Wall clock time and date at job start Mon Mar 30 2020 01:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99859 * 2 1 4 4 H 1.48499 * 109.47162 * 269.99865 * 3 2 1 5 5 H 1.48501 * 109.47141 * 29.99820 * 3 2 1 6 6 H 1.48494 * 109.47014 * 149.99623 * 3 2 1 7 7 C 1.37874 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00568 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99400 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46914 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47028 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99934 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99919 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99825 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.46958 * 180.02562 * 14 13 11 16 16 H 1.08996 * 110.33025 * 57.74642 * 15 14 13 17 17 C 1.54475 * 110.37062 * 179.97438 * 15 14 13 18 18 C 1.54511 * 104.05986 * 142.80850 * 17 15 14 19 19 C 1.54472 * 104.06661 * 0.02562 * 18 17 15 20 20 H 1.08999 * 110.37443 * 94.95912 * 19 18 17 21 21 C 1.50696 * 110.37460 * 217.19138 * 19 18 17 22 22 N 1.34777 * 120.00076 * 295.00023 * 21 19 18 23 23 O 1.21281 * 120.00074 * 114.99525 * 21 19 18 24 24 O 1.44422 * 110.37183 * 295.37947 * 15 14 13 25 25 H 0.96994 * 120.00176 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47275 * 60.00891 * 9 7 2 27 27 H 1.09001 * 109.47633 * 300.00672 * 9 7 2 28 28 H 1.09001 * 109.46950 * 60.00925 * 10 9 7 29 29 H 1.08997 * 109.47247 * 300.00153 * 10 9 7 30 30 H 0.97002 * 119.99568 * 0.02562 * 13 11 10 31 31 H 1.08995 * 109.46944 * 59.99745 * 14 13 11 32 32 H 1.09001 * 109.47328 * 299.99966 * 14 13 11 33 33 H 1.09000 * 110.51231 * 24.16666 * 17 15 14 34 34 H 1.08994 * 110.51183 * 261.45181 * 17 15 14 35 35 H 1.09007 * 110.50900 * 241.35218 * 18 17 15 36 36 H 1.09005 * 110.51211 * 118.65054 * 18 17 15 37 37 H 0.97001 * 120.00485 * 180.02562 * 22 21 19 38 38 H 0.97005 * 119.99790 * 359.72082 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5286 -2.6365 0.0001 12 8 6.1350 -1.5861 -0.0004 13 7 6.2025 -3.8037 -0.0003 14 6 7.6675 -3.8036 -0.0008 15 6 8.1775 -5.2462 -0.0018 16 1 7.7892 -5.7845 -0.8664 17 6 9.7221 -5.2704 -0.0030 18 6 10.0794 -6.4705 0.9021 19 6 8.7085 -7.0298 1.3426 20 1 8.4026 -7.8447 0.6866 21 6 8.7696 -7.5030 2.7720 22 7 9.5579 -8.5447 3.1039 23 8 8.1096 -6.9465 3.6238 24 8 7.7984 -5.9143 1.2211 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6797 0.8896 27 1 3.8746 -0.6806 -0.8904 28 1 3.6580 -3.1505 -0.8898 29 1 3.6586 -3.1502 0.8903 30 1 5.7174 -4.6437 -0.0010 31 1 8.0311 -3.2899 0.8891 32 1 8.0305 -3.2897 -0.8908 33 1 10.1189 -4.3453 0.4150 34 1 10.1008 -5.4276 -1.0129 35 1 10.6529 -6.1386 1.7677 36 1 10.6349 -7.2211 0.3397 37 1 9.5970 -8.8496 4.0239 38 1 10.0828 -8.9923 2.4219 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324046862.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:57 Heat of formation + Delta-G solvation = -168.005272 kcal Electronic energy + Delta-G solvation = -20255.502351 eV Core-core repulsion = 16902.942932 eV Total energy + Delta-G solvation = -3352.559419 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.39282 -40.61765 -39.40733 -35.91017 -35.48805 -34.85057 -33.39499 -33.05063 -31.40505 -28.47615 -26.77111 -23.95167 -22.84194 -22.36789 -21.56704 -21.03017 -19.23078 -18.70365 -18.01713 -17.73602 -17.32498 -16.96519 -16.80783 -16.30455 -16.20524 -15.65327 -15.27463 -14.85451 -14.68853 -14.64729 -14.54847 -13.78354 -13.61594 -13.39947 -12.89109 -12.79199 -12.62183 -12.43908 -12.08462 -11.97094 -11.77053 -11.72653 -11.40994 -11.13797 -10.78466 -10.78153 -10.74588 -10.69201 -10.09418 -8.31950 -6.35018 1.32804 1.34697 1.50724 1.53050 1.67747 2.11370 2.28252 2.35154 3.01374 3.03420 3.47164 3.71259 3.89675 3.99832 4.03013 4.10670 4.14838 4.38876 4.42318 4.48037 4.51138 4.64599 4.84003 4.91265 4.99584 5.03313 5.12725 5.31640 5.43924 5.47214 5.60626 5.70488 5.88887 6.23203 6.44086 6.56694 6.71036 7.29251 7.30321 7.31437 8.83912 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.034237 B = 0.003158 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.630778 B = 8863.642929 C = 9299.728035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.530 4.530 8 H 0.049 0.951 9 C 0.006 3.994 10 C -0.118 4.118 11 C 0.513 3.487 12 O -0.588 6.588 13 N -0.717 5.717 14 C 0.122 3.878 15 C 0.064 3.936 16 H 0.108 0.892 17 C -0.143 4.143 18 C -0.134 4.134 19 C 0.049 3.951 20 H 0.132 0.868 21 C 0.514 3.486 22 N -0.827 5.827 23 O -0.590 6.590 24 O -0.378 6.378 25 H 0.268 0.732 26 H 0.007 0.993 27 H 0.012 0.988 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.415 0.585 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.131 0.869 37 H 0.410 0.590 38 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.652 -22.534 -1.957 35.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.185 4.185 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.568 4.568 8 H 0.067 0.933 9 C -0.032 4.032 10 C -0.157 4.157 11 C 0.301 3.699 12 O -0.468 6.468 13 N -0.370 5.370 14 C -0.001 4.001 15 C 0.006 3.994 16 H 0.126 0.874 17 C -0.182 4.182 18 C -0.172 4.172 19 C -0.011 4.011 20 H 0.149 0.851 21 C 0.298 3.702 22 N -0.393 5.393 23 O -0.469 6.469 24 O -0.297 6.297 25 H 0.077 0.923 26 H 0.025 0.975 27 H 0.031 0.969 28 H 0.124 0.876 29 H 0.113 0.887 30 H 0.251 0.749 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.136 0.864 35 H 0.090 0.910 36 H 0.149 0.851 37 H 0.242 0.758 38 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 27.303 -21.164 -1.413 34.574 hybrid contribution -0.154 0.285 0.344 0.472 sum 27.149 -20.879 -1.069 34.266 Atomic orbital electron populations 1.70026 1.07782 1.28143 1.52501 1.25826 0.95543 1.02937 0.94199 0.85793 0.79103 0.79319 0.79293 1.18971 1.20272 1.18839 1.21436 0.91234 0.93761 1.50404 0.93268 1.19219 0.93959 0.93678 0.96367 1.21497 0.89354 0.99988 1.04890 1.21184 0.91061 0.83358 0.74250 1.90624 1.71394 1.33213 1.51564 1.45860 1.07429 1.08557 1.75136 1.21530 0.79951 0.96395 1.02252 1.23459 0.96147 0.91495 0.88266 0.87409 1.22965 0.92813 0.99460 1.02915 1.22957 0.94717 0.98927 1.00567 1.23172 0.92186 0.92437 0.93330 0.85050 1.20798 0.78568 0.80063 0.90740 1.43554 1.47063 1.33411 1.15305 1.90800 1.45288 1.57933 1.52889 1.89347 1.55055 1.42436 1.42849 0.92328 0.97491 0.96941 0.87587 0.88652 0.74852 0.93365 0.89251 0.90901 0.86414 0.91020 0.85062 0.75820 0.74585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.64 13.96 21.45 0.30 -60.34 16 2 C 0.01 0.77 5.47 84.65 0.46 1.23 16 3 Si 0.94 48.25 27.47 68.60 1.88 50.14 16 4 H -0.26 -12.98 7.11 99.48 0.71 -12.28 16 5 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.26 -13.60 6.54 99.48 0.65 -12.95 16 7 C -0.53 -31.85 9.66 25.60 0.25 -31.61 16 8 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 9 C 0.01 0.30 3.33 29.85 0.10 0.40 16 10 C -0.12 -4.80 5.64 29.85 0.17 -4.63 16 11 C 0.51 19.77 7.83 87.66 0.69 20.46 16 12 O -0.59 -27.46 15.98 -3.04 -0.05 -27.50 16 13 N -0.72 -20.29 5.52 -463.05 -2.56 -22.84 16 14 C 0.12 2.88 5.29 86.38 0.46 3.34 16 15 C 0.06 0.97 3.33 31.10 0.10 1.07 16 16 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 17 C -0.14 -1.26 6.63 31.61 0.21 -1.05 16 18 C -0.13 -0.81 6.61 31.61 0.21 -0.60 16 19 C 0.05 0.61 3.71 30.35 0.11 0.72 16 20 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 21 C 0.51 9.04 7.35 87.66 0.64 9.69 16 22 N -0.83 -5.28 8.86 -173.53 -1.54 -6.82 16 23 O -0.59 -18.72 17.39 15.35 0.27 -18.45 16 24 O -0.38 -8.24 10.57 -130.60 -1.38 -9.62 16 25 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 26 H 0.01 0.37 7.16 -2.38 -0.02 0.35 16 27 H 0.01 0.65 7.53 -2.39 -0.02 0.64 16 28 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 29 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 30 H 0.42 9.64 8.47 -92.71 -0.79 8.85 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 0.84 7.87 -2.39 -0.02 0.82 16 34 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.07 0.61 7.87 -2.38 -0.02 0.59 16 36 H 0.13 -0.31 8.14 -2.38 -0.02 -0.33 16 37 H 0.41 2.40 8.93 -92.71 -0.83 1.57 16 38 H 0.42 -0.92 8.83 -92.70 -0.82 -1.74 16 Total: -1.00 -91.53 323.43 -1.06 -92.59 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -1.39 Total: 3.84 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 3.40 Total: -0.99 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -3.79 Total: -90.00 kcal Atomic # 8 Polarization: -54.42 SS G_CDS: -1.16 Total: -55.58 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 1.88 Total: 50.14 kcal Total: -91.53 -1.06 -92.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324046862.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.415 kcal (2) G-P(sol) polarization free energy of solvation -91.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds