Wall clock time and date at job start Mon Mar 30 2020 01:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 13 13 O 1.42900 * 109.47466 * 294.99832 * 12 10 9 14 14 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 15 15 N 1.46500 * 109.47361 * 304.99744 * 14 10 9 16 16 C 1.34770 * 120.00423 * 180.02562 * 15 14 10 17 17 O 1.21287 * 120.00246 * 359.97438 * 16 15 14 18 18 C 1.50704 * 120.00338 * 180.02562 * 16 15 14 19 19 H 1.08996 * 115.50664 * 325.58793 * 18 16 15 20 20 C 1.53000 * 117.43237 * 110.95339 * 18 16 15 21 21 H 1.09001 * 119.80838 * 355.36949 * 20 18 16 22 22 C 1.54540 * 118.02856 * 198.16930 * 20 18 16 23 23 O 1.44423 * 104.72935 * 273.04727 * 22 20 18 24 24 C 1.44417 * 105.27802 * 40.52574 * 23 22 20 25 25 C 1.52996 * 117.43438 * 180.21258 * 18 16 15 26 26 H 1.08998 * 119.81125 * 5.64943 * 25 18 16 27 27 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 29 29 H 1.08997 * 109.47191 * 55.00866 * 12 10 9 30 30 H 1.09004 * 109.46584 * 175.00049 * 12 10 9 31 31 H 0.96700 * 113.99900 * 180.02562 * 13 12 10 32 32 H 1.09005 * 109.47349 * 64.99828 * 14 10 9 33 33 H 1.09002 * 109.47351 * 184.99998 * 14 10 9 34 34 H 0.96998 * 119.99598 * 0.02562 * 15 14 10 35 35 H 1.09000 * 110.39392 * 154.23806 * 22 20 18 36 36 H 1.09006 * 110.51036 * 31.90553 * 22 20 18 37 37 H 1.08998 * 110.37508 * 200.66015 * 24 23 22 38 38 H 1.08999 * 110.37541 * 78.32171 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5536 0.5765 12 6 2.4217 -4.0280 -1.4525 13 8 1.2275 -4.2770 -2.1967 14 6 1.1807 -4.7552 0.5904 15 7 0.7342 -4.3456 1.9242 16 6 -0.0548 -5.1616 2.6508 17 8 -0.3956 -6.2349 2.2004 18 6 -0.5146 -4.7400 4.0227 19 1 0.1984 -4.1467 4.5950 20 6 -2.0004 -4.4213 4.2010 21 1 -2.6642 -4.4307 3.3365 22 6 -2.4226 -3.5950 5.4368 23 8 -2.6168 -4.5718 6.4828 24 6 -1.5376 -5.5183 6.3247 25 6 -1.4044 -5.7136 4.7981 26 1 -1.6044 -6.7054 4.3924 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0068 29 1 2.9714 -3.2065 -1.9118 30 1 3.0422 -4.9242 -1.4507 31 1 1.3826 -4.5188 -3.1200 32 1 0.3131 -4.9198 -0.0486 33 1 1.7556 -5.6782 0.6673 34 1 1.0064 -3.4871 2.2843 35 1 -3.3524 -3.0621 5.2378 36 1 -1.6358 -2.8934 5.7142 37 1 -1.7874 -6.4629 6.8077 38 1 -0.6137 -5.1129 6.7373 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331771669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:50 Heat of formation + Delta-G solvation = -85.618712 kcal Electronic energy + Delta-G solvation = -20866.524597 eV Core-core repulsion = 17517.537727 eV Total energy + Delta-G solvation = -3348.986870 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.67243 -38.86651 -37.13230 -34.98776 -34.50182 -33.49527 -31.38965 -28.82781 -28.49734 -26.60955 -24.79338 -23.66215 -21.99606 -20.72631 -20.17922 -19.70800 -17.77593 -17.27485 -16.64053 -16.07831 -15.88548 -15.37467 -15.20686 -14.92919 -14.43887 -14.11206 -13.57294 -13.45758 -13.16994 -12.93673 -12.91082 -12.65942 -12.00227 -11.83642 -11.63165 -11.45160 -10.91406 -10.88775 -10.62369 -10.46327 -10.31428 -10.13850 -9.83033 -9.77624 -9.60192 -9.38493 -9.01677 -8.62516 -7.07780 -5.85108 -3.15687 2.59921 3.30586 3.36666 3.41844 3.43876 3.66223 3.89988 4.47565 4.51902 4.52191 4.80421 4.80743 4.89752 5.04821 5.17909 5.24444 5.37824 5.47807 5.52211 5.52557 5.61224 5.64759 5.85968 5.96995 5.98947 6.01239 6.02294 6.33035 6.47359 6.56081 6.70459 6.86931 7.58789 7.90989 8.17560 8.31726 8.53678 9.44142 9.99035 10.35681 11.36399 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.015799 B = 0.005127 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.860737 B = 5460.404171 C = 6842.989752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.249 4.249 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.165 3.835 11 H 0.066 0.934 12 C 0.059 3.941 13 O -0.560 6.560 14 C 0.118 3.882 15 N -0.705 5.705 16 C 0.540 3.460 17 O -0.552 6.552 18 C -0.146 4.146 19 H 0.123 0.877 20 C -0.162 4.162 21 H 0.128 0.872 22 C 0.073 3.927 23 O -0.374 6.374 24 C 0.073 3.927 25 C -0.165 4.165 26 H 0.133 0.867 27 H 0.256 0.744 28 H 0.389 0.611 29 H 0.049 0.951 30 H 0.027 0.973 31 H 0.364 0.636 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.411 0.589 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.899 -9.467 7.705 12.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.380 4.380 8 H 0.088 0.912 9 N -0.355 5.355 10 C 0.054 3.946 11 H 0.084 0.916 12 C -0.022 4.022 13 O -0.364 6.364 14 C -0.006 4.006 15 N -0.356 5.356 16 C 0.325 3.675 17 O -0.431 6.431 18 C -0.167 4.167 19 H 0.141 0.859 20 C -0.181 4.181 21 H 0.146 0.854 22 C -0.003 4.003 23 O -0.293 6.293 24 C -0.003 4.003 25 C -0.183 4.183 26 H 0.151 0.849 27 H 0.066 0.934 28 H 0.223 0.777 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.209 0.791 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.247 0.753 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.327 -9.914 8.146 12.835 hybrid contribution 0.910 1.331 -0.885 1.839 sum 1.236 -8.583 7.261 11.310 Atomic orbital electron populations 1.69677 1.05104 1.25764 1.56695 1.24745 0.95446 0.97649 1.02527 0.86228 0.78645 0.83915 0.77545 1.21743 1.21750 1.20755 1.19214 0.90911 0.84051 1.43869 0.91199 1.42372 1.06051 0.99032 1.88011 1.20595 0.95032 0.87023 0.91935 0.91640 1.23033 0.86509 0.97299 0.95366 1.86569 1.32164 1.92099 1.25535 1.21568 0.99544 0.96939 0.82530 1.45901 1.50253 1.21659 1.17741 1.19390 0.78431 0.84235 0.85404 1.90667 1.57300 1.23068 1.72082 1.22382 0.94678 1.03482 0.96134 0.85934 1.24130 0.94306 0.98271 1.01384 0.85364 1.22977 1.02309 0.90737 0.84274 1.89172 1.49080 1.38768 1.52265 1.22941 0.90754 0.93907 0.92720 1.24136 1.03543 0.96513 0.94149 0.84877 0.93399 0.77667 0.93296 0.95524 0.79128 0.90579 0.92097 0.75265 0.87975 0.91397 0.88267 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.86 13.06 55.49 0.72 -26.14 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.38 29.55 -169.99 -5.02 16.35 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.25 -6.45 9.93 -15.06 -0.15 -6.60 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.71 -16.68 4.51 -53.42 -0.24 -16.92 16 10 C 0.17 3.09 2.84 -67.93 -0.19 2.89 16 11 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 12 C 0.06 1.01 6.86 37.16 0.25 1.27 16 13 O -0.56 -9.93 12.64 -35.23 -0.45 -10.37 16 14 C 0.12 2.09 5.12 -4.04 -0.02 2.07 16 15 N -0.70 -11.88 5.39 -60.29 -0.32 -12.21 16 16 C 0.54 9.05 7.61 -10.99 -0.08 8.96 16 17 O -0.55 -10.89 16.34 5.55 0.09 -10.80 16 18 C -0.15 -1.94 5.74 -91.77 -0.53 -2.47 16 19 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 20 C -0.16 -2.09 6.91 -89.11 -0.62 -2.71 16 21 H 0.13 1.76 8.14 -51.93 -0.42 1.34 16 22 C 0.07 0.84 7.44 37.97 0.28 1.12 16 23 O -0.37 -4.67 11.65 -35.23 -0.41 -5.08 16 24 C 0.07 0.76 7.44 37.94 0.28 1.05 16 25 C -0.16 -2.02 6.64 -89.15 -0.59 -2.61 16 26 H 0.13 1.74 7.82 -51.93 -0.41 1.33 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.39 10.15 7.80 -40.82 -0.32 9.83 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.36 4.63 9.12 45.56 0.42 5.04 16 32 H 0.08 1.52 7.39 -51.93 -0.38 1.14 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.41 6.91 8.14 -40.82 -0.33 6.57 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 324.25 15.07 4.89 4.89 Total: -1.00 -32.00 324.25 -7.00 -38.99 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -4.80 Total: 18.60 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -1.46 Total: 2.69 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.16 Total: -55.27 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.76 Total: -26.26 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.00 -7.00 -38.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331771669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.624 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds