Wall clock time and date at job start Mon Mar 30 2020 00:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 O 1.42906 * 109.46885 * 64.99923 * 12 10 9 14 14 C 1.53003 * 109.46807 * 205.00000 * 10 9 7 15 15 N 1.46501 * 109.47349 * 55.00436 * 14 10 9 16 16 C 1.34775 * 119.99874 * 180.02562 * 15 14 10 17 17 O 1.21278 * 120.00286 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99538 * 179.97438 * 16 15 14 19 19 N 1.46505 * 109.46805 * 179.97438 * 18 16 15 20 20 C 1.34594 * 126.43866 * 125.00249 * 19 18 16 21 21 N 1.31075 * 106.67928 * 179.97438 * 20 19 18 22 22 N 1.28836 * 107.98926 * 359.97438 * 21 20 19 23 23 N 1.28737 * 109.40069 * 359.73266 * 22 21 20 24 24 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 26 26 H 1.08998 * 109.47306 * 185.00014 * 12 10 9 27 27 H 1.08990 * 109.47060 * 305.00051 * 12 10 9 28 28 H 0.96701 * 113.99874 * 179.97438 * 13 12 10 29 29 H 1.09009 * 109.46837 * 174.99910 * 14 10 9 30 30 H 1.09000 * 109.47433 * 294.99642 * 14 10 9 31 31 H 0.97000 * 120.00018 * 359.97438 * 15 14 10 32 32 H 1.09000 * 109.47726 * 299.99386 * 18 16 15 33 33 H 1.08998 * 109.47231 * 60.00064 * 18 16 15 34 34 H 1.08003 * 126.66519 * 0.03394 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5475 -0.6024 12 6 2.4219 -4.0431 1.4215 13 8 1.2276 -4.2999 2.1631 14 6 1.1806 -4.7488 -0.6288 15 7 0.7341 -4.3252 -1.9582 16 6 -0.0558 -5.1331 -2.6929 17 8 -0.3966 -6.2110 -2.2537 18 6 -0.5156 -4.6970 -4.0602 19 7 -1.3556 -5.7428 -4.6495 20 6 -2.6078 -5.5922 -5.1194 21 7 -2.9900 -6.7678 -5.5553 22 7 -2.0227 -7.5970 -5.3636 23 7 -1.0314 -6.9797 -4.8218 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3880 -0.0068 26 1 3.0424 -4.9392 1.4103 27 1 2.9715 -3.2265 1.8893 28 1 1.3828 -4.5515 3.0838 29 1 1.7556 -5.6709 -0.7154 30 1 0.3131 -4.9201 0.0085 31 1 1.0063 -3.4630 -2.3094 32 1 -1.0904 -3.7750 -3.9734 33 1 0.3517 -4.5259 -4.6978 34 1 -3.1853 -4.6797 -5.1353 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571423791.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:43 Heat of formation + Delta-G solvation = 23.942589 kcal Electronic energy + Delta-G solvation = -20425.325099 eV Core-core repulsion = 17009.841572 eV Total energy + Delta-G solvation = -3415.483527 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.123 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.15516 -40.87620 -38.66487 -36.58199 -36.27266 -35.24279 -33.48207 -33.17800 -30.77146 -29.58417 -26.58546 -25.59159 -24.81956 -24.22797 -21.72474 -21.50474 -19.50079 -18.77593 -18.70087 -18.14492 -17.47232 -17.18194 -16.78800 -16.59564 -16.19783 -15.56537 -15.32639 -14.86362 -14.69717 -14.50081 -14.22909 -13.76647 -13.46526 -13.15088 -13.01048 -12.71479 -12.62181 -12.27178 -12.20814 -12.13072 -11.90320 -11.71168 -11.46324 -11.06556 -10.88111 -10.72222 -10.09957 -8.98166 -7.87656 -5.16307 0.28169 0.97192 1.25410 1.44506 1.54059 1.56021 1.61074 2.12781 2.60565 3.30135 3.45148 3.49273 3.61106 3.66186 3.91915 4.00392 4.02643 4.05548 4.40948 4.44095 4.57531 4.61836 4.72051 4.86594 5.00266 5.19068 5.23448 5.41468 5.59119 6.31372 6.46106 7.04241 7.11553 7.40863 7.58297 8.11665 8.37644 9.34487 Molecular weight = 270.12amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.004420 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.965184 B = 6333.608664 C = 7314.241508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.063 4.063 3 Si 0.963 3.037 4 H -0.274 1.274 5 H -0.303 1.303 6 H -0.288 1.288 7 C -0.238 4.238 8 H 0.080 0.920 9 N -0.720 5.720 10 C 0.163 3.837 11 H 0.084 0.916 12 C 0.061 3.939 13 O -0.585 6.585 14 C 0.132 3.868 15 N -0.697 5.697 16 C 0.496 3.504 17 O -0.576 6.576 18 C 0.097 3.903 19 N -0.296 5.296 20 C 0.182 3.818 21 N -0.344 5.344 22 N -0.118 5.118 23 N -0.095 5.095 24 H 0.249 0.751 25 H 0.374 0.626 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.385 0.615 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.419 0.581 32 H 0.192 0.808 33 H 0.171 0.829 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.586 -4.264 -6.634 8.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.256 4.256 3 Si 0.794 3.206 4 H -0.199 1.199 5 H -0.230 1.230 6 H -0.215 1.215 7 C -0.370 4.370 8 H 0.098 0.902 9 N -0.360 5.360 10 C 0.053 3.947 11 H 0.102 0.898 12 C -0.020 4.020 13 O -0.391 6.391 14 C 0.007 3.993 15 N -0.349 5.349 16 C 0.280 3.720 17 O -0.456 6.456 18 C -0.026 4.026 19 N -0.098 5.098 20 C -0.116 4.116 21 N -0.192 5.192 22 N -0.112 5.112 23 N -0.082 5.082 24 H 0.058 0.942 25 H 0.206 0.794 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.233 0.767 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.257 0.743 32 H 0.209 0.791 33 H 0.188 0.812 34 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges 2.404 -6.122 -7.165 9.727 hybrid contribution 0.361 2.152 1.180 2.481 sum 2.765 -3.970 -5.985 7.696 Atomic orbital electron populations 1.69802 1.06444 1.25842 1.59242 1.25367 0.96037 1.00423 1.03803 0.85374 0.77180 0.80046 0.78014 1.19942 1.23029 1.21454 1.19544 0.91460 0.84809 1.41151 0.90227 1.42449 1.05394 0.99993 1.88190 1.20834 0.95263 0.85314 0.93245 0.89834 1.22925 0.86536 0.98488 0.94044 1.86512 1.32947 1.91849 1.27842 1.21356 0.98437 0.97063 0.82460 1.45764 1.49916 1.21695 1.17574 1.20786 0.79034 0.84532 0.87606 1.90811 1.57752 1.23935 1.73063 1.22455 0.99410 0.88623 0.92161 1.48370 1.13631 1.08148 1.39700 1.28755 0.84925 1.02097 0.95790 1.74872 1.22745 0.99829 1.21742 1.78598 0.95092 1.23501 1.14059 1.78911 1.22956 0.91360 1.14972 0.94235 0.79374 0.91945 0.94550 0.76716 0.90709 0.93202 0.74319 0.79059 0.81201 0.69356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -52.89 13.06 21.65 0.28 -52.61 16 2 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 3 Si 0.96 41.30 29.55 68.60 2.03 43.33 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 5 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.24 -11.20 9.93 84.04 0.83 -10.36 16 8 H 0.08 3.54 7.83 -2.91 -0.02 3.52 16 9 N -0.72 -30.24 4.51 -322.93 -1.46 -31.70 16 10 C 0.16 5.24 2.84 44.99 0.13 5.37 16 11 H 0.08 2.44 8.08 -2.39 -0.02 2.42 16 12 C 0.06 1.83 6.86 71.98 0.49 2.32 16 13 O -0.58 -18.96 12.64 -148.98 -1.88 -20.85 16 14 C 0.13 3.99 5.12 86.38 0.44 4.43 16 15 N -0.70 -17.98 5.39 -463.05 -2.49 -20.47 16 16 C 0.50 12.79 7.85 87.66 0.69 13.48 16 17 O -0.58 -21.05 15.71 -3.02 -0.05 -21.09 16 18 C 0.10 1.40 6.96 85.63 0.60 1.99 16 19 N -0.30 -6.45 3.19 -355.55 -1.13 -7.59 16 20 C 0.18 3.33 12.79 180.27 2.31 5.63 16 21 N -0.34 -9.65 12.36 -60.29 -0.74 -10.39 16 22 N -0.12 -3.96 13.43 37.01 0.50 -3.46 16 23 N -0.09 -2.95 12.31 37.02 0.46 -2.50 16 24 H 0.25 13.53 8.31 -92.70 -0.77 12.76 16 25 H 0.37 17.86 7.80 -92.71 -0.72 17.14 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.38 8.72 9.12 -74.06 -0.68 8.05 16 29 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 30 H 0.05 1.82 7.39 -2.39 -0.02 1.80 16 31 H 0.42 9.85 8.14 -92.71 -0.75 9.09 16 32 H 0.19 1.05 8.08 -2.39 -0.02 1.03 16 33 H 0.17 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.29 1.36 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -79.26 306.68 0.48 -78.78 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -0.98 Total: 28.42 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 5.95 Total: 20.13 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -4.59 Total: -128.72 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -1.93 Total: -41.94 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -79.26 0.48 -78.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571423791.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.722 kcal (2) G-P(sol) polarization free energy of solvation -79.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds