Wall clock time and date at job start Mon Mar 30 2020 01:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47115 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00288 * 180.02562 * 10 9 7 12 12 O 1.21587 * 120.00069 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00510 * 180.02562 * 11 10 9 14 14 C 1.46492 * 120.00382 * 180.02562 * 13 11 10 15 15 H 1.08996 * 110.04634 * 33.54155 * 14 13 11 16 16 C 1.54362 * 110.05404 * 272.03812 * 14 13 11 17 17 C 1.54924 * 104.20183 * 217.18975 * 16 14 13 18 18 C 1.54964 * 102.78910 * 37.75223 * 17 16 14 19 19 C 1.53527 * 110.06187 * 154.99887 * 14 13 11 20 20 O 1.43365 * 110.17723 * 359.88756 * 19 14 13 21 21 C 1.44887 * 104.69669 * 214.55800 * 20 19 14 22 22 C 1.54946 * 101.77361 * 35.72451 * 21 20 19 23 23 O 1.42979 * 110.38220 * 239.12624 * 19 14 13 24 24 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 25 25 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 26 26 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 27 27 H 0.97001 * 120.00220 * 359.97438 * 10 9 7 28 28 H 0.97010 * 119.99793 * 359.97438 * 13 11 10 29 29 H 1.08999 * 110.48525 * 335.86314 * 16 14 13 30 30 H 1.08997 * 110.48789 * 98.51058 * 16 14 13 31 31 H 1.08998 * 110.74903 * 279.42842 * 17 16 14 32 32 H 1.09002 * 110.90766 * 156.15306 * 17 16 14 33 33 H 1.09001 * 110.50076 * 203.68495 * 18 17 16 34 34 H 1.08995 * 110.61497 * 81.05400 * 18 17 16 35 35 H 1.08998 * 110.96812 * 277.60588 * 21 20 19 36 36 H 1.08994 * 110.99614 * 153.85663 * 21 20 19 37 37 H 1.09000 * 110.69187 * 206.26816 * 22 21 20 38 38 H 1.08999 * 110.83927 * 83.14327 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 7 2.2030 -3.6126 0.0164 11 6 1.7538 -4.8833 0.0214 12 8 0.5584 -5.1055 0.0215 13 7 2.6295 -5.9078 0.0265 14 6 2.1412 -7.2889 0.0314 15 1 1.2127 -7.3589 -0.5351 16 6 1.9146 -7.7650 1.4821 17 6 2.3536 -9.2507 1.4676 18 6 3.5805 -9.2365 0.5210 19 6 3.1986 -8.2235 -0.5732 20 8 4.3541 -7.4727 -0.9687 21 6 4.8385 -8.1429 -2.1584 22 6 3.5154 -8.5838 -2.8338 23 8 2.6673 -8.9061 -1.7117 24 1 -0.4850 0.8401 -0.0041 25 1 0.6241 -2.5528 0.9015 26 1 0.6247 -2.5609 -0.8785 27 1 3.1567 -3.4355 0.0152 28 1 3.5833 -5.7305 0.0261 29 1 2.5326 -7.1914 2.1728 30 1 0.8616 -7.6811 1.7511 31 1 1.5626 -9.8832 1.0650 32 1 2.6400 -9.5814 2.4660 33 1 3.7400 -10.2241 0.0881 34 1 4.4721 -8.9055 1.0533 35 1 5.4500 -9.0067 -1.8978 36 1 5.3916 -7.4541 -2.7969 37 1 3.6763 -9.4616 -3.4596 38 1 3.0881 -7.7690 -3.4182 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888907402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:07 Heat of formation + Delta-G solvation = -120.975868 kcal Electronic energy + Delta-G solvation = -21376.072980 eV Core-core repulsion = 18025.552909 eV Total energy + Delta-G solvation = -3350.520071 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.11627 -38.99535 -36.69605 -35.27498 -34.05833 -33.16344 -32.13096 -30.05724 -28.14696 -26.93661 -25.98871 -23.55589 -22.55697 -21.12702 -20.47203 -19.93137 -18.21001 -17.39149 -16.93553 -16.13927 -15.78818 -15.51734 -15.13721 -14.67563 -14.46517 -14.17029 -14.13449 -13.54800 -13.13597 -12.97935 -12.84957 -12.57777 -12.14177 -11.91790 -11.81984 -11.55461 -11.42126 -11.21265 -10.88878 -10.87313 -10.76255 -10.38603 -10.25738 -9.82523 -9.32011 -9.29625 -8.69431 -8.57158 -7.67550 -6.10965 -4.16986 2.96634 3.26954 3.33720 3.37105 3.62778 3.71395 4.00718 4.26919 4.36156 4.39645 4.46265 4.67433 4.85163 4.92458 5.17425 5.19400 5.25124 5.31211 5.32842 5.47909 5.50057 5.56183 5.61073 5.69916 5.84396 5.90771 6.17856 6.28412 6.78904 7.10685 7.22926 7.59815 7.63687 7.63724 7.99192 8.13084 8.83109 9.04282 9.41149 9.55823 10.99426 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.029660 B = 0.004049 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.818283 B = 6913.120006 C = 7327.214653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.694 3.306 12 O -0.603 6.603 13 N -0.741 5.741 14 C 0.162 3.838 15 H 0.105 0.895 16 C -0.134 4.134 17 C -0.120 4.120 18 C -0.142 4.142 19 C 0.248 3.752 20 O -0.365 6.365 21 C 0.018 3.982 22 C 0.019 3.981 23 O -0.370 6.370 24 H 0.265 0.735 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.386 0.614 28 H 0.398 0.602 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.406 -19.837 -2.017 22.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.081 0.919 9 C 0.146 3.854 10 N -0.381 5.381 11 C 0.393 3.607 12 O -0.482 6.482 13 N -0.399 5.399 14 C 0.054 3.946 15 H 0.123 0.877 16 C -0.173 4.173 17 C -0.158 4.158 18 C -0.180 4.180 19 C 0.170 3.830 20 O -0.285 6.285 21 C -0.058 4.058 22 C -0.057 4.057 23 O -0.291 6.291 24 H 0.074 0.926 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.218 0.782 28 H 0.233 0.767 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.128 0.872 37 H 0.117 0.883 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.009 -19.790 -1.918 22.260 hybrid contribution 1.425 1.058 -0.221 1.788 sum 11.434 -18.732 -2.139 22.050 Atomic orbital electron populations 1.69996 1.06082 1.27074 1.49205 1.24949 0.94899 0.99370 0.94842 0.86365 0.79815 0.83038 0.77692 1.19679 1.20852 1.20833 1.21280 0.93306 0.90461 1.52766 0.91917 1.18968 0.87802 0.81097 0.97557 1.45686 1.10740 1.04356 1.77338 1.16152 0.85176 0.81088 0.78235 1.90859 1.14269 1.84201 1.58868 1.44983 1.09336 1.03913 1.81702 1.21522 0.96541 0.80212 0.96320 0.87720 1.22828 1.02885 0.95282 0.96324 1.22413 0.97066 0.96962 0.99357 1.22918 0.99662 0.99044 0.96348 1.24080 0.83768 0.87761 0.87417 1.89125 1.42631 1.52746 1.44011 1.24388 0.96751 0.98291 0.86399 1.24246 0.89356 1.02009 0.90131 1.88895 1.52447 1.70277 1.17479 0.92571 0.95760 0.95818 0.78184 0.76671 0.90629 0.90209 0.90801 0.90791 0.90335 0.89419 0.90640 0.87250 0.88273 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.54 -15.04 9.28 -34.44 -0.32 -15.36 16 8 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 9 C 0.27 7.38 5.43 -5.20 -0.03 7.35 16 10 N -0.73 -16.45 5.55 -66.42 -0.37 -16.82 16 11 C 0.69 15.24 8.56 -86.92 -0.74 14.50 16 12 O -0.60 -15.72 16.00 5.29 0.08 -15.63 16 13 N -0.74 -12.50 4.82 -57.72 -0.28 -12.77 16 14 C 0.16 2.45 3.06 -66.95 -0.21 2.24 16 15 H 0.10 1.87 7.38 -51.93 -0.38 1.48 16 16 C -0.13 -1.76 6.54 -25.00 -0.16 -1.93 16 17 C -0.12 -1.20 6.91 -24.68 -0.17 -1.37 16 18 C -0.14 -1.40 6.28 -25.21 -0.16 -1.55 16 19 C 0.25 3.05 1.37 -25.97 -0.04 3.01 16 20 O -0.37 -4.29 9.11 -59.03 -0.54 -4.83 16 21 C 0.02 0.15 7.94 38.18 0.30 0.45 16 22 C 0.02 0.17 8.08 38.18 0.31 0.48 16 23 O -0.37 -4.64 10.77 -59.03 -0.64 -5.27 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.39 7.56 8.34 -40.82 -0.34 7.22 16 28 H 0.40 5.92 7.22 -40.82 -0.29 5.63 16 29 H 0.08 1.00 8.05 -51.93 -0.42 0.58 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 34 H 0.09 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 315.64 15.07 4.76 4.76 Total: -1.00 -34.07 315.64 -8.19 -42.26 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -5.61 Total: 8.51 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -1.31 Total: 9.51 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.09 Total: -55.47 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -1.09 Total: -25.73 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.07 -8.19 -42.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888907402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.720 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds