Wall clock time and date at job start Mon Mar 30 2020 00:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99685 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99866 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99859 * 3 2 1 7 7 C 1.38797 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00246 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00077 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46640 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00233 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99340 * 180.02562 * 11 10 9 14 14 N 1.36601 * 119.99858 * 179.97438 * 13 11 10 15 15 C 1.49815 * 111.00043 * 239.59264 * 14 13 11 16 16 C 1.50546 * 104.61647 * 245.34195 * 15 14 13 17 17 H 1.08994 * 110.12418 * 80.34036 * 16 15 14 18 18 C 1.51065 * 125.15125 * 215.32326 * 16 15 14 19 19 C 1.56375 * 101.58104 * 155.66459 * 18 16 15 20 20 C 1.56116 * 105.82376 * 334.79842 * 19 18 16 21 21 C 1.50455 * 104.08198 * 352.55482 * 20 19 18 22 22 H 1.09007 * 110.19323 * 279.08496 * 21 20 19 23 23 C 1.50190 * 111.00365 * 119.99602 * 14 13 11 24 24 H 0.96998 * 119.99330 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46901 * 299.99874 * 10 9 7 26 26 H 1.08995 * 109.46756 * 60.00354 * 10 9 7 27 27 H 0.96995 * 120.00137 * 359.97438 * 13 11 10 28 28 H 1.08998 * 110.40772 * 4.12659 * 15 14 13 29 29 H 1.08998 * 110.41016 * 126.55610 * 15 14 13 30 30 H 1.09000 * 111.00234 * 273.73505 * 18 16 15 31 31 H 1.09001 * 111.00684 * 37.54897 * 18 16 15 32 32 H 1.09001 * 110.18679 * 94.00102 * 19 18 16 33 33 H 1.09006 * 110.18126 * 215.75979 * 19 18 16 34 34 H 1.08994 * 110.58212 * 233.89571 * 20 19 18 35 35 H 1.08997 * 110.49968 * 111.17185 * 20 19 18 36 36 H 1.08999 * 110.93595 * 265.88894 * 23 14 13 37 37 H 1.09007 * 110.92850 * 29.52126 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 1.4001 5 1 1.4478 2.6527 -0.7001 6 1 3.5479 1.4402 -0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 7 2.3653 -7.6224 -0.0008 15 6 2.8396 -8.3733 1.2057 16 6 3.7273 -9.4569 0.6541 17 1 4.7144 -9.0540 0.4279 18 6 3.8515 -10.8518 1.2204 19 6 4.3335 -11.6568 -0.0305 20 6 3.8282 -10.8567 -1.2722 21 6 2.9523 -9.7837 -0.6846 22 1 1.9644 -10.1857 -0.4597 23 6 2.8334 -8.3724 -1.2149 24 1 -0.4849 -0.8401 0.0004 25 1 3.1246 -3.7313 -0.8905 26 1 3.1245 -3.7313 0.8895 27 1 3.8010 -6.1834 -0.0004 28 1 3.4070 -7.7155 1.8640 29 1 1.9945 -8.8089 1.7388 30 1 4.5950 -10.8853 2.0168 31 1 2.8872 -11.2175 1.5734 32 1 5.4216 -11.7212 -0.0400 33 1 3.8980 -12.6560 -0.0254 34 1 3.2498 -11.5013 -1.9340 35 1 4.6675 -10.4131 -1.8078 36 1 2.0953 -8.3178 -2.0150 37 1 3.8004 -8.0003 -1.5536 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001457413309.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:41 Heat of formation + Delta-G solvation = -25.091917 kcal Electronic energy + Delta-G solvation = -18206.583928 eV Core-core repulsion = 15302.974569 eV Total energy + Delta-G solvation = -2903.609360 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.77908 -40.17561 -37.18935 -34.74200 -33.69674 -31.39013 -31.09247 -27.88805 -27.24752 -26.98544 -23.21638 -22.05060 -21.12578 -20.74866 -20.45789 -18.50743 -17.99417 -17.35792 -16.64125 -16.25122 -15.75340 -15.69589 -15.55251 -15.07505 -14.87073 -14.50448 -14.40425 -13.90593 -13.62074 -13.41856 -13.18956 -12.73822 -12.53975 -12.19867 -12.07202 -11.93151 -11.74700 -11.56166 -11.32855 -11.09891 -11.05180 -11.04407 -10.37944 -10.31637 -9.89085 -8.91915 -8.86866 -6.27238 1.07335 1.51829 1.52731 1.62449 1.78567 1.83224 2.34562 2.94639 3.03190 3.08315 3.20672 3.62593 3.80714 3.94459 4.01550 4.14958 4.21292 4.24050 4.32865 4.35712 4.46886 4.58226 4.63045 4.71272 4.83519 4.88123 4.98012 5.07192 5.16456 5.20910 5.35436 5.46199 5.49082 5.65420 6.08333 6.15608 6.33369 7.07022 7.45204 8.51680 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.057462 B = 0.003178 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.159160 B = 8807.543729 C = 8915.658218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.020 4.020 3 Si 1.140 2.860 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.613 4.613 8 H 0.077 0.923 9 S -0.192 6.192 10 C -0.103 4.103 11 C 0.549 3.451 12 O -0.545 6.545 13 N -0.569 5.569 14 N -0.311 5.311 15 C 0.035 3.965 16 C -0.127 4.127 17 H 0.082 0.918 18 C -0.102 4.102 19 C -0.118 4.118 20 C -0.101 4.101 21 C -0.113 4.113 22 H 0.076 0.924 23 C 0.038 3.962 24 H 0.261 0.739 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.398 0.602 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.221 -23.001 0.017 27.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.223 4.223 3 Si 0.958 3.042 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.760 4.760 8 H 0.095 0.905 9 S 0.034 5.966 10 C -0.256 4.256 11 C 0.335 3.665 12 O -0.420 6.420 13 N -0.316 5.316 14 N -0.129 5.129 15 C -0.092 4.092 16 C -0.146 4.146 17 H 0.101 0.899 18 C -0.140 4.140 19 C -0.155 4.155 20 C -0.139 4.139 21 C -0.132 4.132 22 H 0.094 0.906 23 C -0.089 4.089 24 H 0.072 0.928 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.239 0.761 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.485 -21.656 0.017 24.998 hybrid contribution 2.279 -1.317 -0.006 2.632 sum 14.764 -22.973 0.012 27.308 Atomic orbital electron populations 1.70889 1.08056 1.30061 1.45956 1.27852 0.96316 1.06432 0.91709 0.82673 0.74008 0.69388 0.78157 1.19298 1.20526 1.18592 1.24060 0.96574 0.92672 1.62716 0.90503 1.85135 1.12908 1.01051 1.97485 1.23154 1.02311 0.92783 1.07377 1.19998 0.86124 0.85392 0.74959 1.90680 1.17296 1.85618 1.48379 1.45160 1.08391 1.01125 1.76941 1.66229 1.52304 0.90918 1.03406 1.22777 0.99047 0.95447 0.91880 1.22546 0.98688 0.96000 0.97390 0.89918 1.21791 1.02052 0.92299 0.97872 1.22976 1.01347 0.98866 0.92346 1.21559 0.98659 0.95843 0.97860 1.22217 1.00259 0.93777 0.96994 0.90602 1.22962 1.00409 0.93265 0.92235 0.92819 0.86706 0.86661 0.76098 0.90602 0.89723 0.90420 0.91244 0.90558 0.90736 0.90791 0.90908 0.90607 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.44 13.67 21.65 0.30 -58.14 16 2 C -0.02 -1.17 5.49 84.86 0.47 -0.70 16 3 Si 1.14 49.31 29.92 68.60 2.05 51.36 16 4 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 7 C -0.61 -35.30 9.50 67.95 0.65 -34.65 16 8 H 0.08 4.13 7.80 -2.91 -0.02 4.10 16 9 S -0.19 -10.66 19.60 -56.49 -1.11 -11.76 16 10 C -0.10 -4.10 6.16 71.24 0.44 -3.66 16 11 C 0.55 21.10 7.95 87.66 0.70 21.79 16 12 O -0.55 -26.70 16.19 -3.03 -0.05 -26.75 16 13 N -0.57 -15.66 4.65 -173.53 -0.81 -16.46 16 14 N -0.31 -8.23 5.19 -505.82 -2.62 -10.85 16 15 C 0.04 0.71 6.93 84.94 0.59 1.30 16 16 C -0.13 -1.80 2.77 -10.40 -0.03 -1.83 16 17 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 18 C -0.10 -1.11 6.71 31.14 0.21 -0.90 16 19 C -0.12 -1.06 6.95 32.85 0.23 -0.83 16 20 C -0.10 -1.11 6.70 30.85 0.21 -0.90 16 21 C -0.11 -1.76 2.86 -10.38 -0.03 -1.79 16 22 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 23 C 0.04 0.77 6.78 85.08 0.58 1.35 16 24 H 0.26 17.36 7.12 -92.71 -0.66 16.70 16 25 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 26 H 0.12 4.06 8.14 -2.40 -0.02 4.04 16 27 H 0.40 7.89 8.83 -215.50 -1.90 5.99 16 28 H 0.08 1.47 7.90 -2.39 -0.02 1.45 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.29 8.07 -2.38 -0.02 1.27 16 Total: -1.00 -77.68 316.74 1.02 -76.66 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -0.74 Total: 16.78 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 4.00 Total: -20.83 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -3.13 Total: -85.46 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.05 Total: -26.75 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 2.05 Total: 51.36 kcal Atomic # 16 Polarization: -10.66 SS G_CDS: -1.11 Total: -11.76 kcal Total: -77.68 1.02 -76.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457413309.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.567 kcal (2) G-P(sol) polarization free energy of solvation -77.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds