Wall clock time and date at job start Mon Mar 30 2020 00:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 110.28772 * 2 1 4 4 O 1.20821 * 119.99523 * 119.32663 * 3 2 1 5 5 O 1.34225 * 119.99913 * 299.32626 * 3 2 1 6 6 C 1.54259 * 110.32406 * 237.87429 * 2 1 3 7 7 C 1.54381 * 105.06357 * 241.00143 * 6 2 1 8 8 N 1.48566 * 104.58899 * 23.85189 * 7 6 2 9 9 C 1.46901 * 110.99681 * 200.96060 * 8 7 6 10 10 C 1.50700 * 109.47280 * 176.49484 * 9 8 7 11 11 O 1.21277 * 119.99747 * 6.05339 * 10 9 8 12 12 N 1.34774 * 119.99969 * 186.06443 * 10 9 8 13 13 C 1.46498 * 119.99897 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47409 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99618 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00429 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99378 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00045 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47276 * 60.00245 * 18 16 14 20 20 H 1.48504 * 109.46565 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46916 * 299.99515 * 18 16 14 22 22 C 1.48558 * 104.22341 * 320.51620 * 8 7 6 23 23 H 1.09001 * 109.47250 * 59.29754 * 1 2 3 24 24 H 1.09000 * 109.46857 * 179.30088 * 1 2 3 25 25 H 1.09001 * 109.46844 * 299.29680 * 1 2 3 26 26 H 0.96703 * 116.99790 * 179.97438 * 5 3 2 27 27 H 1.09007 * 110.32151 * 359.89722 * 6 2 1 28 28 H 1.08997 * 110.32389 * 122.10523 * 6 2 1 29 29 H 1.09000 * 110.41472 * 142.62563 * 7 6 2 30 30 H 1.08998 * 110.41060 * 265.07808 * 7 6 2 31 31 H 1.09007 * 109.47130 * 296.49406 * 9 8 7 32 32 H 1.08997 * 109.47434 * 56.49012 * 9 8 7 33 33 H 0.96999 * 120.00237 * 359.97438 * 12 10 9 34 34 H 1.08998 * 109.47338 * 299.99783 * 13 12 10 35 35 H 1.09000 * 109.47352 * 59.99495 * 13 12 10 36 36 H 0.97001 * 119.99161 * 179.97438 * 17 16 14 37 37 H 1.09002 * 110.41392 * 280.70432 * 22 8 7 38 38 H 1.09006 * 110.41206 * 158.26653 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0526 1.4136 0.0000 4 8 2.7427 1.8024 0.9123 5 8 1.7512 2.2405 -1.0135 6 6 2.0658 -0.7692 -1.2251 7 6 2.8829 -1.9401 -0.6377 8 7 2.3184 -2.1458 0.7210 9 6 3.2704 -2.8575 1.5843 10 6 2.6997 -2.9717 2.9744 11 8 1.5651 -2.6052 3.1960 12 7 3.4504 -3.4808 3.9712 13 6 2.8958 -3.5912 5.3227 14 6 3.9297 -4.1876 6.2428 15 1 4.9027 -4.4569 5.8593 16 6 3.6338 -4.3883 7.5744 17 7 2.4491 -4.0598 8.0415 18 14 4.9157 -5.1268 8.7150 19 1 6.1162 -4.2533 8.7420 20 1 4.3534 -5.2388 10.0849 21 1 5.2959 -6.4760 8.2247 22 6 2.0684 -0.7707 1.2245 23 1 -0.3634 0.5247 -0.8836 24 1 -0.3633 -1.0276 -0.0125 25 1 -0.3633 0.5029 0.8962 26 1 2.1090 3.1378 -0.9691 27 1 1.2387 -1.1484 -1.8254 28 1 2.7067 -0.1245 -1.8263 29 1 2.7519 -2.8367 -1.2435 30 1 3.9379 -1.6734 -0.5747 31 1 3.4501 -3.8547 1.1823 32 1 4.2098 -2.3061 1.6213 33 1 4.3578 -3.7741 3.7939 34 1 2.6164 -2.6011 5.6828 35 1 2.0147 -4.2325 5.3026 36 1 2.2408 -4.2013 8.9782 37 1 2.9960 -0.3211 1.5789 38 1 1.3242 -0.7868 2.0209 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062936308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:22 Heat of formation + Delta-G solvation = -126.194030 kcal Electronic energy + Delta-G solvation = -20924.625407 eV Core-core repulsion = 17573.879059 eV Total energy + Delta-G solvation = -3350.746347 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.98622 -39.27722 -37.91352 -36.29214 -34.19389 -33.58015 -32.29404 -30.05570 -28.12078 -26.66773 -25.61480 -23.79983 -22.42656 -21.35744 -19.96373 -19.54755 -18.00377 -17.15026 -16.88685 -16.23314 -15.59713 -15.38467 -15.25000 -14.74258 -14.54096 -14.14499 -13.82081 -13.53744 -13.14490 -12.88516 -12.54720 -12.23612 -12.16423 -11.93859 -11.87042 -11.73166 -11.62344 -11.16904 -11.11045 -10.97426 -10.90382 -10.81112 -10.45022 -10.29680 -9.39558 -9.00703 -8.71450 -8.43644 -7.84466 -6.14986 -4.21941 2.01691 2.74959 3.26387 3.31037 3.32546 3.39292 3.75967 4.18722 4.26338 4.36112 4.51487 4.66243 5.04491 5.11127 5.14991 5.20957 5.33031 5.39212 5.47701 5.53895 5.61780 5.69844 5.74652 5.81195 5.83113 6.10525 6.19660 6.29015 6.75631 6.85737 7.33697 7.46595 7.54310 7.68645 7.69498 7.99001 8.64846 8.80242 9.13337 9.44647 10.95206 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033677 B = 0.003574 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.234560 B = 7832.956458 C = 8048.624371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.058 4.058 3 C 0.488 3.512 4 O -0.509 6.509 5 O -0.514 6.514 6 C -0.108 4.108 7 C 0.027 3.973 8 N -0.486 5.486 9 C 0.024 3.976 10 C 0.498 3.502 11 O -0.539 6.539 12 N -0.714 5.714 13 C 0.251 3.749 14 C -0.544 4.544 15 H 0.062 0.938 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.046 3.954 23 H 0.065 0.935 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.408 0.592 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.390 0.610 34 H 0.026 0.974 35 H 0.027 0.973 36 H 0.266 0.734 37 H 0.059 0.941 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 7.780 -20.713 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.059 4.059 3 C 0.329 3.671 4 O -0.396 6.396 5 O -0.326 6.326 6 C -0.146 4.146 7 C -0.101 4.101 8 N -0.210 5.210 9 C -0.108 4.108 10 C 0.282 3.718 11 O -0.417 6.417 12 N -0.363 5.363 13 C 0.131 3.869 14 C -0.582 4.582 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.082 4.082 23 H 0.084 0.916 24 H 0.102 0.898 25 H 0.081 0.919 26 H 0.266 0.734 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.064 0.936 31 H 0.122 0.878 32 H 0.078 0.922 33 H 0.222 0.778 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.688 7.410 -20.099 21.433 hybrid contribution 2.227 0.557 0.747 2.414 sum 1.539 7.967 -19.352 20.984 Atomic orbital electron populations 1.21823 0.90336 1.04248 1.02438 1.21271 0.98830 0.87114 0.98719 1.23438 0.76779 0.88292 0.78561 1.90742 1.35978 1.76801 1.36059 1.84532 1.72447 1.27778 1.47833 1.22404 1.00540 0.96049 0.95575 1.23235 0.96813 0.98721 0.91360 1.65251 1.39458 1.15191 1.01083 1.22257 0.94277 1.01075 0.93168 1.20224 0.86582 0.79017 0.85986 1.90632 1.18391 1.49081 1.83617 1.46442 1.16643 1.62090 1.11133 1.19085 0.94734 0.97422 0.75695 1.21196 0.99633 1.43358 0.94062 0.91981 1.24952 0.95693 0.95328 0.98026 1.69970 1.20452 1.46554 1.15299 0.86473 0.81215 0.79602 0.79603 1.20087 1.21063 1.20065 1.23329 1.02485 0.86862 0.95484 0.91623 0.89783 0.91922 0.73384 0.89201 0.90752 0.89250 0.93620 0.87789 0.92244 0.77815 0.95592 0.95495 0.92399 0.92273 0.86838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 8.19 37.16 0.30 -1.07 16 2 C -0.06 -0.67 0.97 -154.28 -0.15 -0.82 16 3 C 0.49 5.82 6.75 36.01 0.24 6.06 16 4 O -0.51 -7.89 16.21 -18.75 -0.30 -8.20 16 5 O -0.51 -4.33 13.33 -39.25 -0.52 -4.85 16 6 C -0.11 -0.99 6.27 -25.35 -0.16 -1.15 16 7 C 0.03 0.27 6.49 -2.18 -0.01 0.26 16 8 N -0.49 -6.84 5.18 -231.40 -1.20 -8.04 16 9 C 0.02 0.35 5.38 -4.97 -0.03 0.32 16 10 C 0.50 9.98 7.48 -10.99 -0.08 9.89 16 11 O -0.54 -12.87 14.43 5.56 0.08 -12.79 16 12 N -0.71 -15.12 5.55 -61.47 -0.34 -15.46 16 13 C 0.25 6.73 5.43 -5.19 -0.03 6.70 16 14 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16 15 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 18 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 C 0.05 0.69 4.45 -2.18 -0.01 0.68 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.41 1.76 9.10 45.56 0.41 2.17 16 27 H 0.09 0.71 7.71 -51.92 -0.40 0.31 16 28 H 0.07 0.60 7.69 -51.93 -0.40 0.20 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.44 7.92 -51.93 -0.41 0.03 16 31 H 0.10 1.27 8.14 -51.92 -0.42 0.85 16 32 H 0.06 0.77 7.98 -51.93 -0.41 0.35 16 33 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.06 0.97 6.75 -51.93 -0.35 0.62 16 38 H 0.11 2.06 6.26 -51.93 -0.32 1.73 16 LS Contribution 319.61 15.07 4.82 4.82 Total: -1.00 -34.64 319.61 -6.81 -41.45 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.72 Total: 5.32 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -0.34 Total: 7.35 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.80 Total: -49.07 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.75 Total: -25.84 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.64 -6.81 -41.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062936308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.743 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds