Wall clock time and date at job start Mon Mar 30 2020 00:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86798 * 120.00270 * 2 1 4 4 H 1.48497 * 109.46915 * 269.99757 * 3 2 1 5 5 H 1.48494 * 109.47213 * 29.99561 * 3 2 1 6 6 H 1.48496 * 109.47017 * 149.99662 * 3 2 1 7 7 C 1.39928 * 119.99611 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99869 * 197.89539 * 7 2 1 9 9 C 1.41406 * 120.00172 * 17.89703 * 7 2 1 10 10 C 1.40787 * 120.20742 * 24.44219 * 9 7 2 11 11 C 1.37645 * 119.89232 * 180.02562 * 10 9 7 12 12 C 1.38524 * 120.32602 * 359.74105 * 11 10 9 13 13 C 1.39289 * 120.42357 * 0.51505 * 12 11 10 14 14 N 1.39682 * 119.94981 * 179.75829 * 13 12 11 15 15 C 1.46500 * 120.00223 * 359.73043 * 14 13 12 16 16 C 1.50702 * 109.47161 * 179.97438 * 15 14 13 17 17 C 1.38828 * 120.35288 * 89.99860 * 16 15 14 18 18 C 1.38380 * 118.48626 * 179.97438 * 17 16 15 19 19 C 1.38917 * 119.10928 * 0.02562 * 18 17 16 20 20 O 1.35678 * 119.68574 * 180.02562 * 19 18 17 21 21 N 1.32246 * 120.63268 * 0.02562 * 19 18 17 22 22 C 1.31968 * 121.64611 * 359.68352 * 21 19 18 23 23 C 1.38315 * 120.09462 * 359.48989 * 13 12 11 24 24 H 0.97005 * 119.99489 * 0.02562 * 1 2 3 25 25 H 1.07996 * 120.05046 * 359.97438 * 10 9 7 26 26 H 1.08002 * 119.83862 * 180.02562 * 11 10 9 27 27 H 1.08005 * 119.78651 * 180.27910 * 12 11 10 28 28 H 0.97002 * 119.99884 * 179.72069 * 14 13 12 29 29 H 1.08994 * 109.47352 * 59.99707 * 15 14 13 30 30 H 1.08996 * 109.47030 * 299.99243 * 15 14 13 31 31 H 1.08006 * 120.75989 * 359.97438 * 17 16 15 32 32 H 1.08002 * 120.44720 * 179.97438 * 18 17 16 33 33 H 0.96704 * 114.00363 * 89.99638 * 20 19 18 34 34 H 1.08002 * 119.58379 * 180.31298 * 22 21 19 35 35 H 1.08006 * 120.15800 * 180.23014 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4900 2.0463 -1.4001 5 1 1.4399 2.6526 0.6999 6 1 3.5399 1.4400 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0487 -1.2344 0.2879 9 6 1.3521 -2.4070 -0.3753 10 6 0.2216 -2.3613 -1.2131 11 6 -0.4120 -3.5286 -1.5744 12 6 0.0603 -4.7498 -1.1220 13 6 1.1745 -4.8101 -0.2883 14 7 1.6392 -6.0465 0.1661 15 6 0.9514 -7.2781 -0.2294 16 6 1.6470 -8.4629 0.3897 17 6 1.2623 -8.9278 1.6400 18 6 1.9270 -10.0188 2.1717 19 6 2.9510 -10.6082 1.4411 20 8 3.6102 -11.6788 1.9510 21 7 3.2895 -10.1358 0.2532 22 6 2.6704 -9.1006 -0.2823 23 6 1.8246 -3.6480 0.0857 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1483 -1.4119 -1.5710 26 1 -1.2789 -3.4926 -2.2175 27 1 -0.4409 -5.6606 -1.4146 28 1 2.4175 -6.0897 0.7435 29 1 0.9707 -7.3724 -1.3151 30 1 -0.0824 -7.2431 0.1140 31 1 0.4625 -8.4488 2.1853 32 1 1.6540 -10.4064 3.1421 33 1 3.2171 -12.5308 1.7171 34 1 2.9708 -8.7454 -1.2570 35 1 2.6909 -3.6939 0.7292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651091678.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:40 Heat of formation + Delta-G solvation = -6.934478 kcal Electronic energy + Delta-G solvation = -18771.837224 eV Core-core repulsion = 15733.571278 eV Total energy + Delta-G solvation = -3038.265946 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.52814 -39.62772 -38.29549 -36.68075 -35.04627 -33.54492 -32.11139 -31.63799 -29.24971 -27.13364 -26.31355 -24.75069 -23.35102 -22.49383 -21.80340 -19.82958 -19.17826 -17.95538 -17.51204 -17.29869 -16.89161 -16.33077 -16.03880 -15.63618 -15.24965 -14.76591 -14.63310 -14.49051 -14.17237 -13.91533 -13.86196 -13.37252 -13.09087 -12.82456 -12.74135 -12.55441 -12.43808 -12.08630 -11.68742 -11.19167 -11.06064 -10.93346 -10.54978 -10.39927 -9.90745 -9.31794 -8.59992 -7.93964 -6.31338 -0.12891 0.18685 1.06474 1.35965 1.39895 1.52413 1.60773 2.23368 2.42172 2.69281 2.81654 3.05012 3.61339 3.73781 3.85730 3.92471 3.98329 4.31919 4.52206 4.60058 4.70564 4.76511 4.78809 4.94489 5.16113 5.18316 5.24449 5.24832 5.43183 5.51459 5.59923 5.94614 6.04235 6.22306 6.32900 6.59730 6.63283 6.87229 6.90979 7.01473 7.04389 7.24302 8.38211 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.037078 B = 0.003218 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.988667 B = 8699.293169 C = 9089.780872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.505 4.505 8 H 0.070 0.930 9 C 0.112 3.888 10 C -0.233 4.233 11 C -0.075 4.075 12 C -0.300 4.300 13 C 0.235 3.765 14 N -0.750 5.750 15 C 0.182 3.818 16 C -0.161 4.161 17 C -0.041 4.041 18 C -0.182 4.182 19 C 0.300 3.700 20 O -0.494 6.494 21 N -0.534 5.534 22 C 0.135 3.865 23 C -0.312 4.312 24 H 0.287 0.713 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.119 0.881 28 H 0.393 0.607 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.158 0.842 32 H 0.167 0.833 33 H 0.421 0.579 34 H 0.169 0.831 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.129 -17.176 2.320 17.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.534 4.534 8 H 0.088 0.912 9 C 0.110 3.890 10 C -0.253 4.253 11 C -0.094 4.094 12 C -0.323 4.323 13 C 0.134 3.866 14 N -0.383 5.383 15 C 0.058 3.942 16 C -0.163 4.163 17 C -0.067 4.067 18 C -0.203 4.203 19 C 0.122 3.878 20 O -0.304 6.304 21 N -0.253 5.253 22 C -0.022 4.022 23 C -0.337 4.337 24 H 0.097 0.903 25 H 0.113 0.887 26 H 0.127 0.873 27 H 0.137 0.863 28 H 0.227 0.773 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.176 0.824 32 H 0.184 0.816 33 H 0.282 0.718 34 H 0.186 0.814 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.830 -17.232 2.086 17.377 hybrid contribution -0.250 0.875 0.513 1.045 sum 0.581 -16.357 2.599 16.572 Atomic orbital electron populations 1.69919 1.08946 1.30326 1.35704 1.26733 0.95483 1.04384 0.91231 0.85231 0.79037 0.76073 0.79487 1.18698 1.19134 1.18424 1.19805 0.98209 0.92761 1.42661 0.91190 1.17687 0.91089 0.92358 0.87907 1.21124 1.01758 0.97054 1.05393 1.20750 0.97931 0.92649 0.98062 1.20187 1.03046 0.97157 1.11860 1.17480 0.92364 0.84735 0.92015 1.44496 1.34574 1.02010 1.57182 1.19960 0.95240 0.80053 0.98919 1.20894 0.99666 0.98904 0.96849 1.21773 0.98046 0.93469 0.93411 1.22336 0.96056 0.98758 1.03125 1.19509 0.89221 0.90687 0.88427 1.84733 1.56280 1.16675 1.72715 1.67214 1.29498 1.15052 1.13508 1.22663 0.90458 0.89429 0.99668 1.20512 1.07321 0.92179 1.13640 0.90278 0.88670 0.87257 0.86339 0.77348 0.91136 0.91198 0.82395 0.81579 0.71790 0.81359 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.25 10.95 21.82 0.24 -44.01 16 2 C 0.04 1.90 5.14 85.25 0.44 2.34 16 3 Si 0.98 39.32 29.60 68.60 2.03 41.35 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.50 -28.30 9.05 23.46 0.21 -28.08 16 8 H 0.07 3.82 7.91 -2.91 -0.02 3.80 16 9 C 0.11 6.29 5.57 -21.31 -0.12 6.17 16 10 C -0.23 -12.63 8.70 22.75 0.20 -12.43 16 11 C -0.08 -3.51 10.02 22.20 0.22 -3.29 16 12 C -0.30 -12.69 9.32 22.59 0.21 -12.48 16 13 C 0.23 10.08 6.64 38.16 0.25 10.33 16 14 N -0.75 -24.41 5.72 -343.32 -1.96 -26.38 16 15 C 0.18 4.47 5.05 85.63 0.43 4.91 16 16 C -0.16 -3.39 5.26 -19.77 -0.10 -3.49 16 17 C -0.04 -0.74 9.85 22.44 0.22 -0.52 16 18 C -0.18 -3.07 10.04 22.47 0.23 -2.85 16 19 C 0.30 6.25 7.74 84.79 0.66 6.91 16 20 O -0.49 -8.58 13.56 -89.96 -1.22 -9.80 16 21 N -0.53 -13.08 10.39 -308.95 -3.21 -16.29 16 22 C 0.13 3.01 10.85 84.63 0.92 3.93 16 23 C -0.31 -15.72 9.63 22.86 0.22 -15.50 16 24 H 0.29 13.87 8.30 -92.70 -0.77 13.10 16 25 H 0.10 5.42 6.15 -2.91 -0.02 5.41 16 26 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 27 H 0.12 4.20 6.70 -2.91 -0.02 4.18 16 28 H 0.39 12.30 8.47 -92.71 -0.79 11.51 16 29 H 0.07 1.67 7.88 -2.39 -0.02 1.65 16 30 H 0.07 1.66 7.90 -2.39 -0.02 1.64 16 31 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.42 2.73 9.06 -74.05 -0.67 2.06 16 34 H 0.17 3.35 8.06 -2.91 -0.02 3.32 16 35 H 0.09 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -67.55 307.07 -0.46 -68.01 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: -0.32 Total: 31.17 kcal Atomic # 6 Polarization: -48.04 SS G_CDS: 3.99 Total: -44.05 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -4.93 Total: -86.67 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -1.22 Total: -9.80 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -67.55 -0.46 -68.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651091678.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.072 kcal (2) G-P(sol) polarization free energy of solvation -67.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds