Wall clock time and date at job start Mon Mar 30 2020 01:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35315 * 126.03829 * 2 1 4 4 N 1.34955 * 107.74306 * 179.87324 * 3 2 1 5 5 C 1.46493 * 126.03606 * 180.14569 * 4 3 2 6 6 N 1.40079 * 107.92480 * 0.39416 * 4 3 2 7 7 C 1.30843 * 108.20761 * 359.75375 * 6 4 3 8 8 C 1.50700 * 125.89741 * 180.02562 * 7 6 4 9 9 S 1.81402 * 109.47010 * 269.97257 * 8 7 6 10 10 O 1.42097 * 109.47483 * 296.39249 * 9 8 7 11 11 C 1.81401 * 103.00044 * 180.02562 * 9 8 7 12 12 C 1.52999 * 109.47127 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47076 * 180.02562 * 12 11 9 14 14 C 1.50697 * 109.47182 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00286 * 359.97438 * 14 13 12 16 16 C 1.37886 * 119.99953 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99978 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99976 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47169 * 59.99598 * 18 16 14 20 20 H 1.48498 * 109.47506 * 179.97438 * 18 16 14 21 21 H 1.48510 * 109.47008 * 300.00342 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.68779 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.68879 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.68860 * 1 2 3 25 25 H 1.07998 * 126.12681 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.47340 * 270.26498 * 5 4 3 27 27 H 1.08998 * 109.47431 * 30.26477 * 5 4 3 28 28 H 1.09000 * 109.47150 * 150.26070 * 5 4 3 29 29 H 1.09000 * 109.47248 * 29.97653 * 8 7 6 30 30 H 1.09002 * 109.46815 * 149.97831 * 8 7 6 31 31 H 1.09005 * 109.47005 * 300.00160 * 11 9 8 32 32 H 1.08997 * 109.47060 * 60.00261 * 11 9 8 33 33 H 1.09005 * 109.46923 * 299.99737 * 12 11 9 34 34 H 1.08997 * 109.47324 * 59.99950 * 12 11 9 35 35 H 1.09008 * 109.47425 * 300.00014 * 13 12 11 36 36 H 1.09005 * 109.47244 * 59.99326 * 13 12 11 37 37 H 0.96992 * 119.99441 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0942 0.0000 4 7 3.5845 0.6705 0.0028 5 6 4.7746 1.5247 0.0069 6 7 3.5754 -0.7302 -0.0045 7 6 2.3299 -1.1310 -0.0062 8 6 1.8627 -2.5638 -0.0130 9 16 1.6741 -3.1301 -1.7260 10 8 0.6579 -2.3712 -2.3667 11 6 1.1148 -4.8445 -1.5298 12 6 0.9069 -5.4741 -2.9086 13 6 0.4345 -6.9199 -2.7431 14 6 0.2292 -7.5399 -4.1012 15 1 0.4164 -6.9606 -4.9932 16 6 -0.1978 -8.8468 -4.2050 17 7 -0.4254 -9.5525 -3.1188 18 14 -0.4517 -9.6156 -5.8884 19 1 0.8290 -9.5957 -6.6399 20 1 -0.9091 -11.0192 -5.7279 21 1 -1.4761 -8.8429 -6.6360 22 1 -0.3633 -0.0056 1.0277 23 1 -0.3633 -0.8872 -0.5187 24 1 -0.3633 0.8928 -0.5090 25 1 1.9724 2.1223 0.0004 26 1 5.0697 1.7416 -1.0198 27 1 4.5509 2.4571 0.5253 28 1 5.5887 1.0111 0.5182 29 1 2.5965 -3.1876 0.4973 30 1 0.9042 -2.6358 0.5010 31 1 1.8670 -5.4116 -0.9814 32 1 0.1749 -4.8591 -0.9779 33 1 0.1548 -4.9071 -3.4573 34 1 1.8469 -5.4595 -3.4602 35 1 1.1862 -7.4872 -2.1942 36 1 -0.5056 -6.9341 -2.1916 37 1 -0.7253 -10.4720 -3.1919 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335617411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:50 Heat of formation + Delta-G solvation = -5.274023 kcal Electronic energy + Delta-G solvation = -17757.208968 eV Core-core repulsion = 14854.458976 eV Total energy + Delta-G solvation = -2902.749991 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.20873 -36.78067 -36.29002 -35.18284 -34.00915 -32.77260 -30.73107 -29.39915 -28.21584 -25.68201 -25.16902 -22.19080 -21.70964 -20.59399 -18.67450 -18.25222 -17.50899 -16.87303 -16.51542 -16.30538 -15.89889 -15.66256 -15.40276 -14.65984 -14.34313 -14.24538 -14.10756 -13.93467 -13.83096 -13.36726 -13.21526 -13.11034 -12.88649 -12.77777 -12.66805 -12.49247 -12.46666 -11.84987 -11.58379 -11.52780 -11.31524 -11.00300 -10.55154 -10.12269 -9.35543 -9.02406 -8.20230 -6.31718 0.34434 0.98250 1.40073 1.43513 1.51407 1.60987 1.71534 1.88819 2.41421 2.84149 3.12485 3.50228 3.76232 4.07976 4.08875 4.21008 4.26172 4.37018 4.50399 4.53910 4.65029 4.68752 4.75931 4.80121 4.87632 4.96708 5.09346 5.17117 5.20396 5.21608 5.50595 5.62075 5.71361 5.84376 6.15417 6.24103 6.67644 6.84870 7.37444 8.91248 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.045667 B = 0.003099 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.989813 B = 9033.910239 C = 9146.616960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.265 4.265 3 C 0.063 3.937 4 N -0.376 5.376 5 C 0.093 3.907 6 N -0.309 5.309 7 C 0.078 3.922 8 C -0.367 4.367 9 S 1.294 4.706 10 O -0.895 6.895 11 C -0.438 4.438 12 C -0.088 4.088 13 C 0.028 3.972 14 C -0.549 4.549 15 H 0.060 0.940 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.261 1.261 20 H -0.281 1.281 21 H -0.272 1.272 22 H 0.069 0.931 23 H 0.039 0.961 24 H 0.073 0.927 25 H 0.212 0.788 26 H 0.087 0.913 27 H 0.117 0.883 28 H 0.093 0.907 29 H 0.159 0.841 30 H 0.101 0.899 31 H 0.143 0.857 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.082 0.918 35 H 0.008 0.992 36 H -0.018 1.018 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.868 23.422 8.932 27.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.277 4.277 3 C -0.084 4.084 4 N -0.158 5.158 5 C -0.047 4.047 6 N -0.135 5.135 7 C -0.088 4.088 8 C -0.504 4.504 9 S 1.494 4.506 10 O -0.890 6.890 11 C -0.576 4.576 12 C -0.126 4.126 13 C -0.010 4.010 14 C -0.587 4.587 15 H 0.078 0.922 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.789 3.211 19 H -0.186 1.186 20 H -0.207 1.207 21 H -0.197 1.197 22 H 0.087 0.913 23 H 0.058 0.942 24 H 0.092 0.908 25 H 0.229 0.771 26 H 0.105 0.895 27 H 0.135 0.865 28 H 0.112 0.888 29 H 0.177 0.823 30 H 0.120 0.880 31 H 0.161 0.839 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.101 0.899 35 H 0.026 0.974 36 H 0.000 1.000 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.336 23.548 8.168 28.268 hybrid contribution -3.314 -0.695 0.553 3.431 sum 10.022 22.853 8.722 26.434 Atomic orbital electron populations 1.20057 0.89466 1.02167 1.01535 1.20352 0.97763 0.92398 1.17225 1.22818 0.83663 1.00955 1.00944 1.48753 1.07023 1.04088 1.55934 1.22261 0.84199 0.93382 1.04834 1.77193 1.19634 0.90532 1.26096 1.21335 0.91082 0.94804 1.01543 1.26060 1.07431 0.96144 1.20810 1.70323 1.11933 0.83063 0.85297 1.92987 1.63828 1.66481 1.65708 1.27698 1.08705 1.17864 1.03308 1.21108 1.01159 0.96413 0.93967 1.19017 0.94600 0.91868 0.95563 1.21736 1.45227 0.97818 0.93964 0.92171 1.25995 0.94968 0.97915 1.00960 1.70085 1.47184 1.09943 1.30139 0.85504 0.79147 0.77178 0.79262 1.18583 1.20658 1.19676 0.91274 0.94184 0.90786 0.77148 0.89466 0.86453 0.88788 0.82296 0.88024 0.83899 0.91354 0.94850 0.89924 0.97381 0.99989 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.78 10.04 71.24 0.71 -1.07 16 2 C -0.27 -6.58 6.10 -20.14 -0.12 -6.70 16 3 C 0.06 1.14 11.40 83.54 0.95 2.10 16 4 N -0.38 -7.00 4.01 -369.58 -1.48 -8.48 16 5 C 0.09 0.73 11.47 127.77 1.47 2.20 16 6 N -0.31 -7.69 12.58 -47.38 -0.60 -8.29 16 7 C 0.08 2.04 6.48 43.10 0.28 2.32 16 8 C -0.37 -8.64 6.16 71.24 0.44 -8.20 16 9 S 1.29 36.00 13.14 -56.49 -0.74 35.26 16 10 O -0.89 -35.68 17.56 -148.98 -2.62 -38.30 16 11 C -0.44 -14.26 5.92 71.98 0.43 -13.83 16 12 C -0.09 -3.73 5.16 30.59 0.16 -3.57 16 13 C 0.03 1.51 4.97 29.85 0.15 1.65 16 14 C -0.55 -32.26 9.11 25.60 0.23 -32.03 16 15 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 16 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 17 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 18 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 19 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 22 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.04 1.19 7.33 -2.39 -0.02 1.17 16 24 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.21 1.93 8.06 -2.91 -0.02 1.91 16 26 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.16 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.10 2.44 7.92 -2.39 -0.02 2.42 16 31 H 0.14 3.75 8.14 -2.39 -0.02 3.73 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.08 3.09 8.14 -2.39 -0.02 3.08 16 35 H 0.01 0.43 8.14 -2.38 -0.02 0.42 16 36 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 37 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -84.13 330.76 3.07 -81.06 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 1.03 Total: 5.80 kcal Atomic # 6 Polarization: -61.87 SS G_CDS: 5.16 Total: -56.71 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -1.79 Total: -74.27 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -2.62 Total: -38.30 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: 36.00 SS G_CDS: -0.74 Total: 35.26 kcal Total: -84.13 3.07 -81.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335617411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.790 kcal (2) G-P(sol) polarization free energy of solvation -84.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds