Wall clock time and date at job start Mon Mar 30 2020 00:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 110.28772 * 2 1 4 4 O 1.20821 * 119.99523 * 119.32663 * 3 2 1 5 5 O 1.34225 * 119.99913 * 299.32626 * 3 2 1 6 6 C 1.54259 * 110.32406 * 237.87429 * 2 1 3 7 7 C 1.54381 * 105.06357 * 241.00143 * 6 2 1 8 8 N 1.48566 * 104.58899 * 23.85189 * 7 6 2 9 9 C 1.46901 * 110.99681 * 200.96060 * 8 7 6 10 10 C 1.50700 * 109.47280 * 176.49484 * 9 8 7 11 11 O 1.21277 * 119.99747 * 6.05339 * 10 9 8 12 12 N 1.34774 * 119.99969 * 186.06443 * 10 9 8 13 13 C 1.46498 * 119.99897 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47409 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99618 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00429 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99378 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00045 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47276 * 60.00245 * 18 16 14 20 20 H 1.48504 * 109.46565 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46916 * 299.99515 * 18 16 14 22 22 C 1.48558 * 104.22341 * 320.51620 * 8 7 6 23 23 H 1.09001 * 109.47250 * 59.29754 * 1 2 3 24 24 H 1.09000 * 109.46857 * 179.30088 * 1 2 3 25 25 H 1.09001 * 109.46844 * 299.29680 * 1 2 3 26 26 H 0.96703 * 116.99790 * 179.97438 * 5 3 2 27 27 H 1.09007 * 110.32151 * 359.89722 * 6 2 1 28 28 H 1.08997 * 110.32389 * 122.10523 * 6 2 1 29 29 H 1.09000 * 110.41472 * 142.62563 * 7 6 2 30 30 H 1.08998 * 110.41060 * 265.07808 * 7 6 2 31 31 H 1.09007 * 109.47130 * 296.49406 * 9 8 7 32 32 H 1.08997 * 109.47434 * 56.49012 * 9 8 7 33 33 H 0.96999 * 120.00237 * 359.97438 * 12 10 9 34 34 H 1.08998 * 109.47338 * 299.99783 * 13 12 10 35 35 H 1.09000 * 109.47352 * 59.99495 * 13 12 10 36 36 H 0.97001 * 119.99161 * 179.97438 * 17 16 14 37 37 H 1.09002 * 110.41392 * 280.70432 * 22 8 7 38 38 H 1.09006 * 110.41206 * 158.26653 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0526 1.4136 0.0000 4 8 2.7427 1.8024 0.9123 5 8 1.7512 2.2405 -1.0135 6 6 2.0658 -0.7692 -1.2251 7 6 2.8829 -1.9401 -0.6377 8 7 2.3184 -2.1458 0.7210 9 6 3.2704 -2.8575 1.5843 10 6 2.6997 -2.9717 2.9744 11 8 1.5651 -2.6052 3.1960 12 7 3.4504 -3.4808 3.9712 13 6 2.8958 -3.5912 5.3227 14 6 3.9297 -4.1876 6.2428 15 1 4.9027 -4.4569 5.8593 16 6 3.6338 -4.3883 7.5744 17 7 2.4491 -4.0598 8.0415 18 14 4.9157 -5.1268 8.7150 19 1 6.1162 -4.2533 8.7420 20 1 4.3534 -5.2388 10.0849 21 1 5.2959 -6.4760 8.2247 22 6 2.0684 -0.7707 1.2245 23 1 -0.3634 0.5247 -0.8836 24 1 -0.3633 -1.0276 -0.0125 25 1 -0.3633 0.5029 0.8962 26 1 2.1090 3.1378 -0.9691 27 1 1.2387 -1.1484 -1.8254 28 1 2.7067 -0.1245 -1.8263 29 1 2.7519 -2.8367 -1.2435 30 1 3.9379 -1.6734 -0.5747 31 1 3.4501 -3.8547 1.1823 32 1 4.2098 -2.3061 1.6213 33 1 4.3578 -3.7741 3.7939 34 1 2.6164 -2.6011 5.6828 35 1 2.0147 -4.2325 5.3026 36 1 2.2408 -4.2013 8.9782 37 1 2.9960 -0.3211 1.5789 38 1 1.3242 -0.7868 2.0209 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062936308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:22 Heat of formation + Delta-G solvation = -155.234318 kcal Electronic energy + Delta-G solvation = -20925.884688 eV Core-core repulsion = 17573.879059 eV Total energy + Delta-G solvation = -3352.005629 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.94776 -40.67181 -39.15942 -37.17381 -36.13106 -34.68500 -34.31043 -31.03285 -29.77574 -28.09777 -26.73234 -25.02661 -24.13305 -22.35921 -21.39413 -20.77152 -18.92359 -18.87211 -17.97918 -17.54892 -17.09983 -16.88177 -16.56049 -16.14691 -15.95008 -15.48329 -14.97507 -14.68126 -14.43153 -14.20495 -14.03558 -13.73263 -13.50913 -13.26831 -13.08716 -12.93855 -12.70236 -12.62739 -12.48867 -12.32215 -12.22222 -11.98243 -11.80586 -11.51740 -11.37742 -10.79521 -10.66602 -9.83057 -9.51234 -8.29626 -6.46620 1.09203 1.42263 1.46743 1.54887 1.77749 1.91763 2.28493 2.48700 3.05045 3.13775 3.24012 3.55643 3.81307 3.95651 4.21210 4.27163 4.31826 4.34836 4.41315 4.59532 4.71133 4.82393 4.84852 4.94493 5.03483 5.09814 5.15907 5.23494 5.25935 5.48198 5.52107 5.65190 5.71767 5.84106 5.88895 6.64318 6.91889 6.93170 7.22966 7.51565 8.82490 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033677 B = 0.003574 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.234560 B = 7832.956458 C = 8048.624371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.058 4.058 3 C 0.496 3.504 4 O -0.553 6.553 5 O -0.499 6.499 6 C -0.100 4.100 7 C 0.027 3.973 8 N -0.502 5.502 9 C 0.037 3.963 10 C 0.491 3.509 11 O -0.584 6.584 12 N -0.710 5.710 13 C 0.269 3.731 14 C -0.558 4.558 15 H 0.084 0.916 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.986 3.014 19 H -0.263 1.263 20 H -0.285 1.285 21 H -0.260 1.260 22 C 0.048 3.952 23 H 0.091 0.909 24 H 0.078 0.922 25 H 0.045 0.955 26 H 0.428 0.572 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.056 0.944 31 H 0.138 0.862 32 H 0.082 0.918 33 H 0.408 0.592 34 H -0.017 1.017 35 H -0.012 1.012 36 H 0.269 0.731 37 H 0.039 0.961 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.701 7.186 -23.208 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.060 4.060 3 C 0.339 3.661 4 O -0.444 6.444 5 O -0.312 6.312 6 C -0.138 4.138 7 C -0.100 4.100 8 N -0.226 5.226 9 C -0.094 4.094 10 C 0.278 3.722 11 O -0.464 6.464 12 N -0.361 5.361 13 C 0.146 3.854 14 C -0.596 4.596 15 H 0.102 0.898 16 C -0.197 4.197 17 N -0.570 5.570 18 Si 0.809 3.191 19 H -0.187 1.187 20 H -0.211 1.211 21 H -0.185 1.185 22 C -0.080 4.080 23 H 0.110 0.890 24 H 0.097 0.903 25 H 0.064 0.936 26 H 0.290 0.710 27 H 0.128 0.872 28 H 0.111 0.889 29 H 0.132 0.868 30 H 0.074 0.926 31 H 0.156 0.844 32 H 0.100 0.900 33 H 0.244 0.756 34 H 0.001 0.999 35 H 0.006 0.994 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.334 6.830 -22.674 23.718 hybrid contribution 1.523 0.819 1.451 2.257 sum 2.857 7.649 -21.224 22.740 Atomic orbital electron populations 1.21797 0.89650 1.04102 1.02855 1.21240 0.99299 0.87157 0.98339 1.23423 0.75737 0.88607 0.78298 1.90736 1.38178 1.77626 1.37856 1.84473 1.71843 1.28895 1.45953 1.22462 1.01334 0.95531 0.94424 1.23398 0.97380 1.00280 0.88945 1.65219 1.40352 1.14325 1.02744 1.22210 0.94527 1.03426 0.89223 1.21338 0.85881 0.77096 0.87887 1.90620 1.20647 1.50456 1.84700 1.46182 1.17653 1.62761 1.09481 1.18496 0.93987 0.94123 0.78829 1.21604 1.00352 1.43122 0.94480 0.89773 1.26093 0.97998 0.95511 1.00061 1.70143 1.23067 1.47922 1.15871 0.85192 0.78066 0.79207 0.76657 1.18747 1.21074 1.18467 1.23078 1.00403 0.88340 0.96228 0.88977 0.90285 0.93609 0.71018 0.87233 0.88934 0.86828 0.92559 0.84404 0.89997 0.75647 0.99911 0.99431 0.92251 0.94317 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.19 71.98 0.59 -1.98 16 2 C -0.06 -1.30 0.97 -52.03 -0.05 -1.35 16 3 C 0.50 11.33 6.75 71.24 0.48 11.82 16 4 O -0.55 -17.39 16.21 21.98 0.36 -17.03 16 5 O -0.50 -7.12 13.33 -51.37 -0.68 -7.81 16 6 C -0.10 -1.51 6.27 31.49 0.20 -1.31 16 7 C 0.03 0.46 6.49 86.45 0.56 1.02 16 8 N -0.50 -13.53 5.18 -886.02 -4.59 -18.12 16 9 C 0.04 1.02 5.38 85.56 0.46 1.48 16 10 C 0.49 20.17 7.48 87.66 0.66 20.83 16 11 O -0.58 -29.58 14.43 -3.02 -0.04 -29.63 16 12 N -0.71 -30.73 5.55 -466.80 -2.59 -33.32 16 13 C 0.27 15.14 5.43 85.63 0.46 15.61 16 14 C -0.56 -30.91 9.28 25.60 0.24 -30.68 16 15 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 16 C 0.00 0.17 5.46 84.65 0.46 0.63 16 17 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 18 Si 0.99 42.85 29.54 68.60 2.03 44.88 16 19 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 20 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 22 C 0.05 1.48 4.45 86.45 0.38 1.86 16 23 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.43 2.60 9.10 -74.06 -0.67 1.92 16 27 H 0.11 1.27 7.71 -2.38 -0.02 1.25 16 28 H 0.09 1.11 7.69 -2.39 -0.02 1.09 16 29 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 0.87 7.92 -2.39 -0.02 0.85 16 31 H 0.14 2.89 8.14 -2.38 -0.02 2.87 16 32 H 0.08 1.92 7.98 -2.39 -0.02 1.90 16 33 H 0.41 14.42 8.32 -92.71 -0.77 13.64 16 34 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 35 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 36 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 37 H 0.04 1.33 6.75 -2.39 -0.02 1.31 16 38 H 0.07 2.77 6.26 -2.38 -0.01 2.75 16 Total: -1.00 -80.58 319.61 -1.16 -81.74 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -0.36 Total: 18.31 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 4.44 Total: 17.92 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -6.90 Total: -108.38 kcal Atomic # 8 Polarization: -54.09 SS G_CDS: -0.37 Total: -54.47 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -80.58 -1.16 -81.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062936308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.497 kcal (2) G-P(sol) polarization free energy of solvation -80.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds