Wall clock time and date at job start Mon Mar 30 2020 01:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00033 * 2 1 4 4 O 1.20820 * 120.00199 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99586 * 180.02562 * 3 2 1 6 6 H 1.08995 * 112.85179 * 348.57952 * 5 3 2 7 7 C 1.53785 * 113.61234 * 217.38190 * 5 3 2 8 8 C 1.53784 * 87.08245 * 270.88556 * 7 5 3 9 9 C 1.53781 * 113.61477 * 119.88650 * 5 3 2 10 10 H 1.09004 * 113.61353 * 203.66147 * 9 5 3 11 11 C 1.50698 * 113.61520 * 334.56577 * 9 5 3 12 12 O 1.20830 * 119.99698 * 337.43732 * 11 9 5 13 13 O 1.34231 * 120.00288 * 157.43757 * 11 9 5 14 14 C 1.45199 * 117.00156 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47175 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47211 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47332 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00578 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00618 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99595 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47132 * 89.99946 * 21 19 17 23 23 H 1.48500 * 109.47071 * 210.00187 * 21 19 17 24 24 H 1.48511 * 109.47023 * 329.99978 * 21 19 17 25 25 H 1.09003 * 109.47095 * 59.99612 * 1 2 3 26 26 H 1.08997 * 109.47208 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47013 * 300.00242 * 1 2 3 28 28 H 1.09007 * 113.61244 * 25.43329 * 7 5 3 29 29 H 1.09003 * 113.61695 * 156.25161 * 7 5 3 30 30 H 1.08995 * 113.61366 * 89.11764 * 8 7 5 31 31 H 1.09001 * 113.61062 * 219.93795 * 8 7 5 32 32 H 1.08999 * 109.47053 * 300.00402 * 14 13 11 33 33 H 1.09004 * 109.46733 * 60.00336 * 14 13 11 34 34 H 1.08999 * 109.47480 * 300.00167 * 15 14 13 35 35 H 1.08998 * 109.47113 * 60.00090 * 15 14 13 36 36 H 1.08997 * 109.47271 * 300.00024 * 16 15 14 37 37 H 1.08998 * 109.47203 * 59.99907 * 16 15 14 38 38 H 0.96995 * 120.00369 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 4.0406 0.3136 0.1979 7 6 4.1233 2.4249 0.8549 8 6 4.0237 3.3041 -0.4029 9 6 4.1444 2.0083 -1.2223 10 1 5.1733 1.7310 -1.4517 11 6 3.2439 1.9718 -2.4301 12 8 2.4100 1.1038 -2.5359 13 8 3.3681 2.9035 -3.3884 14 6 2.4677 2.8061 -4.5233 15 6 2.7567 3.9453 -5.5028 16 6 1.8075 3.8430 -6.6984 17 6 2.0925 4.9647 -7.6635 18 1 2.8730 5.6790 -7.4461 19 6 1.3570 5.0794 -8.8241 20 7 1.6060 6.0580 -9.6666 21 14 0.0076 3.8437 -9.2005 22 1 -1.2773 4.3255 -8.6326 23 1 -0.1276 3.6910 -10.6714 24 1 0.3549 2.5321 -8.5965 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.4549 2.7348 1.6583 29 1 5.1460 2.2608 1.1947 30 1 3.0602 3.8018 -0.5124 31 1 4.8674 3.9824 -0.5293 32 1 2.6164 1.8494 -5.0239 33 1 1.4369 2.8784 -4.1764 34 1 2.6077 4.9019 -5.0019 35 1 3.7875 3.8735 -5.8497 36 1 1.9560 2.8866 -7.1995 37 1 0.7768 3.9151 -6.3512 38 1 1.0884 6.1388 -10.4829 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873468769.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:19 Heat of formation + Delta-G solvation = -182.664837 kcal Electronic energy + Delta-G solvation = -20818.031396 eV Core-core repulsion = 17432.543540 eV Total energy + Delta-G solvation = -3385.487857 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.55180 -41.12476 -39.22812 -37.77891 -37.18029 -35.97915 -33.91207 -29.94924 -29.50527 -28.14094 -27.15977 -24.91254 -23.18939 -22.43706 -22.10227 -20.51510 -19.19557 -19.04101 -18.43372 -17.92449 -17.83114 -17.27766 -16.47478 -16.34053 -16.27878 -15.57104 -15.02755 -14.84901 -14.49788 -14.17981 -14.06732 -13.88789 -13.71335 -13.22659 -13.06657 -12.89487 -12.67913 -12.59464 -12.23035 -12.13100 -12.03196 -11.82151 -11.79860 -11.56520 -11.46652 -11.42048 -11.32593 -11.18754 -10.80690 -8.33085 -6.38239 0.93071 1.15643 1.34026 1.35108 1.46961 1.53393 1.79184 2.32747 3.01782 3.13108 3.33118 3.53519 3.67362 3.82716 3.91766 3.95953 4.15001 4.22668 4.25706 4.30230 4.45939 4.61163 4.64357 4.67412 4.69453 4.74446 4.90694 4.93891 5.03906 5.24551 5.27331 5.43105 5.44712 5.46376 5.58655 6.22542 6.56860 6.68773 6.69399 7.26297 8.83474 Molecular weight = 270.13amu Principal moments of inertia in cm(-1) A = 0.027239 B = 0.003766 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.676397 B = 7433.995038 C = 8120.892104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.479 3.521 4 O -0.543 6.543 5 C -0.102 4.102 6 H 0.148 0.852 7 C -0.097 4.097 8 C -0.130 4.130 9 C -0.088 4.088 10 H 0.188 0.812 11 C 0.456 3.544 12 O -0.540 6.540 13 O -0.353 6.353 14 C 0.075 3.925 15 C -0.091 4.091 16 C -0.009 4.009 17 C -0.535 4.535 18 H 0.037 0.963 19 C 0.008 3.992 20 N -0.948 5.948 21 Si 0.948 3.052 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.248 1.248 25 H 0.041 0.959 26 H 0.131 0.869 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.148 0.852 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.026 0.974 37 H 0.020 0.980 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.719 -13.824 25.050 29.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.324 3.676 4 O -0.433 6.433 5 C -0.121 4.121 6 H 0.166 0.834 7 C -0.134 4.134 8 C -0.168 4.168 9 C -0.106 4.106 10 H 0.205 0.795 11 C 0.301 3.699 12 O -0.430 6.430 13 O -0.269 6.269 14 C 0.002 3.998 15 C -0.128 4.128 16 C -0.046 4.046 17 C -0.573 4.573 18 H 0.055 0.945 19 C -0.190 4.190 20 N -0.588 5.588 21 Si 0.771 3.229 22 H -0.192 1.192 23 H -0.205 1.205 24 H -0.171 1.171 25 H 0.060 0.940 26 H 0.149 0.851 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.166 0.834 30 H 0.083 0.917 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.038 0.962 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.172 -13.709 24.817 28.820 hybrid contribution -1.356 -0.041 -1.047 1.714 sum 3.817 -13.750 23.770 27.724 Atomic orbital electron populations 1.23418 0.75429 1.05381 1.01735 1.86440 1.24449 1.33077 1.83329 1.23561 0.92426 0.81126 0.70499 1.90639 1.68038 1.37349 1.47270 1.22305 0.86835 1.04823 0.98147 0.83408 1.22930 1.04124 0.90672 0.95688 1.23053 1.04015 0.95369 0.94348 1.22948 1.00886 1.00872 0.85880 0.79456 1.24505 0.83129 0.77920 0.84328 1.90657 1.36698 1.37247 1.78413 1.86491 1.58087 1.51354 1.30948 1.23150 0.92010 1.00505 0.84150 1.21311 1.00883 0.96534 0.94112 1.19443 0.95492 0.96399 0.93314 1.21381 1.18942 1.12175 1.04807 0.94467 1.25972 0.99841 0.97459 0.95699 1.70045 1.42770 1.33720 1.12264 0.85689 0.79200 0.80350 0.77619 1.19229 1.20544 1.17149 0.93981 0.85122 0.91374 0.90444 0.83406 0.91658 0.86947 0.90966 0.92334 0.92063 0.91335 0.95553 0.96187 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.89 16 2 O -0.36 -8.84 10.52 -49.84 -0.52 -9.36 16 3 C 0.48 12.22 4.68 71.24 0.33 12.56 16 4 O -0.54 -17.23 14.83 23.05 0.34 -16.89 16 5 C -0.10 -1.60 4.27 -11.01 -0.05 -1.65 16 6 H 0.15 1.39 8.14 -2.39 -0.02 1.37 16 7 C -0.10 -0.98 7.49 31.12 0.23 -0.75 16 8 C -0.13 -2.07 7.18 31.12 0.22 -1.85 16 9 C -0.09 -1.50 4.21 -11.01 -0.05 -1.55 16 10 H 0.19 1.57 8.14 -2.38 -0.02 1.55 16 11 C 0.46 13.29 6.82 71.24 0.49 13.77 16 12 O -0.54 -18.84 14.38 24.40 0.35 -18.49 16 13 O -0.35 -11.47 10.22 -51.42 -0.53 -11.99 16 14 C 0.08 2.71 5.47 71.98 0.39 3.10 16 15 C -0.09 -3.69 5.53 30.59 0.17 -3.52 16 16 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 17 C -0.54 -31.37 9.66 25.60 0.25 -31.12 16 18 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16 19 C 0.01 0.45 5.47 84.66 0.46 0.91 16 20 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 21 Si 0.95 44.82 27.47 68.60 1.88 46.71 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 25 H 0.04 1.04 8.13 -2.39 -0.02 1.02 16 26 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.07 1.25 8.13 -2.38 -0.02 1.23 16 28 H 0.08 0.94 8.09 -2.38 -0.02 0.92 16 29 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.06 1.55 7.01 -2.39 -0.02 1.53 16 31 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 2.50 8.13 -2.39 -0.02 2.48 16 33 H 0.06 2.17 8.13 -2.39 -0.02 2.15 16 34 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.03 1.22 7.20 -2.39 -0.02 1.20 16 37 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 38 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -78.55 323.22 6.59 -71.96 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 0.99 Total: 6.19 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 3.77 Total: -8.53 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: 0.30 Total: -59.60 kcal Atomic # 8 Polarization: -56.37 SS G_CDS: -0.36 Total: -56.73 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.71 kcal Total: -78.55 6.59 -71.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873468769.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.705 kcal (2) G-P(sol) polarization free energy of solvation -78.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds