Wall clock time and date at job start Mon Mar 30 2020 01:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 13 13 O 1.42900 * 109.47466 * 294.99832 * 12 10 9 14 14 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 15 15 N 1.46500 * 109.47361 * 304.99744 * 14 10 9 16 16 C 1.34770 * 120.00423 * 180.02562 * 15 14 10 17 17 O 1.21287 * 120.00246 * 359.97438 * 16 15 14 18 18 C 1.50704 * 120.00338 * 180.02562 * 16 15 14 19 19 H 1.08996 * 115.50664 * 325.58793 * 18 16 15 20 20 C 1.53000 * 117.43237 * 110.95339 * 18 16 15 21 21 H 1.09001 * 119.80838 * 355.36949 * 20 18 16 22 22 C 1.54540 * 118.02856 * 198.16930 * 20 18 16 23 23 O 1.44423 * 104.72935 * 273.04727 * 22 20 18 24 24 C 1.44417 * 105.27802 * 40.52574 * 23 22 20 25 25 C 1.52996 * 117.43438 * 180.21258 * 18 16 15 26 26 H 1.08998 * 119.81125 * 5.64943 * 25 18 16 27 27 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 29 29 H 1.08997 * 109.47191 * 55.00866 * 12 10 9 30 30 H 1.09004 * 109.46584 * 175.00049 * 12 10 9 31 31 H 0.96700 * 113.99900 * 180.02562 * 13 12 10 32 32 H 1.09005 * 109.47349 * 64.99828 * 14 10 9 33 33 H 1.09002 * 109.47351 * 184.99998 * 14 10 9 34 34 H 0.96998 * 119.99598 * 0.02562 * 15 14 10 35 35 H 1.09000 * 110.39392 * 154.23806 * 22 20 18 36 36 H 1.09006 * 110.51036 * 31.90553 * 22 20 18 37 37 H 1.08998 * 110.37508 * 200.66015 * 24 23 22 38 38 H 1.08999 * 110.37541 * 78.32171 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5536 0.5765 12 6 2.4217 -4.0280 -1.4525 13 8 1.2275 -4.2770 -2.1967 14 6 1.1807 -4.7552 0.5904 15 7 0.7342 -4.3456 1.9242 16 6 -0.0548 -5.1616 2.6508 17 8 -0.3956 -6.2349 2.2004 18 6 -0.5146 -4.7400 4.0227 19 1 0.1984 -4.1467 4.5950 20 6 -2.0004 -4.4213 4.2010 21 1 -2.6642 -4.4307 3.3365 22 6 -2.4226 -3.5950 5.4368 23 8 -2.6168 -4.5718 6.4828 24 6 -1.5376 -5.5183 6.3247 25 6 -1.4044 -5.7136 4.7981 26 1 -1.6044 -6.7054 4.3924 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0068 29 1 2.9714 -3.2065 -1.9118 30 1 3.0422 -4.9242 -1.4507 31 1 1.3826 -4.5188 -3.1200 32 1 0.3131 -4.9198 -0.0486 33 1 1.7556 -5.6782 0.6673 34 1 1.0064 -3.4871 2.2843 35 1 -3.3524 -3.0621 5.2378 36 1 -1.6358 -2.8934 5.7142 37 1 -1.7874 -6.4629 6.8077 38 1 -0.6137 -5.1129 6.7373 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331771669.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:49 Heat of formation + Delta-G solvation = -112.008252 kcal Electronic energy + Delta-G solvation = -20867.668933 eV Core-core repulsion = 17517.537727 eV Total energy + Delta-G solvation = -3350.131206 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.74236 -40.13374 -38.59310 -36.42699 -35.58324 -35.19467 -33.13873 -30.21551 -29.69244 -27.82754 -26.04898 -25.53002 -23.09018 -21.70648 -21.66129 -20.99254 -19.45413 -18.57754 -18.17111 -17.39945 -17.01644 -16.57394 -16.45409 -16.09006 -15.93769 -15.54826 -15.23463 -14.90540 -14.56225 -14.44060 -14.06934 -13.68256 -13.52381 -13.04630 -12.86004 -12.73268 -12.67018 -12.56322 -12.24354 -11.90300 -11.73057 -11.46297 -11.33828 -11.06677 -10.86657 -10.73014 -10.66276 -10.04884 -9.00738 -7.89724 -5.19086 1.34212 1.50895 1.51824 1.59757 2.07590 2.54961 2.58258 3.02756 3.40040 3.45553 3.54087 3.60841 3.75913 3.85872 3.89805 4.00704 4.07406 4.13264 4.39492 4.43085 4.55342 4.59636 4.67425 4.75264 4.80397 4.86610 4.95511 4.99228 5.05178 5.21519 5.46666 5.55760 5.69911 6.28915 6.54648 7.05403 7.18543 7.37326 8.09020 8.34649 9.33062 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.015799 B = 0.005127 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.860737 B = 5460.404171 C = 6842.989752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.069 4.069 3 Si 0.968 3.032 4 H -0.295 1.295 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.237 4.237 8 H 0.082 0.918 9 N -0.722 5.722 10 C 0.161 3.839 11 H 0.081 0.919 12 C 0.064 3.936 13 O -0.585 6.585 14 C 0.129 3.871 15 N -0.704 5.704 16 C 0.537 3.463 17 O -0.586 6.586 18 C -0.148 4.148 19 H 0.146 0.854 20 C -0.172 4.172 21 H 0.112 0.888 22 C 0.077 3.923 23 O -0.389 6.389 24 C 0.076 3.924 25 C -0.157 4.157 26 H 0.122 0.878 27 H 0.248 0.752 28 H 0.372 0.628 29 H 0.037 0.963 30 H 0.066 0.934 31 H 0.385 0.615 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.412 0.588 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.459 -9.806 8.738 13.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.262 4.262 3 Si 0.798 3.202 4 H -0.223 1.223 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.369 4.369 8 H 0.100 0.900 9 N -0.362 5.362 10 C 0.052 3.948 11 H 0.099 0.901 12 C -0.017 4.017 13 O -0.392 6.392 14 C 0.005 3.995 15 N -0.353 5.353 16 C 0.324 3.676 17 O -0.467 6.467 18 C -0.169 4.169 19 H 0.164 0.836 20 C -0.191 4.191 21 H 0.131 0.869 22 C 0.001 3.999 23 O -0.308 6.308 24 C 0.000 4.000 25 C -0.176 4.176 26 H 0.140 0.860 27 H 0.057 0.943 28 H 0.204 0.796 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.233 0.767 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.249 0.751 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.136 0.864 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.948 -10.289 9.168 13.918 hybrid contribution 0.447 1.305 -1.264 1.871 sum 2.395 -8.984 7.904 12.204 Atomic orbital electron populations 1.69839 1.06662 1.25791 1.59357 1.25467 0.96108 1.00774 1.03842 0.85229 0.77925 0.80049 0.77017 1.22253 1.22732 1.19017 1.19614 0.91495 0.84814 1.40981 0.90047 1.42474 1.05349 1.00194 1.88184 1.20854 0.95134 0.85291 0.93532 0.90091 1.22892 0.86523 0.98645 0.93655 1.86522 1.32940 1.92266 1.27424 1.21397 0.98420 0.97273 0.82452 1.45905 1.50305 1.21672 1.17459 1.19946 0.77612 0.83587 0.86447 1.90645 1.58410 1.24525 1.73165 1.22371 0.95373 1.04607 0.94512 0.83591 1.24178 0.93644 0.99587 1.01701 0.86944 1.23031 1.03175 0.90517 0.83203 1.89160 1.50008 1.39281 1.52338 1.23107 0.91148 0.94651 0.91114 1.24186 1.02198 0.95633 0.95547 0.85962 0.94268 0.79608 0.94469 0.91615 0.76668 0.93305 0.90359 0.75124 0.87156 0.90154 0.86350 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.03 13.06 21.65 0.28 -56.75 16 2 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.97 43.85 29.55 68.60 2.03 45.88 16 4 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.24 -12.06 9.93 84.04 0.83 -11.22 16 8 H 0.08 3.89 7.83 -2.91 -0.02 3.86 16 9 N -0.72 -33.52 4.51 -322.93 -1.46 -34.98 16 10 C 0.16 5.78 2.84 44.99 0.13 5.91 16 11 H 0.08 2.68 8.08 -2.39 -0.02 2.66 16 12 C 0.06 2.04 6.86 71.98 0.49 2.53 16 13 O -0.58 -20.08 12.64 -148.98 -1.88 -21.96 16 14 C 0.13 4.46 5.12 86.38 0.44 4.90 16 15 N -0.70 -23.38 5.39 -463.06 -2.49 -25.87 16 16 C 0.54 17.85 7.61 87.66 0.67 18.52 16 17 O -0.59 -23.26 16.34 -3.05 -0.05 -23.31 16 18 C -0.15 -3.79 5.74 -11.54 -0.07 -3.86 16 19 H 0.15 3.02 8.14 -2.39 -0.02 3.00 16 20 C -0.17 -4.36 6.91 -9.82 -0.07 -4.43 16 21 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 22 C 0.08 1.65 7.44 72.51 0.54 2.19 16 23 O -0.39 -8.94 11.65 -148.98 -1.74 -10.68 16 24 C 0.08 1.40 7.44 72.49 0.54 1.94 16 25 C -0.16 -3.67 6.64 -9.84 -0.07 -3.74 16 26 H 0.12 3.15 7.82 -2.39 -0.02 3.13 16 27 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 28 H 0.37 19.71 7.80 -92.71 -0.72 18.99 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.39 9.23 9.12 -74.06 -0.68 8.55 16 32 H 0.05 1.97 7.39 -2.38 -0.02 1.95 16 33 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 34 H 0.41 13.58 8.14 -92.71 -0.75 12.83 16 35 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -68.58 324.25 -2.45 -71.03 By element: Atomic # 1 Polarization: 48.23 SS G_CDS: -1.06 Total: 47.18 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 3.91 Total: 9.46 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -3.67 Total: -117.60 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -3.67 Total: -55.95 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -68.58 -2.45 -71.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331771669.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.974 kcal (2) G-P(sol) polarization free energy of solvation -68.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds