Wall clock time and date at job start Mon Mar 30 2020 01:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47263 * 2 1 4 4 C 1.52998 * 109.46952 * 120.00040 * 2 1 3 5 5 O 1.42901 * 109.46663 * 176.60860 * 4 2 1 6 6 C 1.35584 * 116.99912 * 175.60386 * 5 4 2 7 7 C 1.38963 * 119.87890 * 5.37305 * 6 5 4 8 8 C 1.36252 * 121.87337 * 179.68062 * 7 6 5 9 9 C 1.40849 * 121.04221 * 0.62211 * 8 7 6 10 10 C 1.40413 * 121.10726 * 179.69648 * 9 8 7 11 11 C 1.36380 * 119.80095 * 179.97438 * 10 9 8 12 12 C 1.39053 * 120.93791 * 0.02562 * 11 10 9 13 13 C 1.37688 * 120.67555 * 359.93177 * 12 11 10 14 14 C 1.39538 * 119.55031 * 0.09118 * 13 12 11 15 15 C 1.41143 * 119.88720 * 185.64662 * 6 5 4 16 16 C 1.40276 * 120.81221 * 359.97438 * 15 6 5 17 17 H 1.07997 * 119.99733 * 140.58365 * 16 15 6 18 18 C 1.40084 * 120.00266 * 320.59090 * 16 15 6 19 19 N 1.30813 * 120.00459 * 155.08909 * 18 16 15 20 20 Si 1.86808 * 119.99894 * 335.08407 * 18 16 15 21 21 H 1.48505 * 109.46753 * 95.34252 * 20 18 16 22 22 H 1.48498 * 109.47168 * 215.34463 * 20 18 16 23 23 H 1.48500 * 109.46961 * 335.34550 * 20 18 16 24 24 H 1.09005 * 109.47229 * 300.00071 * 1 2 3 25 25 H 1.09006 * 109.46972 * 59.99495 * 1 2 3 26 26 H 1.08999 * 109.47575 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46832 * 240.00582 * 2 1 3 28 28 H 1.08992 * 109.47083 * 184.98080 * 3 2 1 29 29 H 1.09003 * 109.46949 * 304.98342 * 3 2 1 30 30 H 1.09003 * 109.46590 * 64.98145 * 3 2 1 31 31 H 1.08995 * 109.47288 * 296.60833 * 4 2 1 32 32 H 1.08997 * 109.46813 * 56.61289 * 4 2 1 33 33 H 1.08000 * 119.06566 * 0.02562 * 7 6 5 34 34 H 1.07999 * 119.47853 * 180.27043 * 8 7 6 35 35 H 1.07998 * 120.10451 * 359.97438 * 10 9 8 36 36 H 1.08000 * 119.53558 * 180.02562 * 11 10 9 37 37 H 1.08004 * 119.66148 * 179.97438 * 12 11 10 38 38 H 1.08002 * 120.22337 * 180.02562 * 13 12 11 39 39 H 0.97003 * 120.00082 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 3.4667 -0.7906 1.2100 6 6 4.0872 -1.3211 2.2926 7 6 3.3331 -1.8683 3.3236 8 6 3.9143 -2.4177 4.4267 9 6 5.3148 -2.4420 4.5739 10 6 5.9150 -3.0022 5.7130 11 6 7.2739 -3.0119 5.8278 12 6 8.0794 -2.4731 4.8306 13 6 7.5218 -1.9173 3.7010 14 6 6.1339 -1.8939 3.5587 15 6 5.4964 -1.3105 2.3710 16 6 6.2692 -0.7566 1.3396 17 1 7.1503 -0.1785 1.5759 18 6 5.8982 -0.9533 0.0032 19 7 6.2713 -0.0965 -0.9122 20 14 4.8706 -2.4392 -0.4719 21 1 3.4358 -2.0579 -0.5073 22 1 5.2880 -2.9214 -1.8129 23 1 5.0711 -3.5195 0.5271 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1263 1.4438 -0.0892 29 1 1.6056 1.9815 -0.8420 30 1 1.7514 1.9299 0.9313 31 1 1.7271 -0.1736 2.1382 32 1 1.6278 -1.7298 1.2800 33 1 2.2559 -1.8629 3.2459 34 1 3.2910 -2.8362 5.2031 35 1 5.3024 -3.4240 6.4960 36 1 7.7310 -3.4443 6.7056 37 1 9.1534 -2.4915 4.9429 38 1 8.1544 -1.5012 2.9308 39 1 6.0146 -0.2329 -1.8376 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003133986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:26 Heat of formation + Delta-G solvation = -27.873799 kcal Electronic energy + Delta-G solvation = -20757.689178 eV Core-core repulsion = 17822.055579 eV Total energy + Delta-G solvation = -2935.633599 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.96745 -39.57008 -36.85878 -35.58602 -35.31257 -33.26937 -30.56728 -30.18508 -28.04146 -27.48860 -26.56782 -23.91927 -23.07222 -22.13535 -21.19881 -19.36760 -18.91683 -17.90938 -17.34071 -16.90628 -16.40323 -16.11544 -15.34477 -15.12843 -14.97720 -14.85357 -14.25243 -14.14537 -13.87120 -13.71574 -13.59118 -13.34231 -13.10406 -13.03401 -12.70610 -12.44933 -12.27760 -12.02190 -11.93923 -11.75803 -11.67006 -11.57432 -11.16916 -11.04190 -10.73470 -10.20400 -9.00135 -8.90346 -8.49763 -6.23446 -0.03903 0.50255 1.18233 1.33695 1.42278 1.55676 2.23192 2.31317 2.76600 2.90465 3.60520 3.87249 3.93266 4.10473 4.17754 4.27029 4.29767 4.41199 4.52777 4.54417 4.60937 4.67385 4.71198 4.77548 4.82414 4.85716 4.96337 5.01918 5.17104 5.18291 5.30091 5.38280 5.40115 5.43706 5.58006 5.60117 5.75860 5.85231 5.95552 6.05283 6.29166 6.45488 6.53946 6.74817 7.19134 8.14802 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.019863 B = 0.007425 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.314970 B = 3770.005279 C = 4628.887999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.096 4.096 3 C -0.137 4.137 4 C 0.057 3.943 5 O -0.316 6.316 6 C -0.053 4.053 7 C -0.129 4.129 8 C -0.215 4.215 9 C -0.050 4.050 10 C -0.137 4.137 11 C -0.116 4.116 12 C -0.161 4.161 13 C -0.099 4.099 14 C -0.112 4.112 15 C 0.056 3.944 16 C -0.458 4.458 17 H 0.063 0.937 18 C 0.083 3.917 19 N -0.826 5.826 20 Si 0.957 3.043 21 H -0.226 1.226 22 H -0.287 1.287 23 H -0.283 1.283 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.138 0.862 38 H 0.108 0.892 39 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.304 -3.180 4.729 10.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.115 4.115 3 C -0.195 4.195 4 C -0.018 4.018 5 O -0.232 6.232 6 C -0.097 4.097 7 C -0.147 4.147 8 C -0.234 4.234 9 C -0.050 4.050 10 C -0.155 4.155 11 C -0.134 4.134 12 C -0.179 4.179 13 C -0.118 4.118 14 C -0.113 4.113 15 C 0.053 3.947 16 C -0.486 4.486 17 H 0.081 0.919 18 C -0.135 4.135 19 N -0.451 5.451 20 Si 0.782 3.218 21 H -0.150 1.150 22 H -0.215 1.215 23 H -0.208 1.208 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.160 0.840 36 H 0.167 0.833 37 H 0.156 0.844 38 H 0.126 0.874 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.174 -2.952 4.292 9.693 hybrid contribution 0.005 -0.214 -0.503 0.546 sum -8.169 -3.166 3.790 9.545 Atomic orbital electron populations 1.21720 0.91407 1.02725 1.03260 1.21200 0.97526 0.96363 0.96396 1.21700 1.00157 0.95528 1.02082 1.22861 0.80077 0.99683 0.99214 1.86062 1.20349 1.79689 1.37136 1.18948 0.91471 1.08058 0.91228 1.20697 0.99305 1.00121 0.94611 1.20414 0.93052 1.09891 1.00054 1.18228 0.94008 0.98268 0.94497 1.21172 0.95676 1.01395 0.97257 1.21030 0.93532 0.99549 0.99278 1.21230 1.00539 1.01867 0.94237 1.21171 0.93722 0.98769 0.98095 1.19340 0.93978 1.01758 0.96178 1.18280 0.89622 0.93526 0.93257 1.18955 1.10287 1.28635 0.90682 0.91921 1.26488 0.93417 0.97998 0.95602 1.69749 1.38483 1.32806 1.04054 0.85646 0.81966 0.78082 0.76105 1.15007 1.21489 1.20828 0.91490 0.90635 0.91818 0.92100 0.95255 0.91069 0.92413 0.92345 0.92865 0.85544 0.84927 0.83979 0.83332 0.84395 0.87423 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.19 71.98 0.66 -2.21 16 2 C -0.10 -2.96 3.13 -10.79 -0.03 -2.99 16 3 C -0.14 -4.37 9.02 71.98 0.65 -3.72 16 4 C 0.06 2.02 3.59 71.98 0.26 2.28 16 5 O -0.32 -14.64 4.87 -88.93 -0.43 -15.07 16 6 C -0.05 -2.57 5.28 23.16 0.12 -2.45 16 7 C -0.13 -5.40 8.89 21.98 0.20 -5.21 16 8 C -0.22 -8.61 9.70 22.45 0.22 -8.39 16 9 C -0.05 -2.14 5.74 -21.31 -0.12 -2.26 16 10 C -0.14 -4.73 9.76 22.37 0.22 -4.51 16 11 C -0.12 -3.67 9.95 22.03 0.22 -3.45 16 12 C -0.16 -5.69 10.02 22.34 0.22 -5.47 16 13 C -0.10 -4.41 9.47 22.45 0.21 -4.19 16 14 C -0.11 -5.46 5.90 -19.90 -0.12 -5.57 16 15 C 0.06 2.99 4.92 -19.80 -0.10 2.90 16 16 C -0.46 -26.14 8.50 23.21 0.20 -25.94 16 17 H 0.06 3.80 7.46 -2.91 -0.02 3.78 16 18 C 0.08 4.55 4.78 85.29 0.41 4.95 16 19 N -0.83 -45.50 13.93 21.86 0.30 -45.19 16 20 Si 0.96 45.58 24.85 68.60 1.70 47.29 16 21 H -0.23 -10.01 4.92 99.48 0.49 -9.52 16 22 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.28 -14.38 7.11 99.48 0.71 -13.67 16 24 H 0.07 1.29 8.14 -2.38 -0.02 1.28 16 25 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 2.05 7.47 -2.39 -0.02 2.03 16 28 H 0.03 1.16 7.91 -2.39 -0.02 1.14 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.93 7.63 -2.39 -0.02 1.91 16 32 H 0.05 1.76 7.66 -2.39 -0.02 1.74 16 33 H 0.13 4.46 6.20 -2.91 -0.02 4.44 16 34 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 35 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 36 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 37 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.11 4.94 6.95 -2.91 -0.02 4.92 16 39 H 0.29 14.59 8.30 -92.71 -0.77 13.83 16 Total: -1.00 -63.55 313.16 5.60 -57.95 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.81 Total: 21.27 kcal Atomic # 6 Polarization: -69.45 SS G_CDS: 3.21 Total: -66.24 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.30 Total: -45.19 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.43 Total: -15.07 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.70 Total: 47.29 kcal Total: -63.55 5.60 -57.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003133986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.073 kcal (2) G-P(sol) polarization free energy of solvation -63.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds