Wall clock time and date at job start Mon Mar 30 2020 00:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86798 * 120.00270 * 2 1 4 4 H 1.48497 * 109.46915 * 269.99757 * 3 2 1 5 5 H 1.48494 * 109.47213 * 29.99561 * 3 2 1 6 6 H 1.48496 * 109.47017 * 149.99662 * 3 2 1 7 7 C 1.39928 * 119.99611 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99869 * 197.89539 * 7 2 1 9 9 C 1.41406 * 120.00172 * 17.89703 * 7 2 1 10 10 C 1.40787 * 120.20742 * 24.44219 * 9 7 2 11 11 C 1.37645 * 119.89232 * 180.02562 * 10 9 7 12 12 C 1.38524 * 120.32602 * 359.74105 * 11 10 9 13 13 C 1.39289 * 120.42357 * 0.51505 * 12 11 10 14 14 N 1.39682 * 119.94981 * 179.75829 * 13 12 11 15 15 C 1.46500 * 120.00223 * 359.73043 * 14 13 12 16 16 C 1.50702 * 109.47161 * 179.97438 * 15 14 13 17 17 C 1.38828 * 120.35288 * 89.99860 * 16 15 14 18 18 C 1.38380 * 118.48626 * 179.97438 * 17 16 15 19 19 C 1.38917 * 119.10928 * 0.02562 * 18 17 16 20 20 O 1.35678 * 119.68574 * 180.02562 * 19 18 17 21 21 N 1.32246 * 120.63268 * 0.02562 * 19 18 17 22 22 C 1.31968 * 121.64611 * 359.68352 * 21 19 18 23 23 C 1.38315 * 120.09462 * 359.48989 * 13 12 11 24 24 H 0.97005 * 119.99489 * 0.02562 * 1 2 3 25 25 H 1.07996 * 120.05046 * 359.97438 * 10 9 7 26 26 H 1.08002 * 119.83862 * 180.02562 * 11 10 9 27 27 H 1.08005 * 119.78651 * 180.27910 * 12 11 10 28 28 H 0.97002 * 119.99884 * 179.72069 * 14 13 12 29 29 H 1.08994 * 109.47352 * 59.99707 * 15 14 13 30 30 H 1.08996 * 109.47030 * 299.99243 * 15 14 13 31 31 H 1.08006 * 120.75989 * 359.97438 * 17 16 15 32 32 H 1.08002 * 120.44720 * 179.97438 * 18 17 16 33 33 H 0.96704 * 114.00363 * 89.99638 * 20 19 18 34 34 H 1.08002 * 119.58379 * 180.31298 * 22 21 19 35 35 H 1.08006 * 120.15800 * 180.23014 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4900 2.0463 -1.4001 5 1 1.4399 2.6526 0.6999 6 1 3.5399 1.4400 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0487 -1.2344 0.2879 9 6 1.3521 -2.4070 -0.3753 10 6 0.2216 -2.3613 -1.2131 11 6 -0.4120 -3.5286 -1.5744 12 6 0.0603 -4.7498 -1.1220 13 6 1.1745 -4.8101 -0.2883 14 7 1.6392 -6.0465 0.1661 15 6 0.9514 -7.2781 -0.2294 16 6 1.6470 -8.4629 0.3897 17 6 1.2623 -8.9278 1.6400 18 6 1.9270 -10.0188 2.1717 19 6 2.9510 -10.6082 1.4411 20 8 3.6102 -11.6788 1.9510 21 7 3.2895 -10.1358 0.2532 22 6 2.6704 -9.1006 -0.2823 23 6 1.8246 -3.6480 0.0857 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1483 -1.4119 -1.5710 26 1 -1.2789 -3.4926 -2.2175 27 1 -0.4409 -5.6606 -1.4146 28 1 2.4175 -6.0897 0.7435 29 1 0.9707 -7.3724 -1.3151 30 1 -0.0824 -7.2431 0.1140 31 1 0.4625 -8.4488 2.1853 32 1 1.6540 -10.4064 3.1421 33 1 3.2171 -12.5308 1.7171 34 1 2.9708 -8.7454 -1.2570 35 1 2.6909 -3.6939 0.7292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651091678.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:40 Heat of formation + Delta-G solvation = 15.181208 kcal Electronic energy + Delta-G solvation = -18770.878216 eV Core-core repulsion = 15733.571278 eV Total energy + Delta-G solvation = -3037.306937 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.67603 -38.01988 -37.32777 -35.18484 -33.38585 -32.52008 -30.97381 -29.75377 -27.75327 -25.32145 -24.98948 -23.91522 -22.24838 -20.72707 -20.08195 -19.06155 -17.37717 -17.08798 -16.37145 -15.89976 -15.45102 -14.74839 -14.64134 -14.28302 -14.25131 -13.57456 -13.34113 -13.11882 -12.91167 -12.57180 -12.14876 -12.08699 -11.73422 -11.53970 -11.14979 -11.05686 -10.60342 -10.41059 -10.12706 -9.81662 -9.63259 -9.32815 -9.22784 -9.02986 -8.76602 -7.39797 -6.71770 -6.25308 -4.31695 0.71831 1.00903 2.85328 3.10123 3.13820 3.21665 3.23236 3.35824 3.54995 3.97089 4.33865 4.46656 4.63720 4.70432 4.76509 4.79290 5.12009 5.38699 5.65924 5.74148 5.79536 5.83965 6.14130 6.29254 6.31414 6.51951 7.00836 7.02932 7.11513 7.20857 7.33097 7.36856 7.68930 7.75430 7.90051 8.13469 8.23324 8.49110 8.57674 8.77659 8.99452 9.10533 10.24348 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.037078 B = 0.003218 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.988667 B = 8699.293169 C = 9089.780872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.142 3.858 10 C -0.198 4.198 11 C -0.075 4.075 12 C -0.302 4.302 13 C 0.223 3.777 14 N -0.760 5.760 15 C 0.182 3.818 16 C -0.155 4.155 17 C -0.043 4.043 18 C -0.188 4.188 19 C 0.306 3.694 20 O -0.484 6.484 21 N -0.505 5.505 22 C 0.140 3.860 23 C -0.288 4.288 24 H 0.279 0.721 25 H 0.115 0.885 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.389 0.611 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.399 0.601 34 H 0.163 0.837 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.395 -15.752 1.847 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.138 3.862 10 C -0.218 4.218 11 C -0.094 4.094 12 C -0.325 4.325 13 C 0.125 3.875 14 N -0.394 5.394 15 C 0.056 3.944 16 C -0.158 4.158 17 C -0.069 4.069 18 C -0.209 4.209 19 C 0.127 3.873 20 O -0.291 6.291 21 N -0.223 5.223 22 C -0.017 4.017 23 C -0.312 4.312 24 H 0.090 0.910 25 H 0.133 0.867 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.222 0.778 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.256 0.744 34 H 0.180 0.820 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.100 -15.732 1.606 15.852 hybrid contribution -0.319 0.701 0.628 0.994 sum 0.781 -15.031 2.234 15.216 Atomic orbital electron populations 1.69865 1.07547 1.28998 1.35279 1.25895 0.94687 1.01195 0.92243 0.86346 0.80509 0.80752 0.79279 1.19304 1.20404 1.18690 1.19567 0.98110 0.91285 1.40462 0.90608 1.17337 0.90322 0.91267 0.87233 1.21193 1.00478 0.96712 1.03453 1.20438 0.97683 0.92886 0.98419 1.19846 1.03325 0.96518 1.12826 1.17447 0.93126 0.83709 0.93171 1.44416 1.34612 1.02294 1.58084 1.19842 0.95094 0.81165 0.98287 1.21124 0.99283 0.99247 0.96127 1.21542 0.97899 0.93549 0.93942 1.22113 0.96960 0.99398 1.02402 1.19233 0.89091 0.90272 0.88710 1.84786 1.55810 1.15715 1.72793 1.67209 1.28510 1.14291 1.12331 1.22538 0.90415 0.89479 0.99251 1.20397 1.06611 0.91523 1.12671 0.91024 0.86749 0.89617 0.89655 0.77826 0.91859 0.92013 0.83986 0.84159 0.74372 0.81977 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.70 10.95 55.55 0.61 -20.09 16 2 C 0.08 1.97 5.14 -17.34 -0.09 1.88 16 3 Si 0.91 18.87 29.60 -169.99 -5.03 13.84 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.46 -12.51 9.05 -37.74 -0.34 -12.85 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 9 C 0.14 3.82 5.57 -106.85 -0.60 3.23 16 10 C -0.20 -5.22 8.70 -38.84 -0.34 -5.56 16 11 C -0.08 -1.78 10.02 -39.69 -0.40 -2.18 16 12 C -0.30 -6.68 9.32 -39.09 -0.36 -7.04 16 13 C 0.22 4.90 6.64 -83.86 -0.56 4.35 16 14 N -0.76 -13.07 5.72 -59.87 -0.34 -13.41 16 15 C 0.18 2.47 5.05 -5.19 -0.03 2.45 16 16 C -0.16 -1.82 5.26 -104.48 -0.55 -2.37 16 17 C -0.04 -0.45 9.85 -39.31 -0.39 -0.84 16 18 C -0.19 -1.86 10.04 -39.28 -0.39 -2.25 16 19 C 0.31 3.51 7.74 -17.12 -0.13 3.38 16 20 O -0.48 -4.73 13.56 -18.74 -0.25 -4.99 16 21 N -0.51 -6.57 10.39 -13.33 -0.14 -6.71 16 22 C 0.14 1.68 10.85 -17.57 -0.19 1.49 16 23 C -0.29 -7.12 9.63 -38.68 -0.37 -7.49 16 24 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 25 H 0.11 3.12 6.15 -52.49 -0.32 2.79 16 26 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.09 1.66 6.70 -52.48 -0.35 1.31 16 28 H 0.39 6.38 8.47 -40.82 -0.35 6.03 16 29 H 0.06 0.85 7.88 -51.93 -0.41 0.44 16 30 H 0.06 0.84 7.90 -51.93 -0.41 0.43 16 31 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 32 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.40 1.75 9.06 45.56 0.41 2.16 16 34 H 0.16 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 307.07 15.07 4.63 4.63 Total: -1.00 -30.70 307.07 -8.36 -39.06 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -3.09 Total: 11.49 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -4.74 Total: -23.82 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.13 Total: -40.21 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.25 Total: -4.99 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.70 -8.36 -39.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651091678.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.242 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds