Wall clock time and date at job start Mon Mar 30 2020 01:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47115 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00288 * 180.02562 * 10 9 7 12 12 O 1.21587 * 120.00069 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00510 * 180.02562 * 11 10 9 14 14 C 1.46492 * 120.00382 * 180.02562 * 13 11 10 15 15 H 1.08996 * 110.04634 * 33.54155 * 14 13 11 16 16 C 1.54362 * 110.05404 * 272.03812 * 14 13 11 17 17 C 1.54924 * 104.20183 * 217.18975 * 16 14 13 18 18 C 1.54964 * 102.78910 * 37.75223 * 17 16 14 19 19 C 1.53527 * 110.06187 * 154.99887 * 14 13 11 20 20 O 1.43365 * 110.17723 * 359.88756 * 19 14 13 21 21 C 1.44887 * 104.69669 * 214.55800 * 20 19 14 22 22 C 1.54946 * 101.77361 * 35.72451 * 21 20 19 23 23 O 1.42979 * 110.38220 * 239.12624 * 19 14 13 24 24 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 25 25 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 26 26 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 27 27 H 0.97001 * 120.00220 * 359.97438 * 10 9 7 28 28 H 0.97010 * 119.99793 * 359.97438 * 13 11 10 29 29 H 1.08999 * 110.48525 * 335.86314 * 16 14 13 30 30 H 1.08997 * 110.48789 * 98.51058 * 16 14 13 31 31 H 1.08998 * 110.74903 * 279.42842 * 17 16 14 32 32 H 1.09002 * 110.90766 * 156.15306 * 17 16 14 33 33 H 1.09001 * 110.50076 * 203.68495 * 18 17 16 34 34 H 1.08995 * 110.61497 * 81.05400 * 18 17 16 35 35 H 1.08998 * 110.96812 * 277.60588 * 21 20 19 36 36 H 1.08994 * 110.99614 * 153.85663 * 21 20 19 37 37 H 1.09000 * 110.69187 * 206.26816 * 22 21 20 38 38 H 1.08999 * 110.83927 * 83.14327 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 7 2.2030 -3.6126 0.0164 11 6 1.7538 -4.8833 0.0214 12 8 0.5584 -5.1055 0.0215 13 7 2.6295 -5.9078 0.0265 14 6 2.1412 -7.2889 0.0314 15 1 1.2127 -7.3589 -0.5351 16 6 1.9146 -7.7650 1.4821 17 6 2.3536 -9.2507 1.4676 18 6 3.5805 -9.2365 0.5210 19 6 3.1986 -8.2235 -0.5732 20 8 4.3541 -7.4727 -0.9687 21 6 4.8385 -8.1429 -2.1584 22 6 3.5154 -8.5838 -2.8338 23 8 2.6673 -8.9061 -1.7117 24 1 -0.4850 0.8401 -0.0041 25 1 0.6241 -2.5528 0.9015 26 1 0.6247 -2.5609 -0.8785 27 1 3.1567 -3.4355 0.0152 28 1 3.5833 -5.7305 0.0261 29 1 2.5326 -7.1914 2.1728 30 1 0.8616 -7.6811 1.7511 31 1 1.5626 -9.8832 1.0650 32 1 2.6400 -9.5814 2.4660 33 1 3.7400 -10.2241 0.0881 34 1 4.4721 -8.9055 1.0533 35 1 5.4500 -9.0067 -1.8978 36 1 5.3916 -7.4541 -2.7969 37 1 3.6763 -9.4616 -3.4596 38 1 3.0881 -7.7690 -3.4182 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888907402.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:07 Heat of formation + Delta-G solvation = -147.410203 kcal Electronic energy + Delta-G solvation = -21377.219259 eV Core-core repulsion = 18025.552909 eV Total energy + Delta-G solvation = -3351.666350 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.07301 -40.68111 -37.81723 -36.15404 -36.10091 -34.74913 -34.09665 -30.82477 -29.73560 -28.37035 -27.20605 -24.67829 -24.22748 -22.20684 -21.79945 -21.34744 -19.94177 -18.51369 -18.11553 -17.64438 -17.01945 -16.83846 -16.46097 -16.38326 -16.02043 -15.43224 -15.08727 -14.81598 -14.78540 -14.17974 -14.04564 -13.88165 -13.65855 -13.48003 -13.05752 -12.84848 -12.75314 -12.51333 -12.31045 -12.21492 -12.10488 -11.69796 -11.44876 -11.31377 -11.10592 -10.82394 -10.78842 -10.19931 -9.59076 -8.28258 -6.44874 1.43442 1.45541 1.58494 1.71737 2.21378 2.37749 2.55834 2.76420 3.06667 3.37835 3.48037 3.55277 3.72575 4.02825 4.08382 4.14538 4.34215 4.39362 4.42835 4.58155 4.62928 4.75733 4.83665 4.90598 4.96210 5.07799 5.09556 5.13603 5.26221 5.29508 5.48932 5.50981 5.67025 5.84852 6.09700 6.27037 6.66894 7.24125 7.30662 7.70923 8.84547 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.029660 B = 0.004049 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.818283 B = 6913.120006 C = 7327.214653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.988 3.012 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.286 3.714 10 N -0.722 5.722 11 C 0.692 3.308 12 O -0.649 6.649 13 N -0.717 5.717 14 C 0.148 3.852 15 H 0.068 0.932 16 C -0.134 4.134 17 C -0.111 4.111 18 C -0.131 4.131 19 C 0.251 3.749 20 O -0.383 6.383 21 C 0.018 3.982 22 C 0.010 3.990 23 O -0.391 6.391 24 H 0.269 0.731 25 H -0.014 1.014 26 H -0.016 1.016 27 H 0.404 0.596 28 H 0.412 0.588 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.715 -20.588 -1.977 25.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.811 3.189 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.592 4.592 8 H 0.101 0.899 9 C 0.163 3.837 10 N -0.376 5.376 11 C 0.392 3.608 12 O -0.532 6.532 13 N -0.375 5.375 14 C 0.042 3.958 15 H 0.087 0.913 16 C -0.173 4.173 17 C -0.148 4.148 18 C -0.169 4.169 19 C 0.173 3.827 20 O -0.303 6.303 21 C -0.058 4.058 22 C -0.066 4.066 23 O -0.312 6.312 24 H 0.078 0.922 25 H 0.004 0.996 26 H 0.002 0.998 27 H 0.239 0.761 28 H 0.250 0.750 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.398 -20.600 -1.885 24.646 hybrid contribution 0.350 1.216 -0.301 1.301 sum 13.749 -19.383 -2.186 23.865 Atomic orbital electron populations 1.70158 1.08320 1.28528 1.49998 1.26086 0.95789 1.03904 0.93800 0.85065 0.79006 0.77109 0.77719 1.17664 1.20368 1.20366 1.21621 0.94290 0.90403 1.52879 0.89862 1.18422 0.88087 0.83339 0.93901 1.45288 1.10860 1.03710 1.77697 1.16307 0.85063 0.81634 0.77828 1.90826 1.16662 1.84897 1.60785 1.44750 1.09236 1.03653 1.79846 1.21783 0.96618 0.79657 0.97788 0.91346 1.22779 1.01844 0.98027 0.94677 1.22403 0.97304 0.94109 1.01013 1.22898 0.99699 0.99091 0.95168 1.24011 0.82956 0.87528 0.88195 1.89081 1.42206 1.53651 1.45383 1.24664 0.96359 0.99516 0.85243 1.24490 0.89410 1.03063 0.89605 1.88883 1.53819 1.70036 1.18452 0.92216 0.99618 0.99807 0.76120 0.75044 0.90512 0.92211 0.90693 0.88281 0.88417 0.88078 0.87985 0.85549 0.85179 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.99 43.04 29.54 68.60 2.03 45.07 16 4 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -31.12 9.28 25.60 0.24 -30.88 16 8 H 0.08 4.24 7.60 -2.91 -0.02 4.22 16 9 C 0.29 16.54 5.43 85.63 0.46 17.01 16 10 N -0.72 -33.45 5.55 -482.32 -2.68 -36.12 16 11 C 0.69 31.60 8.56 179.06 1.53 33.13 16 12 O -0.65 -35.94 16.00 -3.99 -0.06 -36.01 16 13 N -0.72 -24.47 4.82 -454.77 -2.19 -26.67 16 14 C 0.15 4.58 3.06 45.63 0.14 4.72 16 15 H 0.07 2.61 7.38 -2.39 -0.02 2.59 16 16 C -0.13 -3.54 6.54 31.71 0.21 -3.33 16 17 C -0.11 -1.98 6.91 31.92 0.22 -1.76 16 18 C -0.13 -2.18 6.28 31.58 0.20 -1.98 16 19 C 0.25 5.83 1.37 31.08 0.04 5.87 16 20 O -0.38 -8.16 9.11 -126.22 -1.15 -9.31 16 21 C 0.02 0.24 7.94 72.65 0.58 0.82 16 22 C 0.01 0.17 8.08 72.65 0.59 0.75 16 23 O -0.39 -9.37 10.77 -126.22 -1.36 -10.73 16 24 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 25 H -0.01 -0.92 8.14 -2.39 -0.02 -0.93 16 26 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 27 H 0.40 15.67 8.34 -92.71 -0.77 14.89 16 28 H 0.41 11.90 7.22 -92.70 -0.67 11.23 16 29 H 0.08 1.99 8.05 -2.39 -0.02 1.97 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.10 1.32 8.06 -2.39 -0.02 1.30 16 34 H 0.10 1.46 8.07 -2.39 -0.02 1.44 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -77.55 315.64 -0.83 -78.38 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: -0.36 Total: 27.46 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: 4.67 Total: 25.02 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -4.59 Total: -119.88 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -2.57 Total: -56.05 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -77.55 -0.83 -78.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888907402.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.035 kcal (2) G-P(sol) polarization free energy of solvation -77.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds