Wall clock time and date at job start Mon Mar 30 2020 01:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 115.56392 * 2 1 4 4 C 1.53001 * 117.49879 * 214.31262 * 2 1 3 5 5 C 1.52997 * 60.00328 * 252.51373 * 4 2 1 6 6 C 1.50705 * 117.49958 * 252.49126 * 5 4 2 7 7 O 1.21214 * 119.99652 * 68.73642 * 6 5 4 8 8 O 1.34315 * 119.99868 * 248.74557 * 6 5 4 9 9 C 1.34915 * 116.99607 * 179.97438 * 8 6 5 10 10 H 1.07994 * 120.00634 * 359.97438 * 9 8 6 11 11 C 1.38754 * 119.99912 * 179.97438 * 9 8 6 12 12 N 1.31441 * 119.99914 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00446 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47279 * 89.99884 * 13 11 9 15 15 H 1.48497 * 109.47461 * 210.00320 * 13 11 9 16 16 H 1.48504 * 109.46880 * 330.00471 * 13 11 9 17 17 C 1.50696 * 117.50490 * 107.49084 * 5 4 2 18 18 O 1.20833 * 119.99595 * 291.39596 * 17 5 4 19 19 O 1.34224 * 120.00302 * 111.39068 * 17 5 4 20 20 C 1.45206 * 117.00077 * 180.02562 * 19 17 5 21 21 C 1.52997 * 109.46989 * 60.00071 * 20 19 17 22 22 C 1.52999 * 109.46777 * 179.97438 * 20 19 17 23 23 C 1.52997 * 109.47147 * 300.00003 * 20 19 17 24 24 H 1.09003 * 109.47008 * 274.30496 * 1 2 3 25 25 H 1.08994 * 109.47045 * 34.30812 * 1 2 3 26 26 H 1.09008 * 109.47363 * 154.30920 * 1 2 3 27 27 H 1.09000 * 117.50164 * 145.02125 * 4 2 1 28 28 H 1.09005 * 117.49713 * 359.97438 * 4 2 1 29 29 H 0.96998 * 120.00189 * 179.97438 * 12 11 9 30 30 H 1.09000 * 109.47140 * 60.00134 * 21 20 19 31 31 H 1.09001 * 109.47230 * 179.97438 * 21 20 19 32 32 H 1.09001 * 109.47375 * 300.00116 * 21 20 19 33 33 H 1.09001 * 109.47362 * 60.00671 * 22 20 19 34 34 H 1.09002 * 109.46716 * 180.02562 * 22 20 19 35 35 H 1.09000 * 109.47486 * 299.99948 * 22 20 19 36 36 H 1.09001 * 109.46832 * 60.00119 * 23 20 19 37 37 H 1.09002 * 109.47153 * 179.97438 * 23 20 19 38 38 H 1.08996 * 109.46952 * 300.00100 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2364 -1.1211 0.7649 6 6 3.5294 -0.7818 1.4609 7 8 3.9709 0.3456 1.4031 8 8 4.1924 -1.7286 2.1449 9 6 5.3433 -1.3587 2.7439 10 1 5.6925 -0.3402 2.6603 11 6 6.0784 -2.2868 3.4673 12 7 5.6538 -3.5266 3.5687 13 14 7.6723 -1.7750 4.2961 14 1 7.3839 -1.3000 5.6733 15 1 8.5945 -2.9373 4.3564 16 1 8.3057 -0.6804 3.5176 17 6 1.3720 -2.1407 1.4608 18 8 0.1683 -2.0538 1.4011 19 8 1.9392 -3.1455 2.1467 20 6 1.0452 -4.0909 2.7911 21 6 0.1635 -4.7603 1.7350 22 6 1.8679 -5.1565 3.5180 23 6 0.1622 -3.3522 3.7989 24 1 -0.3633 0.0771 1.0248 25 1 -0.3633 0.8488 -0.5792 26 1 -0.3634 -0.9261 -0.4455 27 1 3.1715 -0.8752 -1.2683 28 1 1.6111 -1.8587 -1.2680 29 1 6.1678 -4.1756 4.0741 30 1 0.7926 -5.2866 1.0171 31 1 -0.5073 -5.4704 2.2187 32 1 -0.4225 -4.0014 1.2167 33 1 2.4962 -4.6799 4.2704 34 1 1.1967 -5.8665 4.0014 35 1 2.4967 -5.6827 2.7998 36 1 -0.4239 -2.5932 3.2806 37 1 -0.5093 -4.0618 4.2823 38 1 0.7903 -2.8752 4.5512 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869756131.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:27 Heat of formation + Delta-G solvation = -138.685999 kcal Electronic energy + Delta-G solvation = -22321.825649 eV Core-core repulsion = 18938.244858 eV Total energy + Delta-G solvation = -3383.580791 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73010 -39.09572 -37.58157 -35.85400 -34.72138 -33.59758 -32.11322 -28.82442 -27.12736 -26.95700 -26.01191 -24.65740 -22.20684 -20.87552 -20.09661 -18.70248 -17.72270 -17.33019 -16.15637 -15.64704 -15.27203 -14.97257 -14.49924 -14.35512 -13.91071 -13.77147 -13.45034 -13.28150 -12.82467 -12.43419 -12.25463 -11.95170 -11.90087 -11.61572 -11.49048 -11.42321 -11.33273 -11.23244 -11.15353 -10.74484 -10.50650 -10.43359 -10.21295 -9.99907 -9.89225 -9.77860 -9.37226 -8.99163 -8.54632 -6.37727 -4.05063 2.42425 2.97999 3.13726 3.19418 3.24572 3.42522 3.84053 4.04962 4.37645 4.83271 4.88514 5.03246 5.08171 5.13926 5.26293 5.30215 5.52118 5.57247 5.75740 5.80480 5.85222 5.99881 6.02191 6.06941 6.08737 6.17358 6.21368 6.27663 6.42694 6.55528 6.60430 6.68766 6.75451 7.05352 7.40048 7.95202 8.31889 8.68224 9.09070 9.87650 10.78103 Molecular weight = 270.13amu Principal moments of inertia in cm(-1) A = 0.016400 B = 0.008196 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.900961 B = 3415.443617 C = 4751.789187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.089 4.089 3 H 0.128 0.872 4 C -0.126 4.126 5 C -0.137 4.137 6 C 0.427 3.573 7 O -0.551 6.551 8 O -0.183 6.183 9 C -0.384 4.384 10 H 0.094 0.906 11 C 0.047 3.953 12 N -0.849 5.849 13 Si 0.939 3.061 14 H -0.274 1.274 15 H -0.278 1.278 16 H -0.267 1.267 17 C 0.511 3.489 18 O -0.512 6.512 19 O -0.301 6.301 20 C 0.117 3.883 21 C -0.180 4.180 22 C -0.135 4.135 23 C -0.180 4.180 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.268 0.732 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.676 -2.104 -3.763 10.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.107 4.107 3 H 0.145 0.855 4 C -0.163 4.163 5 C -0.139 4.139 6 C 0.273 3.727 7 O -0.450 6.450 8 O -0.089 6.089 9 C -0.461 4.461 10 H 0.112 0.888 11 C -0.159 4.159 12 N -0.485 5.485 13 Si 0.764 3.236 14 H -0.200 1.200 15 H -0.203 1.203 16 H -0.191 1.191 17 C 0.355 3.645 18 O -0.403 6.403 19 O -0.216 6.216 20 C 0.081 3.919 21 C -0.237 4.237 22 C -0.192 4.192 23 C -0.238 4.238 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.131 0.869 28 H 0.126 0.874 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.827 -2.090 -3.638 10.685 hybrid contribution 0.845 0.062 0.599 1.038 sum -8.982 -2.028 -3.039 9.697 Atomic orbital electron populations 1.21435 0.91022 1.01551 1.02805 1.22603 0.96086 0.94392 0.97664 0.85456 1.23250 1.03623 1.01303 0.88130 1.20573 0.96116 1.01290 0.95944 1.21401 0.85192 0.84437 0.81642 1.90558 1.68727 1.22659 1.63047 1.83960 1.33354 1.37171 1.54371 1.21255 0.96661 0.97943 1.30199 0.88823 1.25293 0.99130 0.94778 0.96670 1.70033 1.38107 1.02271 1.38091 0.85742 0.80105 0.78313 0.79436 1.19956 1.20337 1.19142 1.21924 0.86424 0.80291 0.75856 1.90513 1.15378 1.74507 1.59885 1.86898 1.39528 1.35027 1.60165 1.22136 0.89368 0.88255 0.92162 1.22482 1.00230 1.01566 0.99423 1.21745 0.99774 0.96555 1.01101 1.22464 1.00201 1.01766 0.99333 0.91189 0.92693 0.91660 0.86892 0.87389 0.92261 0.92147 0.91575 0.90123 0.90498 0.91544 0.91385 0.90161 0.91654 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 8.43 37.16 0.31 -1.24 16 2 C -0.09 -1.46 5.92 -90.62 -0.54 -2.00 16 3 H 0.13 2.12 7.67 -51.93 -0.40 1.72 16 4 C -0.13 -2.00 9.58 -26.73 -0.26 -2.26 16 5 C -0.14 -2.77 2.58 -156.81 -0.41 -3.18 16 6 C 0.43 10.94 7.44 36.01 0.27 11.21 16 7 O -0.55 -15.01 15.50 -19.05 -0.30 -15.31 16 8 O -0.18 -5.28 8.29 -27.01 -0.22 -5.50 16 9 C -0.38 -11.34 9.64 30.92 0.30 -11.04 16 10 H 0.09 2.79 6.86 -52.49 -0.36 2.43 16 11 C 0.05 1.29 5.49 -17.53 -0.10 1.20 16 12 N -0.85 -24.08 13.67 55.48 0.76 -23.33 16 13 Si 0.94 21.12 29.55 -169.99 -5.02 16.10 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 16 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 17 C 0.51 10.22 6.78 36.00 0.24 10.47 16 18 O -0.51 -9.42 8.62 -18.76 -0.16 -9.58 16 19 O -0.30 -6.46 8.43 -45.54 -0.38 -6.85 16 20 C 0.12 2.02 1.13 -90.62 -0.10 1.92 16 21 C -0.18 -2.62 8.37 37.16 0.31 -2.31 16 22 C -0.13 -2.21 8.85 37.16 0.33 -1.89 16 23 C -0.18 -2.87 8.37 37.16 0.31 -2.56 16 24 H 0.07 1.07 7.26 -51.93 -0.38 0.69 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.90 7.02 -51.92 -0.36 0.54 16 27 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.11 1.46 8.05 -51.93 -0.42 1.04 16 29 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.24 5.89 -51.93 -0.31 0.93 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.08 1.34 5.89 -51.93 -0.31 1.04 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 318.18 15.07 4.79 4.79 Total: -1.00 -32.14 318.18 -5.33 -37.46 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.47 Total: 3.89 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 0.68 Total: -1.68 kcal Atomic # 7 Polarization: -24.08 SS G_CDS: 0.76 Total: -23.33 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -1.06 Total: -37.24 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.14 -5.33 -37.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869756131.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.224 kcal (2) G-P(sol) polarization free energy of solvation -32.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds