Wall clock time and date at job start Mon Mar 30 2020 01:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99859 * 2 1 4 4 H 1.48499 * 109.47162 * 269.99865 * 3 2 1 5 5 H 1.48501 * 109.47141 * 29.99820 * 3 2 1 6 6 H 1.48494 * 109.47014 * 149.99623 * 3 2 1 7 7 C 1.37874 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00568 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99400 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46914 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47028 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99934 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99919 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99825 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.46958 * 180.02562 * 14 13 11 16 16 H 1.08996 * 110.33025 * 57.74642 * 15 14 13 17 17 C 1.54475 * 110.37062 * 179.97438 * 15 14 13 18 18 C 1.54511 * 104.05986 * 142.80850 * 17 15 14 19 19 C 1.54472 * 104.06661 * 0.02562 * 18 17 15 20 20 H 1.08999 * 110.37443 * 94.95912 * 19 18 17 21 21 C 1.50696 * 110.37460 * 217.19138 * 19 18 17 22 22 N 1.34777 * 120.00076 * 295.00023 * 21 19 18 23 23 O 1.21281 * 120.00074 * 114.99525 * 21 19 18 24 24 O 1.44422 * 110.37183 * 295.37947 * 15 14 13 25 25 H 0.96994 * 120.00176 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47275 * 60.00891 * 9 7 2 27 27 H 1.09001 * 109.47633 * 300.00672 * 9 7 2 28 28 H 1.09001 * 109.46950 * 60.00925 * 10 9 7 29 29 H 1.08997 * 109.47247 * 300.00153 * 10 9 7 30 30 H 0.97002 * 119.99568 * 0.02562 * 13 11 10 31 31 H 1.08995 * 109.46944 * 59.99745 * 14 13 11 32 32 H 1.09001 * 109.47328 * 299.99966 * 14 13 11 33 33 H 1.09000 * 110.51231 * 24.16666 * 17 15 14 34 34 H 1.08994 * 110.51183 * 261.45181 * 17 15 14 35 35 H 1.09007 * 110.50900 * 241.35218 * 18 17 15 36 36 H 1.09005 * 110.51211 * 118.65054 * 18 17 15 37 37 H 0.97001 * 120.00485 * 180.02562 * 22 21 19 38 38 H 0.97005 * 119.99790 * 359.72082 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5286 -2.6365 0.0001 12 8 6.1350 -1.5861 -0.0004 13 7 6.2025 -3.8037 -0.0003 14 6 7.6675 -3.8036 -0.0008 15 6 8.1775 -5.2462 -0.0018 16 1 7.7892 -5.7845 -0.8664 17 6 9.7221 -5.2704 -0.0030 18 6 10.0794 -6.4705 0.9021 19 6 8.7085 -7.0298 1.3426 20 1 8.4026 -7.8447 0.6866 21 6 8.7696 -7.5030 2.7720 22 7 9.5579 -8.5447 3.1039 23 8 8.1096 -6.9465 3.6238 24 8 7.7984 -5.9143 1.2211 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6797 0.8896 27 1 3.8746 -0.6806 -0.8904 28 1 3.6580 -3.1505 -0.8898 29 1 3.6586 -3.1502 0.8903 30 1 5.7174 -4.6437 -0.0010 31 1 8.0311 -3.2899 0.8891 32 1 8.0305 -3.2897 -0.8908 33 1 10.1189 -4.3453 0.4150 34 1 10.1008 -5.4276 -1.0129 35 1 10.6529 -6.1386 1.7677 36 1 10.6349 -7.2211 0.3397 37 1 9.5970 -8.8496 4.0239 38 1 10.0828 -8.9923 2.4219 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324046862.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:57 Heat of formation + Delta-G solvation = -133.677432 kcal Electronic energy + Delta-G solvation = -20254.013784 eV Core-core repulsion = 16902.942932 eV Total energy + Delta-G solvation = -3351.070852 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.71042 -39.26118 -38.54496 -34.62361 -34.20283 -33.39367 -32.52526 -31.36411 -30.45026 -27.04195 -25.41457 -23.10367 -21.68487 -21.08263 -20.93875 -19.52374 -18.16249 -17.43362 -17.17885 -16.81119 -16.06038 -15.89561 -15.69381 -14.94246 -14.87967 -14.57482 -14.09012 -14.02091 -13.35503 -13.25205 -12.82160 -12.49759 -12.29627 -12.28192 -11.93802 -11.75925 -11.33144 -11.26977 -10.89167 -10.45601 -10.14650 -10.08377 -10.04449 -9.96795 -9.71795 -9.16820 -9.09008 -8.79469 -8.44397 -5.96868 -3.95097 2.18984 2.67447 3.22298 3.41614 3.42967 3.49189 3.61398 3.66870 3.98504 4.21098 4.33037 4.53645 4.56960 4.61615 4.75361 4.95180 4.98244 5.21141 5.38313 5.38692 5.44155 5.53382 5.57810 5.86286 6.18018 6.20251 6.23566 6.38240 6.68966 6.79500 6.84647 7.44306 7.52171 7.83555 7.84000 7.89151 8.57292 8.74894 9.06796 9.66417 11.16101 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.034237 B = 0.003158 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.630778 B = 8863.642929 C = 9299.728035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.523 4.523 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.122 4.122 11 C 0.511 3.489 12 O -0.544 6.544 13 N -0.738 5.738 14 C 0.128 3.872 15 C 0.060 3.940 16 H 0.082 0.918 17 C -0.146 4.146 18 C -0.143 4.143 19 C 0.055 3.945 20 H 0.097 0.903 21 C 0.520 3.480 22 N -0.854 5.854 23 O -0.514 6.514 24 O -0.334 6.334 25 H 0.263 0.737 26 H 0.024 0.976 27 H 0.019 0.981 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.402 0.598 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.405 0.595 38 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.098 -20.803 -0.553 32.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.162 4.162 11 C 0.300 3.700 12 O -0.420 6.420 13 N -0.392 5.392 14 C 0.003 3.997 15 C 0.002 3.998 16 H 0.099 0.901 17 C -0.184 4.184 18 C -0.182 4.182 19 C -0.007 4.007 20 H 0.115 0.885 21 C 0.303 3.697 22 N -0.421 5.421 23 O -0.388 6.388 24 O -0.252 6.252 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.236 0.764 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.237 0.763 38 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 24.688 -19.323 0.020 31.351 hybrid contribution 0.620 -0.100 -0.114 0.638 sum 25.309 -19.423 -0.094 31.903 Atomic orbital electron populations 1.69917 1.06290 1.26903 1.51295 1.24977 0.94714 0.99234 0.94397 0.86784 0.80667 0.83370 0.78676 1.20286 1.21490 1.18492 1.21136 0.89341 0.94563 1.51066 0.90926 1.19372 0.96345 0.90306 0.97632 1.21661 0.87974 1.03185 1.03381 1.21526 0.91613 0.82688 0.74215 1.90643 1.70865 1.31497 1.49036 1.46052 1.06067 1.09512 1.77521 1.21319 0.81952 0.93397 1.02996 1.23383 0.94222 0.94014 0.88164 0.90052 1.22925 0.95137 0.99414 1.00959 1.22916 0.96067 0.98469 1.00703 1.22844 0.91251 0.92413 0.94182 0.88498 1.20255 0.79175 0.79938 0.90316 1.43744 1.48778 1.35210 1.14326 1.90833 1.41876 1.55207 1.50846 1.89386 1.53403 1.40761 1.41609 0.92777 0.95806 0.96307 0.89662 0.89509 0.76383 0.90879 0.90203 0.89604 0.89506 0.90000 0.89401 0.76300 0.77106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.73 13.96 55.43 0.77 -27.96 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 23.23 27.47 -169.99 -4.67 18.56 16 4 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.26 -6.90 6.54 56.52 0.37 -6.53 16 7 C -0.52 -15.47 9.66 -34.44 -0.33 -15.81 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C 0.00 0.04 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.52 5.64 -27.88 -0.16 -2.67 16 11 C 0.51 9.93 7.83 -10.98 -0.09 9.85 16 12 O -0.54 -12.63 15.98 5.55 0.09 -12.54 16 13 N -0.74 -10.81 5.52 -60.29 -0.33 -11.15 16 14 C 0.13 1.57 5.29 -4.04 -0.02 1.55 16 15 C 0.06 0.53 3.33 -25.96 -0.09 0.44 16 16 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 17 C -0.15 -0.88 6.63 -25.16 -0.17 -1.04 16 18 C -0.14 -0.70 6.61 -25.17 -0.17 -0.86 16 19 C 0.05 0.41 3.71 -27.11 -0.10 0.31 16 20 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 21 C 0.52 4.85 7.35 -10.99 -0.08 4.77 16 22 N -0.85 -3.65 8.86 31.22 0.28 -3.38 16 23 O -0.51 -7.91 17.39 -13.67 -0.24 -8.15 16 24 O -0.33 -3.86 10.57 -54.46 -0.58 -4.43 16 25 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 26 H 0.02 0.65 7.16 -51.93 -0.37 0.28 16 27 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 28 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 29 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 30 H 0.40 5.00 8.47 -40.82 -0.35 4.65 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 0.57 7.87 -51.93 -0.41 0.16 16 34 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.45 7.87 -51.93 -0.41 0.04 16 36 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.41 1.50 8.93 -40.82 -0.36 1.14 16 38 H 0.40 0.28 8.83 -40.82 -0.36 -0.09 16 LS Contribution 323.43 15.07 4.87 4.87 Total: -1.00 -40.31 323.43 -6.81 -47.12 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -5.62 Total: -1.39 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.39 Total: -1.56 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.72 Total: -42.48 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.72 Total: -25.12 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.67 Total: 18.56 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -40.31 -6.81 -47.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324046862.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.561 kcal (2) G-P(sol) polarization free energy of solvation -40.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds