Wall clock time and date at job start Mon Mar 30 2020 00:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.87866 * 2 1 4 4 O 1.20836 * 120.00006 * 114.69668 * 3 2 1 5 5 O 1.34223 * 120.00388 * 294.42342 * 3 2 1 6 6 C 1.54319 * 109.88711 * 121.03231 * 2 1 3 7 7 C 1.55396 * 102.89947 * 97.38020 * 6 2 1 8 8 C 1.54912 * 101.74160 * 35.48194 * 7 6 2 9 9 N 1.47439 * 109.88964 * 238.96786 * 2 1 3 10 10 C 1.46897 * 110.99960 * 117.17392 * 9 2 1 11 11 C 1.50701 * 109.47327 * 175.57593 * 10 9 2 12 12 O 1.21285 * 119.99908 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00328 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00245 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47227 * 179.97438 * 14 13 11 16 16 H 1.08005 * 120.00191 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00270 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99871 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00403 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46810 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47282 * 119.99880 * 19 17 15 22 22 H 1.48503 * 109.47279 * 239.99993 * 19 17 15 23 23 H 1.09002 * 109.47127 * 60.69998 * 1 2 3 24 24 H 1.09007 * 109.47331 * 180.70051 * 1 2 3 25 25 H 1.08997 * 109.47501 * 300.69897 * 1 2 3 26 26 H 0.96709 * 117.00542 * 180.27921 * 5 3 2 27 27 H 1.08993 * 110.70588 * 215.66280 * 6 2 1 28 28 H 1.09002 * 110.70576 * 338.90375 * 6 2 1 29 29 H 1.09001 * 110.87557 * 277.39329 * 7 6 2 30 30 H 1.09000 * 111.05897 * 153.65023 * 7 6 2 31 31 H 1.09007 * 110.37187 * 204.19014 * 8 7 6 32 32 H 1.09001 * 110.37437 * 81.84880 * 8 7 6 33 33 H 1.08997 * 109.47209 * 295.57269 * 10 9 2 34 34 H 1.09003 * 109.47216 * 55.57741 * 10 9 2 35 35 H 0.96997 * 119.99945 * 359.97438 * 13 11 10 36 36 H 1.08997 * 109.46704 * 299.99637 * 14 13 11 37 37 H 1.08996 * 109.47115 * 59.99966 * 14 13 11 38 38 H 0.96999 * 120.00309 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0424 1.4171 0.0000 4 8 2.6590 1.8366 0.9507 5 8 1.8186 2.2118 -1.0583 6 6 2.0549 -0.7481 1.2435 7 6 2.3559 -2.1694 0.6919 8 6 2.8617 -1.8521 -0.7376 9 7 2.0316 -0.7147 -1.1880 10 6 2.7996 0.1853 -2.0586 11 6 3.3859 -0.6014 -3.2024 12 8 3.1842 -1.7945 -3.2841 13 7 4.1352 0.0207 -4.1341 14 6 4.7047 -0.7440 -5.2464 15 6 5.4927 0.1793 -6.1394 16 1 5.5620 1.2308 -5.9024 17 6 6.1251 -0.3181 -7.2590 18 7 6.0403 -1.5983 -7.5480 19 14 7.1014 0.8266 -8.3664 20 1 7.0404 2.2086 -7.8265 21 1 8.5157 0.3772 -8.4191 22 1 6.5235 0.8040 -9.7342 23 1 -0.3633 0.5029 -0.8962 24 1 -0.3634 -1.0276 0.0126 25 1 -0.3634 0.5246 0.8836 26 1 2.1703 3.1116 -1.0140 27 1 2.9649 -0.2803 1.6190 28 1 1.2915 -0.7873 2.0205 29 1 1.4493 -2.7737 0.6601 30 1 3.1305 -2.6618 1.2798 31 1 2.7148 -2.7117 -1.3916 32 1 3.9138 -1.5680 -0.7135 33 1 2.1415 0.9607 -2.4506 34 1 3.6037 0.6468 -1.4852 35 1 4.2968 0.9748 -4.0686 36 1 5.3623 -1.5200 -4.8547 37 1 3.9004 -1.2047 -5.8200 38 1 6.4855 -1.9483 -8.3354 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079488974.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:00 Heat of formation + Delta-G solvation = -115.988267 kcal Electronic energy + Delta-G solvation = -21474.385052 eV Core-core repulsion = 18124.081260 eV Total energy + Delta-G solvation = -3350.303792 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.38916 -39.11794 -37.92500 -36.45455 -34.20810 -32.48660 -32.20968 -31.61934 -27.95929 -26.45739 -25.55470 -23.86463 -22.50591 -21.47648 -19.82293 -19.64160 -18.21179 -17.34081 -17.08644 -16.19471 -15.40267 -15.22058 -15.13601 -15.00689 -14.72703 -14.12863 -13.82386 -13.33979 -12.91626 -12.80987 -12.78020 -12.43928 -12.09001 -12.02734 -11.85582 -11.72030 -11.55142 -11.10239 -11.09498 -10.94415 -10.86624 -10.79589 -10.65357 -10.31391 -9.39140 -8.98529 -8.75072 -8.41577 -7.88358 -6.17963 -4.24819 1.87979 2.73502 3.22570 3.29604 3.32514 3.35858 3.54851 4.07246 4.29093 4.39975 4.58481 4.85696 4.94541 5.07322 5.18222 5.23049 5.28694 5.36241 5.54211 5.60282 5.65491 5.70381 5.78555 5.81534 6.01514 6.11888 6.22561 6.30560 6.80059 6.83150 7.30065 7.43129 7.50823 7.63301 7.65813 7.95740 8.60941 8.77103 9.08904 9.41974 10.92302 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.030473 B = 0.004212 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.618789 B = 6645.493780 C = 7178.085836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.108 3.892 3 C 0.474 3.526 4 O -0.513 6.513 5 O -0.506 6.506 6 C -0.129 4.129 7 C -0.131 4.131 8 C 0.047 3.953 9 N -0.487 5.487 10 C 0.016 3.984 11 C 0.500 3.500 12 O -0.541 6.541 13 N -0.712 5.712 14 C 0.251 3.749 15 C -0.543 4.543 16 H 0.063 0.937 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.405 0.595 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.045 0.955 33 H 0.129 0.871 34 H 0.050 0.950 35 H 0.390 0.610 36 H 0.026 0.974 37 H 0.028 0.972 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.584 5.254 16.341 19.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.017 3.983 3 C 0.315 3.685 4 O -0.399 6.399 5 O -0.318 6.318 6 C -0.167 4.167 7 C -0.169 4.169 8 C -0.080 4.080 9 N -0.213 5.213 10 C -0.114 4.114 11 C 0.283 3.717 12 O -0.419 6.419 13 N -0.361 5.361 14 C 0.130 3.870 15 C -0.581 4.581 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.091 0.909 24 H 0.098 0.902 25 H 0.078 0.922 26 H 0.265 0.735 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.063 0.937 33 H 0.146 0.854 34 H 0.068 0.932 35 H 0.222 0.778 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.045 3.791 16.057 19.316 hybrid contribution 1.661 2.085 -0.223 2.675 sum -8.384 5.876 15.834 18.856 Atomic orbital electron populations 1.21779 0.90456 1.03909 1.02359 1.22030 0.98520 0.84956 0.92826 1.23990 0.75988 0.89225 0.79281 1.90708 1.37944 1.75652 1.35616 1.84760 1.75059 1.28757 1.43250 1.22930 1.02645 0.95688 0.95484 1.22855 1.02072 0.95860 0.96126 1.23253 0.94721 0.95089 0.94949 1.63625 1.37114 1.07504 1.13040 1.22822 0.97623 0.96185 0.94776 1.20201 0.79511 0.88249 0.83690 1.90636 1.59991 1.14992 1.76299 1.46422 1.50694 1.12306 1.26702 1.19101 0.93490 0.91784 0.82585 1.21263 1.32706 0.94939 1.09231 0.91879 1.24949 0.96293 0.95268 0.97483 1.69982 1.42947 1.12441 1.26896 0.86364 0.79625 0.80611 0.80324 1.19651 1.20808 1.20762 0.90899 0.90237 0.92169 0.73526 0.89701 0.89724 0.90215 0.90284 0.87157 0.93705 0.85361 0.93181 0.77814 0.95605 0.95431 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 8.68 37.16 0.32 -0.89 16 2 C 0.11 1.25 1.10 -131.77 -0.14 1.10 16 3 C 0.47 5.62 5.38 36.00 0.19 5.82 16 4 O -0.51 -7.20 16.21 -18.76 -0.30 -7.50 16 5 O -0.51 -4.79 10.13 -39.24 -0.40 -5.18 16 6 C -0.13 -1.35 5.79 -24.77 -0.14 -1.50 16 7 C -0.13 -1.38 7.08 -24.45 -0.17 -1.56 16 8 C 0.05 0.67 5.15 -2.30 -0.01 0.66 16 9 N -0.49 -6.93 4.75 -218.50 -1.04 -7.97 16 10 C 0.02 0.25 3.97 -4.98 -0.02 0.23 16 11 C 0.50 9.92 7.47 -10.99 -0.08 9.84 16 12 O -0.54 -12.59 13.95 5.55 0.08 -12.51 16 13 N -0.71 -14.92 5.55 -61.47 -0.34 -15.26 16 14 C 0.25 6.62 5.43 -5.19 -0.03 6.59 16 15 C -0.54 -14.68 9.28 -34.44 -0.32 -15.00 16 16 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 19 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.41 2.14 9.10 45.56 0.41 2.56 16 27 H 0.08 0.99 6.95 -51.93 -0.36 0.63 16 28 H 0.08 0.72 7.83 -51.93 -0.41 0.32 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.11 1.83 6.82 -51.92 -0.35 1.48 16 32 H 0.04 0.69 7.71 -51.93 -0.40 0.29 16 33 H 0.13 1.74 5.88 -51.93 -0.31 1.44 16 34 H 0.05 0.72 6.96 -51.93 -0.36 0.36 16 35 H 0.39 7.01 8.32 -40.82 -0.34 6.67 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 311.99 15.07 4.70 4.70 Total: -1.00 -33.41 311.99 -6.70 -40.11 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -4.61 Total: 6.17 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -0.50 Total: 6.96 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.64 Total: -48.50 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.62 Total: -25.19 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.41 -6.70 -40.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079488974.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.881 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds