Wall clock time and date at job start Mon Mar 30 2020 01:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00033 * 2 1 4 4 O 1.20820 * 120.00199 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99586 * 180.02562 * 3 2 1 6 6 H 1.08995 * 112.85179 * 348.57952 * 5 3 2 7 7 C 1.53785 * 113.61234 * 217.38190 * 5 3 2 8 8 C 1.53784 * 87.08245 * 270.88556 * 7 5 3 9 9 C 1.53781 * 113.61477 * 119.88650 * 5 3 2 10 10 H 1.09004 * 113.61353 * 203.66147 * 9 5 3 11 11 C 1.50698 * 113.61520 * 334.56577 * 9 5 3 12 12 O 1.20830 * 119.99698 * 337.43732 * 11 9 5 13 13 O 1.34231 * 120.00288 * 157.43757 * 11 9 5 14 14 C 1.45199 * 117.00156 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47175 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47211 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47332 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00578 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00618 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99595 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47132 * 89.99946 * 21 19 17 23 23 H 1.48500 * 109.47071 * 210.00187 * 21 19 17 24 24 H 1.48511 * 109.47023 * 329.99978 * 21 19 17 25 25 H 1.09003 * 109.47095 * 59.99612 * 1 2 3 26 26 H 1.08997 * 109.47208 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47013 * 300.00242 * 1 2 3 28 28 H 1.09007 * 113.61244 * 25.43329 * 7 5 3 29 29 H 1.09003 * 113.61695 * 156.25161 * 7 5 3 30 30 H 1.08995 * 113.61366 * 89.11764 * 8 7 5 31 31 H 1.09001 * 113.61062 * 219.93795 * 8 7 5 32 32 H 1.08999 * 109.47053 * 300.00402 * 14 13 11 33 33 H 1.09004 * 109.46733 * 60.00336 * 14 13 11 34 34 H 1.08999 * 109.47480 * 300.00167 * 15 14 13 35 35 H 1.08998 * 109.47113 * 60.00090 * 15 14 13 36 36 H 1.08997 * 109.47271 * 300.00024 * 16 15 14 37 37 H 1.08998 * 109.47203 * 59.99907 * 16 15 14 38 38 H 0.96995 * 120.00369 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 4.0406 0.3136 0.1979 7 6 4.1233 2.4249 0.8549 8 6 4.0237 3.3041 -0.4029 9 6 4.1444 2.0083 -1.2223 10 1 5.1733 1.7310 -1.4517 11 6 3.2439 1.9718 -2.4301 12 8 2.4100 1.1038 -2.5359 13 8 3.3681 2.9035 -3.3884 14 6 2.4677 2.8061 -4.5233 15 6 2.7567 3.9453 -5.5028 16 6 1.8075 3.8430 -6.6984 17 6 2.0925 4.9647 -7.6635 18 1 2.8730 5.6790 -7.4461 19 6 1.3570 5.0794 -8.8241 20 7 1.6060 6.0580 -9.6666 21 14 0.0076 3.8437 -9.2005 22 1 -1.2773 4.3255 -8.6326 23 1 -0.1276 3.6910 -10.6714 24 1 0.3549 2.5321 -8.5965 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.4549 2.7348 1.6583 29 1 5.1460 2.2608 1.1947 30 1 3.0602 3.8018 -0.5124 31 1 4.8674 3.9824 -0.5293 32 1 2.6164 1.8494 -5.0239 33 1 1.4369 2.8784 -4.1764 34 1 2.6077 4.9019 -5.0019 35 1 3.7875 3.8735 -5.8497 36 1 1.9560 2.8866 -7.1995 37 1 0.7768 3.9151 -6.3512 38 1 1.0884 6.1388 -10.4829 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873468769.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:19 Heat of formation + Delta-G solvation = -161.220358 kcal Electronic energy + Delta-G solvation = -20817.101494 eV Core-core repulsion = 17432.543540 eV Total energy + Delta-G solvation = -3384.557954 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.60276 -39.97588 -38.34840 -36.46825 -36.18188 -34.07656 -31.85747 -28.81808 -28.29209 -26.90448 -26.40065 -23.18264 -22.34861 -21.28125 -20.29419 -19.63508 -18.16275 -17.40246 -17.06495 -16.73437 -16.48137 -16.19903 -15.57342 -15.42113 -14.31233 -14.22380 -13.86200 -13.53942 -13.26947 -12.96846 -12.76931 -12.50023 -12.30641 -12.21866 -11.96465 -11.82553 -11.38156 -11.06277 -11.00271 -10.91459 -10.86462 -10.52357 -10.45288 -10.34462 -9.97680 -9.79931 -9.71803 -9.25072 -8.56918 -6.07159 -4.06156 1.94205 2.23679 2.49423 2.78724 3.29802 3.37191 3.40758 3.87582 4.04493 4.30248 4.41216 4.42883 4.77491 4.87118 4.98261 5.06324 5.10500 5.18436 5.26139 5.36735 5.41750 5.44811 5.46936 5.49041 5.64014 5.85777 5.92659 6.30716 6.33887 6.38864 6.65213 6.79750 7.20852 7.32233 7.63279 7.71353 7.81175 8.49675 8.97080 9.54403 11.06037 Molecular weight = 270.13amu Principal moments of inertia in cm(-1) A = 0.027239 B = 0.003766 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.676397 B = 7433.995038 C = 8120.892104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.349 6.349 3 C 0.491 3.509 4 O -0.506 6.506 5 C -0.097 4.097 6 H 0.117 0.883 7 C -0.118 4.118 8 C -0.124 4.124 9 C -0.091 4.091 10 H 0.144 0.856 11 C 0.465 3.535 12 O -0.509 6.509 13 O -0.348 6.348 14 C 0.066 3.934 15 C -0.101 4.101 16 C -0.011 4.011 17 C -0.522 4.522 18 H 0.074 0.926 19 C 0.068 3.932 20 N -0.901 5.901 21 Si 0.879 3.121 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.266 1.266 25 H 0.065 0.935 26 H 0.099 0.901 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.019 0.981 37 H 0.014 0.986 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.838 -11.758 23.357 26.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.264 6.264 3 C 0.334 3.666 4 O -0.394 6.394 5 C -0.117 4.117 6 H 0.135 0.865 7 C -0.156 4.156 8 C -0.161 4.161 9 C -0.110 4.110 10 H 0.162 0.838 11 C 0.308 3.692 12 O -0.398 6.398 13 O -0.264 6.264 14 C -0.007 4.007 15 C -0.138 4.138 16 C -0.048 4.048 17 C -0.560 4.560 18 H 0.092 0.908 19 C -0.134 4.134 20 N -0.540 5.540 21 Si 0.706 3.294 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.190 1.190 25 H 0.084 0.916 26 H 0.118 0.882 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.275 -11.631 23.097 26.211 hybrid contribution -1.103 -0.740 -0.558 1.441 sum 3.172 -12.371 22.539 25.905 Atomic orbital electron populations 1.23235 0.76182 1.03532 1.02506 1.86437 1.23457 1.32945 1.83605 1.22623 0.90663 0.81633 0.71695 1.90657 1.66845 1.36328 1.45590 1.22036 0.89484 1.02274 0.97856 0.86520 1.22857 1.02100 0.93320 0.97279 1.23041 1.05010 0.95100 0.92986 1.22525 1.00037 0.99931 0.88500 0.83829 1.23338 0.82876 0.79102 0.83886 1.90671 1.35207 1.36157 1.77784 1.86495 1.58595 1.50363 1.30935 1.23518 0.92015 1.01497 0.83700 1.21555 1.01775 0.95749 0.94769 1.19519 0.94350 0.98063 0.92872 1.21054 1.19887 1.11500 1.03509 0.90767 1.25007 0.97067 0.95333 0.95950 1.69902 1.41115 1.31527 1.11473 0.86792 0.82617 0.82530 0.77444 1.20191 1.21242 1.19022 0.91643 0.88224 0.92165 0.89798 0.87814 0.87962 0.89257 0.91523 0.91629 0.91490 0.91470 0.96304 0.96743 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.47 16 2 O -0.35 -4.45 10.52 -40.87 -0.43 -4.88 16 3 C 0.49 6.45 4.68 36.01 0.17 6.62 16 4 O -0.51 -7.90 14.83 -19.86 -0.29 -8.19 16 5 C -0.10 -0.90 4.27 -90.96 -0.39 -1.29 16 6 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 7 C -0.12 -0.81 7.49 -25.92 -0.19 -1.00 16 8 C -0.12 -1.13 7.18 -25.91 -0.19 -1.31 16 9 C -0.09 -0.91 4.21 -90.96 -0.38 -1.30 16 10 H 0.14 0.96 8.14 -51.93 -0.42 0.54 16 11 C 0.47 7.04 6.82 36.00 0.25 7.29 16 12 O -0.51 -9.01 14.38 -21.31 -0.31 -9.31 16 13 O -0.35 -5.79 10.22 -39.26 -0.40 -6.19 16 14 C 0.07 1.20 5.47 37.16 0.20 1.40 16 15 C -0.10 -2.06 5.53 -26.74 -0.15 -2.20 16 16 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 17 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 18 H 0.07 2.28 7.99 -52.48 -0.42 1.86 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 20 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 21 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 25 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 26 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 28 H 0.08 0.61 8.09 -51.92 -0.42 0.19 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 1.22 7.01 -51.93 -0.36 0.85 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.19 8.13 -51.93 -0.42 0.76 16 33 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 37 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 323.22 15.07 4.87 4.87 Total: -1.00 -34.82 323.22 -6.40 -41.22 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -5.79 Total: -3.47 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -0.16 Total: -4.14 kcal Atomic # 7 Polarization: -27.93 SS G_CDS: 0.77 Total: -27.15 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -1.43 Total: -28.57 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.82 -6.40 -41.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873468769.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.000 kcal (2) G-P(sol) polarization free energy of solvation -34.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds