Wall clock time and date at job start Mon Mar 30 2020 01:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47263 * 2 1 4 4 C 1.52998 * 109.46952 * 120.00040 * 2 1 3 5 5 O 1.42901 * 109.46663 * 176.60860 * 4 2 1 6 6 C 1.35584 * 116.99912 * 175.60386 * 5 4 2 7 7 C 1.38963 * 119.87890 * 5.37305 * 6 5 4 8 8 C 1.36252 * 121.87337 * 179.68062 * 7 6 5 9 9 C 1.40849 * 121.04221 * 0.62211 * 8 7 6 10 10 C 1.40413 * 121.10726 * 179.69648 * 9 8 7 11 11 C 1.36380 * 119.80095 * 179.97438 * 10 9 8 12 12 C 1.39053 * 120.93791 * 0.02562 * 11 10 9 13 13 C 1.37688 * 120.67555 * 359.93177 * 12 11 10 14 14 C 1.39538 * 119.55031 * 0.09118 * 13 12 11 15 15 C 1.41143 * 119.88720 * 185.64662 * 6 5 4 16 16 C 1.40276 * 120.81221 * 359.97438 * 15 6 5 17 17 H 1.07997 * 119.99733 * 140.58365 * 16 15 6 18 18 C 1.40084 * 120.00266 * 320.59090 * 16 15 6 19 19 N 1.30813 * 120.00459 * 155.08909 * 18 16 15 20 20 Si 1.86808 * 119.99894 * 335.08407 * 18 16 15 21 21 H 1.48505 * 109.46753 * 95.34252 * 20 18 16 22 22 H 1.48498 * 109.47168 * 215.34463 * 20 18 16 23 23 H 1.48500 * 109.46961 * 335.34550 * 20 18 16 24 24 H 1.09005 * 109.47229 * 300.00071 * 1 2 3 25 25 H 1.09006 * 109.46972 * 59.99495 * 1 2 3 26 26 H 1.08999 * 109.47575 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46832 * 240.00582 * 2 1 3 28 28 H 1.08992 * 109.47083 * 184.98080 * 3 2 1 29 29 H 1.09003 * 109.46949 * 304.98342 * 3 2 1 30 30 H 1.09003 * 109.46590 * 64.98145 * 3 2 1 31 31 H 1.08995 * 109.47288 * 296.60833 * 4 2 1 32 32 H 1.08997 * 109.46813 * 56.61289 * 4 2 1 33 33 H 1.08000 * 119.06566 * 0.02562 * 7 6 5 34 34 H 1.07999 * 119.47853 * 180.27043 * 8 7 6 35 35 H 1.07998 * 120.10451 * 359.97438 * 10 9 8 36 36 H 1.08000 * 119.53558 * 180.02562 * 11 10 9 37 37 H 1.08004 * 119.66148 * 179.97438 * 12 11 10 38 38 H 1.08002 * 120.22337 * 180.02562 * 13 12 11 39 39 H 0.97003 * 120.00082 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 3.4667 -0.7906 1.2100 6 6 4.0872 -1.3211 2.2926 7 6 3.3331 -1.8683 3.3236 8 6 3.9143 -2.4177 4.4267 9 6 5.3148 -2.4420 4.5739 10 6 5.9150 -3.0022 5.7130 11 6 7.2739 -3.0119 5.8278 12 6 8.0794 -2.4731 4.8306 13 6 7.5218 -1.9173 3.7010 14 6 6.1339 -1.8939 3.5587 15 6 5.4964 -1.3105 2.3710 16 6 6.2692 -0.7566 1.3396 17 1 7.1503 -0.1785 1.5759 18 6 5.8982 -0.9533 0.0032 19 7 6.2713 -0.0965 -0.9122 20 14 4.8706 -2.4392 -0.4719 21 1 3.4358 -2.0579 -0.5073 22 1 5.2880 -2.9214 -1.8129 23 1 5.0711 -3.5195 0.5271 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1263 1.4438 -0.0892 29 1 1.6056 1.9815 -0.8420 30 1 1.7514 1.9299 0.9313 31 1 1.7271 -0.1736 2.1382 32 1 1.6278 -1.7298 1.2800 33 1 2.2559 -1.8629 3.2459 34 1 3.2910 -2.8362 5.2031 35 1 5.3024 -3.4240 6.4960 36 1 7.7310 -3.4443 6.7056 37 1 9.1534 -2.4915 4.9429 38 1 8.1544 -1.5012 2.9308 39 1 6.0146 -0.2329 -1.8376 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003133986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:26 Heat of formation + Delta-G solvation = -15.091531 kcal Electronic energy + Delta-G solvation = -20757.134897 eV Core-core repulsion = 17822.055579 eV Total energy + Delta-G solvation = -2935.079318 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.28429 -37.97265 -35.41974 -33.92029 -33.66701 -31.54508 -28.89108 -28.54258 -26.89310 -26.01867 -24.84969 -22.27252 -21.43737 -20.45971 -19.82162 -17.61962 -17.27774 -16.21405 -15.78561 -15.30357 -14.71074 -14.56321 -13.85357 -13.76043 -13.26130 -13.19517 -12.73404 -12.60717 -12.29318 -12.20797 -12.04858 -11.97087 -11.65332 -11.35850 -11.12312 -10.91405 -10.78154 -10.71060 -10.41157 -10.19224 -10.11095 -9.98604 -9.49757 -9.35591 -8.98983 -8.50839 -7.32784 -7.06953 -6.76277 -4.35195 1.64679 2.18257 2.96125 3.18734 3.27825 3.38856 4.00079 4.06535 4.35225 4.66407 5.12590 5.16954 5.36723 5.44341 5.64110 5.73155 5.75244 5.78848 5.81657 5.87564 6.00793 6.05751 6.10878 6.16852 6.21300 6.28361 6.29569 6.47343 6.49603 6.58871 6.74094 6.84512 6.97291 7.09394 7.20097 7.28919 7.42276 7.56909 7.66973 7.83433 8.02075 8.19939 8.28296 8.57988 8.90348 9.91037 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.019863 B = 0.007425 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.314970 B = 3770.005279 C = 4628.887999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.142 4.142 4 C 0.068 3.932 5 O -0.296 6.296 6 C -0.051 4.051 7 C -0.110 4.110 8 C -0.244 4.244 9 C -0.012 4.012 10 C -0.149 4.149 11 C -0.116 4.116 12 C -0.185 4.185 13 C -0.064 4.064 14 C -0.091 4.091 15 C 0.087 3.913 16 C -0.413 4.413 17 H 0.097 0.903 18 C 0.105 3.895 19 N -0.782 5.782 20 Si 0.917 3.083 21 H -0.241 1.241 22 H -0.297 1.297 23 H -0.258 1.258 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.173 -1.383 1.790 6.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 C -0.199 4.199 4 C -0.008 4.008 5 O -0.212 6.212 6 C -0.095 4.095 7 C -0.130 4.130 8 C -0.263 4.263 9 C -0.012 4.012 10 C -0.167 4.167 11 C -0.134 4.134 12 C -0.204 4.204 13 C -0.082 4.082 14 C -0.092 4.092 15 C 0.084 3.916 16 C -0.438 4.438 17 H 0.115 0.885 18 C -0.118 4.118 19 N -0.403 5.403 20 Si 0.743 3.257 21 H -0.165 1.165 22 H -0.225 1.225 23 H -0.182 1.182 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.139 0.861 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.028 -1.157 1.351 6.285 hybrid contribution -0.649 -0.628 -0.044 0.904 sum -6.677 -1.785 1.306 7.034 Atomic orbital electron populations 1.21771 0.94860 1.01558 1.01816 1.21138 0.94832 0.97286 0.98221 1.21757 1.02854 0.94649 1.00672 1.22492 0.82228 0.98557 0.97490 1.86067 1.17914 1.79907 1.37275 1.18665 0.91533 1.08719 0.90575 1.20347 0.97731 0.99879 0.94999 1.19826 0.92847 1.13433 1.00193 1.17806 0.93368 0.96624 0.93373 1.20730 0.94542 1.03388 0.98067 1.20519 0.93895 1.00612 0.98344 1.20743 0.98498 1.05288 0.95849 1.21075 0.94164 0.96404 0.96570 1.18968 0.92677 1.01602 0.95968 1.18015 0.88575 0.92476 0.92568 1.19191 1.09840 1.25278 0.89503 0.88508 1.26136 0.92806 0.96957 0.95930 1.69731 1.35515 1.31407 1.03668 0.86198 0.81887 0.80706 0.76868 1.16541 1.22481 1.18210 0.92649 0.92331 0.92831 0.90576 0.91016 0.93411 0.93148 0.93359 0.93939 0.88544 0.88558 0.87586 0.87952 0.87655 0.86087 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.19 37.16 0.34 -1.40 16 2 C -0.10 -1.53 3.13 -90.62 -0.28 -1.81 16 3 C -0.14 -2.26 9.02 37.16 0.34 -1.92 16 4 C 0.07 1.25 3.59 37.16 0.13 1.38 16 5 O -0.30 -6.70 4.87 -18.45 -0.09 -6.79 16 6 C -0.05 -1.23 5.28 -38.21 -0.20 -1.43 16 7 C -0.11 -2.42 8.89 -40.03 -0.36 -2.78 16 8 C -0.24 -5.28 9.70 -39.31 -0.38 -5.66 16 9 C -0.01 -0.26 5.74 -106.85 -0.61 -0.87 16 10 C -0.15 -2.92 9.76 -39.43 -0.38 -3.31 16 11 C -0.12 -2.11 9.95 -39.95 -0.40 -2.51 16 12 C -0.19 -3.53 10.02 -39.48 -0.40 -3.93 16 13 C -0.06 -1.39 9.47 -39.30 -0.37 -1.76 16 14 C -0.09 -2.19 5.90 -104.67 -0.62 -2.81 16 15 C 0.09 2.21 4.92 -104.53 -0.51 1.70 16 16 C -0.41 -10.78 8.50 -38.12 -0.32 -11.10 16 17 H 0.10 2.60 7.46 -52.49 -0.39 2.21 16 18 C 0.11 2.66 4.78 -17.29 -0.08 2.58 16 19 N -0.78 -19.85 13.93 55.56 0.77 -19.08 16 20 Si 0.92 21.12 24.85 -169.99 -4.22 16.90 16 21 H -0.24 -5.28 4.92 56.52 0.28 -5.00 16 22 H -0.30 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 1.29 7.47 -51.93 -0.39 0.90 16 28 H 0.07 1.36 7.91 -51.93 -0.41 0.95 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.84 7.63 -51.93 -0.40 0.44 16 32 H 0.04 0.74 7.66 -51.93 -0.40 0.35 16 33 H 0.10 1.86 6.20 -52.49 -0.33 1.53 16 34 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.10 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 38 H 0.12 2.56 6.95 -52.49 -0.36 2.19 16 39 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 LS Contribution 313.16 15.07 4.72 4.72 Total: -1.00 -27.06 313.16 -8.67 -35.74 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.74 Total: 4.14 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: -4.12 Total: -35.63 kcal Atomic # 7 Polarization: -19.85 SS G_CDS: 0.77 Total: -19.08 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.09 Total: -6.79 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.22 Total: 16.90 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.06 -8.67 -35.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003133986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.644 kcal (2) G-P(sol) polarization free energy of solvation -27.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds