Wall clock time and date at job start Mon Mar 30 2020 00:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 O 1.42906 * 109.46885 * 64.99923 * 12 10 9 14 14 C 1.53003 * 109.46807 * 205.00000 * 10 9 7 15 15 N 1.46501 * 109.47349 * 55.00436 * 14 10 9 16 16 C 1.34775 * 119.99874 * 180.02562 * 15 14 10 17 17 O 1.21278 * 120.00286 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99538 * 179.97438 * 16 15 14 19 19 N 1.46505 * 109.46805 * 179.97438 * 18 16 15 20 20 C 1.34594 * 126.43866 * 125.00249 * 19 18 16 21 21 N 1.31075 * 106.67928 * 179.97438 * 20 19 18 22 22 N 1.28836 * 107.98926 * 359.97438 * 21 20 19 23 23 N 1.28737 * 109.40069 * 359.73266 * 22 21 20 24 24 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 26 26 H 1.08998 * 109.47306 * 185.00014 * 12 10 9 27 27 H 1.08990 * 109.47060 * 305.00051 * 12 10 9 28 28 H 0.96701 * 113.99874 * 179.97438 * 13 12 10 29 29 H 1.09009 * 109.46837 * 174.99910 * 14 10 9 30 30 H 1.09000 * 109.47433 * 294.99642 * 14 10 9 31 31 H 0.97000 * 120.00018 * 359.97438 * 15 14 10 32 32 H 1.09000 * 109.47726 * 299.99386 * 18 16 15 33 33 H 1.08998 * 109.47231 * 60.00064 * 18 16 15 34 34 H 1.08003 * 126.66519 * 0.03394 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5475 -0.6024 12 6 2.4219 -4.0431 1.4215 13 8 1.2276 -4.2999 2.1631 14 6 1.1806 -4.7488 -0.6288 15 7 0.7341 -4.3252 -1.9582 16 6 -0.0558 -5.1331 -2.6929 17 8 -0.3966 -6.2110 -2.2537 18 6 -0.5156 -4.6970 -4.0602 19 7 -1.3556 -5.7428 -4.6495 20 6 -2.6078 -5.5922 -5.1194 21 7 -2.9900 -6.7678 -5.5553 22 7 -2.0227 -7.5970 -5.3636 23 7 -1.0314 -6.9797 -4.8218 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3880 -0.0068 26 1 3.0424 -4.9392 1.4103 27 1 2.9715 -3.2265 1.8893 28 1 1.3828 -4.5515 3.0838 29 1 1.7556 -5.6709 -0.7154 30 1 0.3131 -4.9201 0.0085 31 1 1.0063 -3.4630 -2.3094 32 1 -1.0904 -3.7750 -3.9734 33 1 0.3517 -4.5259 -4.6978 34 1 -3.1853 -4.6797 -5.1353 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571423791.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:43 Heat of formation + Delta-G solvation = 54.859025 kcal Electronic energy + Delta-G solvation = -20423.984462 eV Core-core repulsion = 17009.841572 eV Total energy + Delta-G solvation = -3414.142890 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.123 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.17711 -39.73110 -37.31814 -35.53016 -35.00065 -33.71615 -32.46271 -31.61455 -29.59308 -28.21626 -25.37353 -23.85716 -23.80950 -23.19197 -20.57446 -20.18946 -18.09382 -17.80624 -17.46414 -16.72878 -16.41972 -16.11587 -15.63772 -15.49208 -14.72276 -14.17480 -13.95496 -13.53955 -13.47226 -13.11658 -12.99460 -12.65183 -12.17029 -12.06672 -11.56499 -11.20856 -11.16011 -11.00428 -10.94610 -10.73084 -10.42669 -10.25304 -9.94420 -9.85849 -9.47478 -9.11142 -8.88721 -7.18734 -5.95203 -3.26164 1.20976 1.77632 2.25692 2.48543 3.13207 3.29743 3.35685 3.36992 4.10687 4.17681 4.40443 4.55590 4.61651 4.77993 4.82060 5.25984 5.35933 5.36698 5.42656 5.63523 5.75580 5.88206 5.91389 5.98799 6.17884 6.37744 6.57036 6.61839 7.49668 7.55016 8.09704 8.17910 8.21922 8.59320 9.34396 9.87854 10.24564 11.26117 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.004420 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.965184 B = 6333.608664 C = 7314.241508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.005 4.005 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.252 4.252 8 H 0.070 0.930 9 N -0.714 5.714 10 C 0.166 3.834 11 H 0.068 0.932 12 C 0.059 3.941 13 O -0.561 6.561 14 C 0.120 3.880 15 N -0.702 5.702 16 C 0.498 3.502 17 O -0.524 6.524 18 C 0.093 3.907 19 N -0.296 5.296 20 C 0.160 3.840 21 N -0.311 5.311 22 N -0.084 5.084 23 N -0.063 5.063 24 H 0.257 0.743 25 H 0.388 0.612 26 H 0.028 0.972 27 H 0.050 0.950 28 H 0.365 0.635 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.412 0.588 32 H 0.147 0.853 33 H 0.135 0.865 34 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.587 -5.265 -5.938 8.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.382 4.382 8 H 0.088 0.912 9 N -0.355 5.355 10 C 0.055 3.945 11 H 0.085 0.915 12 C -0.023 4.023 13 O -0.365 6.365 14 C -0.004 4.004 15 N -0.355 5.355 16 C 0.280 3.720 17 O -0.400 6.400 18 C -0.032 4.032 19 N -0.098 5.098 20 C -0.138 4.138 21 N -0.158 5.158 22 N -0.079 5.079 23 N -0.050 5.050 24 H 0.067 0.933 25 H 0.223 0.777 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.210 0.790 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.249 0.751 32 H 0.164 0.836 33 H 0.153 0.847 34 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.339 -7.107 -6.473 9.706 hybrid contribution 0.634 2.500 0.896 2.730 sum 1.973 -4.607 -5.577 7.498 Atomic orbital electron populations 1.69658 1.05121 1.25992 1.56589 1.24738 0.95449 0.97672 1.02369 0.86296 0.78570 0.83518 0.77887 1.21188 1.21663 1.21274 1.19174 0.90939 0.83998 1.44136 0.91181 1.42377 1.06006 0.99036 1.88124 1.20604 0.95009 0.86888 0.92048 0.91468 1.23024 0.86562 0.97381 0.95297 1.86555 1.32146 1.91689 1.26075 1.21629 0.99776 0.97139 0.81885 1.45842 1.49921 1.21438 1.18282 1.20018 0.80225 0.85543 0.86185 1.90822 1.56012 1.21720 1.71476 1.22077 0.97509 0.88549 0.95086 1.48157 1.12840 1.08734 1.40026 1.27750 0.85683 1.01631 0.98774 1.74963 1.22397 0.98375 1.20091 1.78635 0.94258 1.22140 1.12834 1.78990 1.22415 0.89515 1.14090 0.93294 0.77721 0.95434 0.93204 0.78991 0.91706 0.90321 0.75077 0.83568 0.84721 0.74831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.43 13.06 55.49 0.72 -24.70 16 2 C -0.01 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.91 20.37 29.55 -169.99 -5.02 15.34 16 4 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.25 -6.11 9.93 -15.06 -0.15 -6.26 16 8 H 0.07 1.64 7.83 -52.49 -0.41 1.23 16 9 N -0.71 -15.40 4.51 -53.42 -0.24 -15.64 16 10 C 0.17 2.82 2.84 -67.93 -0.19 2.62 16 11 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 12 C 0.06 0.94 6.86 37.16 0.25 1.19 16 13 O -0.56 -9.40 12.64 -35.23 -0.45 -9.84 16 14 C 0.12 1.88 5.12 -4.04 -0.02 1.86 16 15 N -0.70 -9.66 5.39 -60.29 -0.32 -9.99 16 16 C 0.50 6.85 7.85 -10.99 -0.09 6.76 16 17 O -0.52 -9.65 15.71 5.56 0.09 -9.56 16 18 C 0.09 0.83 6.96 -5.19 -0.04 0.80 16 19 N -0.30 -3.55 3.19 -63.73 -0.20 -3.76 16 20 C 0.16 1.69 12.79 -90.39 -1.16 0.53 16 21 N -0.31 -4.50 12.36 29.59 0.37 -4.13 16 22 N -0.08 -1.41 13.43 60.35 0.81 -0.60 16 23 N -0.06 -1.00 12.31 60.35 0.74 -0.26 16 24 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.39 9.34 7.80 -40.82 -0.32 9.02 16 26 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.37 4.37 9.12 45.56 0.42 4.79 16 29 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.08 1.44 7.39 -51.93 -0.38 1.06 16 31 H 0.41 5.33 8.14 -40.82 -0.33 5.00 16 32 H 0.15 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.24 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 306.68 15.07 4.62 4.62 Total: -1.00 -35.23 306.68 -3.49 -38.71 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -3.12 Total: 12.52 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -1.48 Total: 7.28 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: 1.87 Total: -59.08 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.36 Total: -19.41 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.23 -3.49 -38.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571423791.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.574 kcal (2) G-P(sol) polarization free energy of solvation -35.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds