 * 119.99653 * 180.02562 * 15 14 12 34 34 H 1.08002 * 119.96959 * 180.23283 * 20 10 9 35 35 H 1.07995 * 120.02828 * 179.77306 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9129 1.8444 0.9850 5 6 3.3546 3.1578 0.9442 6 6 2.8753 3.9770 -0.0819 7 6 3.3100 5.3916 -0.1709 8 6 2.8345 6.2050 -1.1993 9 6 3.2396 7.5198 -1.2796 10 6 4.1255 8.0340 -0.3397 11 8 4.5273 9.3272 -0.4242 12 6 4.1226 10.0245 -1.5046 13 1 3.4407 9.5765 -2.2122 14 6 4.5819 11.3171 -1.7075 15 7 5.4129 11.8627 -0.8460 16 14 4.0206 12.2835 -3.2043 17 1 3.0940 11.4507 -4.0124 18 1 3.3214 13.5171 -2.7634 19 1 5.2007 12.6509 -4.0274 20 6 4.5967 7.2267 0.6893 21 6 4.1946 5.9113 0.7738 22 7 2.0328 3.4797 -0.9795 23 7 1.6338 2.2605 -0.9364 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.2478 1.1694 1.7587 30 1 4.0436 3.5372 1.6842 31 1 2.1496 5.8048 -1.9321 32 1 2.8721 8.1500 -2.0759 33 1 5.7339 12.7669 -0.9878 34 1 5.2820 7.6295 1.4204 35 1 4.5638 5.2835 1.5712 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243590930.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:38 Heat of formation + Delta-G solvation = 23.647134 kcal Electronic energy + Delta-G solvation = -18837.282801 eV Core-core repulsion = 15800.342974 eV Total energy + Delta-G solvation = -3036.939827 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.00336 -40.75429 -38.41113 -35.77423 -34.51586 -34.09155 -32.26214 -31.82521 -29.65528 -27.48513 -26.15527 -25.36001 -23.64725 -22.73731 -22.36824 -19.91346 -19.06954 -18.33218 -17.71731 -16.76665 -16.36319 -16.15415 -16.07236 -15.60197 -15.36055 -14.97650 -14.93876 -14.59974 -14.29112 -14.09911 -13.59809 -13.43652 -13.14995 -12.97623 -12.67651 -12.55633 -12.42772 -12.11958 -12.06558 -11.64917 -11.28526 -11.21067 -10.98322 -10.59747 -10.48218 -9.91150 -8.85735 -8.53287 -6.19812 -0.40979 -0.06063 0.53988 0.85347 1.35203 1.42755 1.52973 2.14527 2.51814 2.88590 2.96344 3.16659 3.37630 3.48639 3.63818 3.76803 4.05477 4.07451 4.13737 4.18716 4.37027 4.42197 4.51094 4.66082 4.68122 4.87400 4.89578 5.01460 5.05752 5.10725 5.20869 5.25090 5.31097 5.43832 5.52575 5.62312 5.67846 5.96333 6.03744 6.91449 7.66890 7.82205 8.68969 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.044987 B = 0.003309 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.249627 B = 8458.822793 C = 9006.963570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.063 4.063 3 C 0.043 3.957 4 C -0.099 4.099 5 C -0.120 4.120 6 C 0.118 3.882 7 C -0.147 4.147 8 C -0.032 4.032 9 C -0.248 4.248 10 C 0.134 3.866 11 O -0.217 6.217 12 C -0.417 4.417 13 H 0.102 0.898 14 C -0.017 4.017 15 N -0.913 5.913 16 Si 1.017 2.983 17 H -0.254 1.254 18 H -0.266 1.266 19 H -0.267 1.267 20 C -0.200 4.200 21 C -0.031 4.031 22 N -0.287 5.287 23 N -0.271 5.271 24 H 0.042 0.958 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.196 0.804 30 H 0.182 0.818 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.275 0.725 34 H 0.132 0.868 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.638 -21.708 4.983 22.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 C -0.103 4.103 4 C -0.127 4.127 5 C -0.148 4.148 6 C -0.025 4.025 7 C -0.150 4.150 8 C -0.051 4.051 9 C -0.267 4.267 10 C 0.081 3.919 11 O -0.122 6.122 12 C -0.492 4.492 13 H 0.120 0.880 14 C -0.215 4.215 15 N -0.550 5.550 16 Si 0.837 3.163 17 H -0.177 1.177 18 H -0.191 1.191 19 H -0.192 1.192 20 C -0.219 4.219 21 C -0.050 4.050 22 N -0.128 5.128 23 N -0.112 5.112 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.107 0.893 28 H 0.133 0.867 29 H 0.213 0.787 30 H 0.199 0.801 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.085 0.915 34 H 0.150 0.850 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.332 -21.126 3.780 22.113 hybrid contribution 0.638 0.906 0.353 1.163 sum -4.693 -20.219 4.133 21.164 Atomic orbital electron populations 1.21690 0.94281 1.02860 1.01480 1.20560 0.96781 0.87573 1.05245 1.23505 0.95097 0.99380 0.92349 1.22733 0.94729 0.96234 0.99035 1.22778 0.99738 0.94113 0.98220 1.21402 0.93627 0.94594 0.92858 1.18119 1.05405 0.91098 1.00374 1.21030 0.96040 0.91706 0.96351 1.21178 1.04866 0.97327 1.03371 1.20094 0.92348 0.84808 0.94613 1.83917 1.66517 1.18691 1.43076 1.21898 1.28885 0.97085 1.01360 0.88029 1.26568 0.95812 0.96937 1.02231 1.70162 1.31568 1.15888 1.37337 0.84544 0.78569 0.77709 0.75523 1.17723 1.19130 1.19169 1.20424 1.06703 0.94193 1.00554 1.21071 0.93532 0.93305 0.97106 1.73114 1.10639 1.06510 1.22583 1.72772 1.19328 0.97568 1.21558 0.93841 0.89884 0.93286 0.89298 0.86653 0.78696 0.80106 0.85425 0.85990 0.91545 0.84992 0.81404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.77 71.98 0.70 -1.34 16 2 C -0.06 -0.80 6.35 29.85 0.19 -0.61 16 3 C 0.04 0.89 6.26 42.67 0.27 1.16 16 4 C -0.10 -1.60 9.81 22.48 0.22 -1.38 16 5 C -0.12 -2.48 9.55 22.73 0.22 -2.26 16 6 C 0.12 3.59 6.81 42.04 0.29 3.88 16 7 C -0.15 -5.07 5.88 -20.02 -0.12 -5.19 16 8 C -0.03 -1.27 9.57 22.47 0.22 -1.05 16 9 C -0.25 -11.17 9.15 22.36 0.20 -10.97 16 10 C 0.13 6.51 6.65 22.65 0.15 6.66 16 11 O -0.22 -12.71 9.75 -21.72 -0.21 -12.92 16 12 C -0.42 -23.91 9.48 67.92 0.64 -23.27 16 13 H 0.10 5.44 5.19 -2.91 -0.02 5.42 16 14 C -0.02 -0.93 5.49 84.84 0.47 -0.47 16 15 N -0.91 -54.67 13.67 21.62 0.30 -54.37 16 16 Si 1.02 42.42 29.55 68.60 2.03 44.45 16 17 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 18 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 20 C -0.20 -7.92 9.98 22.36 0.22 -7.70 16 21 C -0.03 -0.98 9.42 22.46 0.21 -0.77 16 22 N -0.29 -9.84 10.62 -48.38 -0.51 -10.36 16 23 N -0.27 -8.18 11.05 -47.54 -0.53 -8.71 16 24 H 0.04 0.82 7.96 -2.39 -0.02 0.80 16 25 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.12 0.66 7.92 -2.38 -0.02 0.64 16 29 H 0.20 1.16 8.00 -2.91 -0.02 1.13 16 30 H 0.18 2.43 6.29 -2.91 -0.02 2.41 16 31 H 0.13 4.82 7.55 -2.92 -0.02 4.80 16 32 H 0.12 5.60 5.62 -2.91 -0.02 5.59 16 33 H 0.28 15.03 8.31 -92.71 -0.77 14.25 16 34 H 0.13 4.93 8.06 -2.91 -0.02 4.90 16 35 H 0.17 3.49 6.24 -2.91 -0.02 3.47 16 Total: -1.00 -74.44 305.70 6.07 -68.37 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 1.12 Total: 16.86 kcal Atomic # 6 Polarization: -47.20 SS G_CDS: 3.88 Total: -43.32 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -0.74 Total: -73.44 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.21 Total: -12.92 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -74.44 6.07 -68.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590930.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.015 kcal (2) G-P(sol) polarization free energy of solvation -74.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds