Wall clock time and date at job start Mon Mar 30 2020 01:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 115.56392 * 2 1 4 4 C 1.53001 * 117.49879 * 214.31262 * 2 1 3 5 5 C 1.52997 * 60.00328 * 252.51373 * 4 2 1 6 6 C 1.50705 * 117.49958 * 252.49126 * 5 4 2 7 7 O 1.21214 * 119.99652 * 68.73642 * 6 5 4 8 8 O 1.34315 * 119.99868 * 248.74557 * 6 5 4 9 9 C 1.34915 * 116.99607 * 179.97438 * 8 6 5 10 10 H 1.07994 * 120.00634 * 359.97438 * 9 8 6 11 11 C 1.38754 * 119.99912 * 179.97438 * 9 8 6 12 12 N 1.31441 * 119.99914 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00446 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47279 * 89.99884 * 13 11 9 15 15 H 1.48497 * 109.47461 * 210.00320 * 13 11 9 16 16 H 1.48504 * 109.46880 * 330.00471 * 13 11 9 17 17 C 1.50696 * 117.50490 * 107.49084 * 5 4 2 18 18 O 1.20833 * 119.99595 * 291.39596 * 17 5 4 19 19 O 1.34224 * 120.00302 * 111.39068 * 17 5 4 20 20 C 1.45206 * 117.00077 * 180.02562 * 19 17 5 21 21 C 1.52997 * 109.46989 * 60.00071 * 20 19 17 22 22 C 1.52999 * 109.46777 * 179.97438 * 20 19 17 23 23 C 1.52997 * 109.47147 * 300.00003 * 20 19 17 24 24 H 1.09003 * 109.47008 * 274.30496 * 1 2 3 25 25 H 1.08994 * 109.47045 * 34.30812 * 1 2 3 26 26 H 1.09008 * 109.47363 * 154.30920 * 1 2 3 27 27 H 1.09000 * 117.50164 * 145.02125 * 4 2 1 28 28 H 1.09005 * 117.49713 * 359.97438 * 4 2 1 29 29 H 0.96998 * 120.00189 * 179.97438 * 12 11 9 30 30 H 1.09000 * 109.47140 * 60.00134 * 21 20 19 31 31 H 1.09001 * 109.47230 * 179.97438 * 21 20 19 32 32 H 1.09001 * 109.47375 * 300.00116 * 21 20 19 33 33 H 1.09001 * 109.47362 * 60.00671 * 22 20 19 34 34 H 1.09002 * 109.46716 * 180.02562 * 22 20 19 35 35 H 1.09000 * 109.47486 * 299.99948 * 22 20 19 36 36 H 1.09001 * 109.46832 * 60.00119 * 23 20 19 37 37 H 1.09002 * 109.47153 * 179.97438 * 23 20 19 38 38 H 1.08996 * 109.46952 * 300.00100 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2364 -1.1211 0.7649 6 6 3.5294 -0.7818 1.4609 7 8 3.9709 0.3456 1.4031 8 8 4.1924 -1.7286 2.1449 9 6 5.3433 -1.3587 2.7439 10 1 5.6925 -0.3402 2.6603 11 6 6.0784 -2.2868 3.4673 12 7 5.6538 -3.5266 3.5687 13 14 7.6723 -1.7750 4.2961 14 1 7.3839 -1.3000 5.6733 15 1 8.5945 -2.9373 4.3564 16 1 8.3057 -0.6804 3.5176 17 6 1.3720 -2.1407 1.4608 18 8 0.1683 -2.0538 1.4011 19 8 1.9392 -3.1455 2.1467 20 6 1.0452 -4.0909 2.7911 21 6 0.1635 -4.7603 1.7350 22 6 1.8679 -5.1565 3.5180 23 6 0.1622 -3.3522 3.7989 24 1 -0.3633 0.0771 1.0248 25 1 -0.3633 0.8488 -0.5792 26 1 -0.3634 -0.9261 -0.4455 27 1 3.1715 -0.8752 -1.2683 28 1 1.6111 -1.8587 -1.2680 29 1 6.1678 -4.1756 4.0741 30 1 0.7926 -5.2866 1.0171 31 1 -0.5073 -5.4704 2.2187 32 1 -0.4225 -4.0014 1.2167 33 1 2.4962 -4.6799 4.2704 34 1 1.1967 -5.8665 4.0014 35 1 2.4967 -5.6827 2.7998 36 1 -0.4239 -2.5932 3.2806 37 1 -0.5093 -4.0618 4.2823 38 1 0.7903 -2.8752 4.5512 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869756131.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:27 Heat of formation + Delta-G solvation = -156.994201 kcal Electronic energy + Delta-G solvation = -22322.619553 eV Core-core repulsion = 18938.244858 eV Total energy + Delta-G solvation = -3384.374694 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.24947 -40.95470 -39.16647 -37.48894 -36.61006 -34.99353 -34.25742 -30.15539 -28.34420 -28.24728 -27.85647 -26.37012 -23.91021 -22.35288 -21.51128 -20.28369 -19.84598 -19.10867 -17.69527 -17.15561 -17.12707 -16.48016 -16.35087 -16.22577 -15.30604 -15.26034 -15.09279 -14.55161 -14.23554 -13.86431 -13.65401 -13.56988 -13.21138 -13.17057 -13.07231 -12.82465 -12.78909 -12.58902 -12.48677 -12.39973 -12.18267 -12.08987 -11.96574 -11.61892 -11.43622 -11.28395 -11.04441 -10.68169 -10.65615 -8.48680 -6.28944 0.89837 1.26270 1.33915 1.49199 1.51890 1.74231 2.06163 2.51757 2.58411 3.01376 3.39151 3.48172 3.73530 3.79347 3.86106 4.01278 4.19790 4.30119 4.57362 4.60568 4.63839 4.73863 4.79026 4.81907 4.84470 4.88634 4.94952 4.98377 5.10415 5.14616 5.18051 5.28816 5.33060 5.42515 5.65048 5.83266 6.57998 6.84259 6.93124 7.76881 8.68973 Molecular weight = 270.13amu Principal moments of inertia in cm(-1) A = 0.016400 B = 0.008196 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.900961 B = 3415.443617 C = 4751.789187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.072 4.072 3 H 0.123 0.877 4 C -0.101 4.101 5 C -0.176 4.176 6 C 0.424 3.576 7 O -0.577 6.577 8 O -0.208 6.208 9 C -0.428 4.428 10 H 0.078 0.922 11 C 0.005 3.995 12 N -0.878 5.878 13 Si 1.011 2.989 14 H -0.263 1.263 15 H -0.258 1.258 16 H -0.265 1.265 17 C 0.510 3.490 18 O -0.499 6.499 19 O -0.338 6.338 20 C 0.101 3.899 21 C -0.169 4.169 22 C -0.128 4.128 23 C -0.173 4.173 24 H 0.055 0.945 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.116 0.884 28 H 0.139 0.861 29 H 0.277 0.723 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.107 0.893 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.799 -2.737 -4.275 11.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.091 4.091 3 H 0.141 0.859 4 C -0.138 4.138 5 C -0.178 4.178 6 C 0.272 3.728 7 O -0.477 6.477 8 O -0.114 6.114 9 C -0.504 4.504 10 H 0.096 0.904 11 C -0.198 4.198 12 N -0.514 5.514 13 Si 0.831 3.169 14 H -0.188 1.188 15 H -0.182 1.182 16 H -0.190 1.190 17 C 0.354 3.646 18 O -0.390 6.390 19 O -0.254 6.254 20 C 0.066 3.934 21 C -0.226 4.226 22 C -0.185 4.185 23 C -0.230 4.230 24 H 0.074 0.926 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.135 0.865 28 H 0.157 0.843 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.126 0.874 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.981 -2.732 -4.161 12.057 hybrid contribution 1.126 0.274 0.728 1.368 sum -9.856 -2.458 -3.433 10.722 Atomic orbital electron populations 1.21428 0.88755 1.03331 1.02529 1.22812 0.97567 0.93486 0.95190 0.85945 1.23504 1.04132 1.01263 0.84895 1.20752 0.94378 1.04441 0.98239 1.22439 0.86242 0.83712 0.80387 1.90511 1.69951 1.23487 1.63749 1.83991 1.33616 1.38394 1.55415 1.21432 0.98143 0.98019 1.32780 0.90424 1.26419 1.02456 0.94550 0.96362 1.70120 1.39674 1.03250 1.38347 0.84723 0.75323 0.78565 0.78338 1.18785 1.18212 1.18963 1.21786 0.86541 0.80236 0.76024 1.90500 1.14488 1.74407 1.59572 1.86876 1.41731 1.36053 1.60718 1.22558 0.89609 0.88032 0.93248 1.22396 0.99894 1.01662 0.98644 1.21735 0.99992 0.96810 0.99964 1.22410 0.99935 1.02186 0.98506 0.92634 0.89444 0.91074 0.86538 0.84281 0.91375 0.92271 0.88410 0.90808 0.93919 0.87433 0.92603 0.91035 0.88144 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.64 8.43 71.98 0.61 -2.03 16 2 C -0.07 -2.27 5.92 -10.79 -0.06 -2.34 16 3 H 0.12 3.98 7.67 -2.39 -0.02 3.96 16 4 C -0.10 -3.06 9.58 30.59 0.29 -2.76 16 5 C -0.18 -7.16 2.58 -53.67 -0.14 -7.30 16 6 C 0.42 22.61 7.44 71.24 0.53 23.14 16 7 O -0.58 -32.71 15.50 20.76 0.32 -32.39 16 8 O -0.21 -12.58 8.29 20.93 0.17 -12.41 16 9 C -0.43 -26.40 9.64 67.94 0.66 -25.74 16 10 H 0.08 4.88 6.86 -2.91 -0.02 4.86 16 11 C 0.00 0.26 5.49 84.87 0.47 0.73 16 12 N -0.88 -51.05 13.67 21.62 0.30 -50.76 16 13 Si 1.01 43.65 29.55 68.60 2.03 45.68 16 14 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 15 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 17 C 0.51 20.49 6.78 71.23 0.48 20.98 16 18 O -0.50 -17.88 8.62 21.94 0.19 -17.69 16 19 O -0.34 -14.85 8.43 -45.33 -0.38 -15.23 16 20 C 0.10 3.43 1.13 -10.80 -0.01 3.42 16 21 C -0.17 -4.56 8.37 71.98 0.60 -3.96 16 22 C -0.13 -4.20 8.85 71.98 0.64 -3.56 16 23 C -0.17 -5.40 8.37 71.98 0.60 -4.79 16 24 H 0.05 1.60 7.26 -2.39 -0.02 1.58 16 25 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.07 1.74 7.02 -2.38 -0.02 1.72 16 27 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 28 H 0.14 3.34 8.05 -2.38 -0.02 3.32 16 29 H 0.28 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 2.10 5.89 -2.39 -0.01 2.09 16 33 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 2.34 5.89 -2.39 -0.01 2.32 16 37 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -73.48 318.18 8.34 -65.13 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 1.06 Total: 21.89 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 4.66 Total: -4.21 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.30 Total: -50.76 kcal Atomic # 8 Polarization: -78.03 SS G_CDS: 0.30 Total: -77.73 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -73.48 8.34 -65.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869756131.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.859 kcal (2) G-P(sol) polarization free energy of solvation -73.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds