Wall clock time and date at job start Mon Mar 30 2020 00:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99685 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99866 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99859 * 3 2 1 7 7 C 1.38797 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00246 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00077 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46640 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00233 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99340 * 180.02562 * 11 10 9 14 14 N 1.36601 * 119.99858 * 179.97438 * 13 11 10 15 15 C 1.49815 * 111.00043 * 239.59264 * 14 13 11 16 16 C 1.50546 * 104.61647 * 245.34195 * 15 14 13 17 17 H 1.08994 * 110.12418 * 80.34036 * 16 15 14 18 18 C 1.51065 * 125.15125 * 215.32326 * 16 15 14 19 19 C 1.56375 * 101.58104 * 155.66459 * 18 16 15 20 20 C 1.56116 * 105.82376 * 334.79842 * 19 18 16 21 21 C 1.50455 * 104.08198 * 352.55482 * 20 19 18 22 22 H 1.09007 * 110.19323 * 279.08496 * 21 20 19 23 23 C 1.50190 * 111.00365 * 119.99602 * 14 13 11 24 24 H 0.96998 * 119.99330 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46901 * 299.99874 * 10 9 7 26 26 H 1.08995 * 109.46756 * 60.00354 * 10 9 7 27 27 H 0.96995 * 120.00137 * 359.97438 * 13 11 10 28 28 H 1.08998 * 110.40772 * 4.12659 * 15 14 13 29 29 H 1.08998 * 110.41016 * 126.55610 * 15 14 13 30 30 H 1.09000 * 111.00234 * 273.73505 * 18 16 15 31 31 H 1.09001 * 111.00684 * 37.54897 * 18 16 15 32 32 H 1.09001 * 110.18679 * 94.00102 * 19 18 16 33 33 H 1.09006 * 110.18126 * 215.75979 * 19 18 16 34 34 H 1.08994 * 110.58212 * 233.89571 * 20 19 18 35 35 H 1.08997 * 110.49968 * 111.17185 * 20 19 18 36 36 H 1.08999 * 110.93595 * 265.88894 * 23 14 13 37 37 H 1.09007 * 110.92850 * 29.52126 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 1.4001 5 1 1.4478 2.6527 -0.7001 6 1 3.5479 1.4402 -0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 7 2.3653 -7.6224 -0.0008 15 6 2.8396 -8.3733 1.2057 16 6 3.7273 -9.4569 0.6541 17 1 4.7144 -9.0540 0.4279 18 6 3.8515 -10.8518 1.2204 19 6 4.3335 -11.6568 -0.0305 20 6 3.8282 -10.8567 -1.2722 21 6 2.9523 -9.7837 -0.6846 22 1 1.9644 -10.1857 -0.4597 23 6 2.8334 -8.3724 -1.2149 24 1 -0.4849 -0.8401 0.0004 25 1 3.1246 -3.7313 -0.8905 26 1 3.1245 -3.7313 0.8895 27 1 3.8010 -6.1834 -0.0004 28 1 3.4070 -7.7155 1.8640 29 1 1.9945 -8.8089 1.7388 30 1 4.5950 -10.8853 2.0168 31 1 2.8872 -11.2175 1.5734 32 1 5.4216 -11.7212 -0.0400 33 1 3.8980 -12.6560 -0.0254 34 1 3.2498 -11.5013 -1.9340 35 1 4.6675 -10.4131 -1.8078 36 1 2.0953 -8.3178 -2.0150 37 1 3.8004 -8.0003 -1.5536 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001457413309.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:41 Heat of formation + Delta-G solvation = -1.570376 kcal Electronic energy + Delta-G solvation = -18205.563958 eV Core-core repulsion = 15302.974569 eV Total energy + Delta-G solvation = -2902.589389 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.87564 -38.83887 -36.10146 -32.56691 -32.50932 -30.68163 -29.66427 -26.80345 -26.54685 -24.80949 -22.31781 -20.93671 -20.20475 -20.05057 -18.39000 -17.26847 -16.72405 -16.27738 -15.10534 -14.89696 -14.77982 -14.68159 -14.12432 -13.84673 -13.42929 -13.32342 -12.75033 -12.52936 -12.36450 -11.96735 -11.92944 -11.79574 -11.60781 -11.48277 -11.08141 -10.90503 -10.80940 -10.36493 -10.18698 -9.58245 -9.44420 -9.08710 -8.99528 -8.91084 -8.21231 -6.66275 -6.61656 -3.99473 2.60668 3.05814 3.29322 3.38497 3.40753 3.56445 3.63783 4.10927 4.25089 4.30215 4.57230 4.71587 4.80347 4.90444 5.02574 5.04257 5.12056 5.23008 5.25498 5.28704 5.41018 5.46497 5.52641 5.61042 5.62521 5.67378 5.71364 5.75409 5.81865 5.98807 6.00361 6.04210 6.32155 7.39837 7.58062 7.92772 8.50874 8.79337 9.27663 10.82442 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.057462 B = 0.003178 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.159160 B = 8807.543729 C = 8915.658218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.035 3.965 3 Si 1.087 2.913 4 H -0.284 1.284 5 H -0.280 1.280 6 H -0.287 1.287 7 C -0.608 4.608 8 H 0.066 0.934 9 S -0.111 6.111 10 C -0.127 4.127 11 C 0.545 3.455 12 O -0.491 6.491 13 N -0.593 5.593 14 N -0.275 5.275 15 C 0.034 3.966 16 C -0.137 4.137 17 H 0.074 0.926 18 C -0.103 4.103 19 C -0.122 4.122 20 C -0.104 4.104 21 C -0.118 4.118 22 H 0.088 0.912 23 C 0.037 3.963 24 H 0.278 0.722 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.377 0.623 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.071 -22.010 -0.027 25.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.176 4.176 3 Si 0.914 3.086 4 H -0.211 1.211 5 H -0.205 1.205 6 H -0.213 1.213 7 C -0.756 4.756 8 H 0.084 0.916 9 S 0.115 5.885 10 C -0.279 4.279 11 C 0.331 3.669 12 O -0.361 6.361 13 N -0.342 5.342 14 N -0.091 5.091 15 C -0.093 4.093 16 C -0.157 4.157 17 H 0.092 0.908 18 C -0.141 4.141 19 C -0.160 4.160 20 C -0.142 4.142 21 C -0.137 4.137 22 H 0.107 0.893 23 C -0.090 4.090 24 H 0.091 0.909 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.215 0.785 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.270 -20.605 -0.029 22.594 hybrid contribution 3.223 -1.466 0.005 3.540 sum 12.493 -22.070 -0.024 25.361 Atomic orbital electron populations 1.70767 1.06710 1.31041 1.43334 1.26057 0.96333 1.02138 0.93028 0.83284 0.74404 0.73939 0.77015 1.21065 1.20506 1.21317 1.23735 0.96065 0.92191 1.63637 0.91568 1.84864 1.07799 0.98621 1.97216 1.23292 1.05287 0.94068 1.05295 1.20216 0.86523 0.84831 0.75364 1.90694 1.15056 1.84965 1.45377 1.45668 1.08129 1.01281 1.79092 1.66305 1.50285 0.91302 1.01238 1.22814 0.98709 0.94832 0.92954 1.22613 0.99129 0.95911 0.98005 0.90785 1.21761 1.01735 0.93464 0.97156 1.22991 1.00682 0.98850 0.93476 1.21540 0.98857 0.96478 0.97356 1.22279 1.00282 0.94550 0.96632 0.89327 1.22986 1.00281 0.92129 0.93653 0.90907 0.88922 0.88919 0.78458 0.90958 0.88960 0.91469 0.90946 0.91621 0.91507 0.91277 0.91591 0.89097 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.66 13.67 55.49 0.76 -26.90 16 2 C 0.03 1.02 5.49 -17.43 -0.10 0.93 16 3 Si 1.09 25.04 29.92 -169.99 -5.09 19.95 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.61 -17.58 9.50 30.94 0.29 -17.28 16 8 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 9 S -0.11 -3.01 19.60 -107.50 -2.11 -5.12 16 10 C -0.13 -2.58 6.16 36.01 0.22 -2.36 16 11 C 0.54 10.58 7.95 -10.98 -0.09 10.49 16 12 O -0.49 -11.73 16.19 5.56 0.09 -11.64 16 13 N -0.59 -8.60 4.65 31.22 0.15 -8.45 16 14 N -0.27 -3.75 5.19 -111.23 -0.58 -4.33 16 15 C 0.03 0.37 6.93 -3.42 -0.02 0.34 16 16 C -0.14 -1.13 2.77 -90.02 -0.25 -1.38 16 17 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 18 C -0.10 -0.70 6.71 -25.89 -0.17 -0.87 16 19 C -0.12 -0.74 6.95 -23.25 -0.16 -0.90 16 20 C -0.10 -0.71 6.70 -26.33 -0.18 -0.88 16 21 C -0.12 -1.02 2.86 -89.98 -0.26 -1.28 16 22 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 23 C 0.04 0.40 6.78 -2.87 -0.02 0.38 16 24 H 0.28 8.90 7.12 -40.82 -0.29 8.61 16 25 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 26 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 27 H 0.38 4.26 8.83 -185.16 -1.63 2.62 16 28 H 0.07 0.76 7.90 -51.93 -0.41 0.35 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16 LS Contribution 316.74 15.07 4.77 4.77 Total: -1.00 -34.82 316.74 -9.76 -44.58 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.03 Total: -0.05 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -0.73 Total: -12.82 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.33 Total: -39.69 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.09 Total: 19.95 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -2.11 Total: -5.12 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.82 -9.76 -44.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457413309.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.014 kcal (2) G-P(sol) polarization free energy of solvation -34.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds