Wall clock time and date at job start Mon Mar 30 2020 00:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.87866 * 2 1 4 4 O 1.20836 * 120.00006 * 114.69668 * 3 2 1 5 5 O 1.34223 * 120.00388 * 294.42342 * 3 2 1 6 6 C 1.54319 * 109.88711 * 121.03231 * 2 1 3 7 7 C 1.55396 * 102.89947 * 97.38020 * 6 2 1 8 8 C 1.54912 * 101.74160 * 35.48194 * 7 6 2 9 9 N 1.47439 * 109.88964 * 238.96786 * 2 1 3 10 10 C 1.46897 * 110.99960 * 117.17392 * 9 2 1 11 11 C 1.50701 * 109.47327 * 175.57593 * 10 9 2 12 12 O 1.21285 * 119.99908 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00328 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00245 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47227 * 179.97438 * 14 13 11 16 16 H 1.08005 * 120.00191 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00270 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99871 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00403 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46810 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47282 * 119.99880 * 19 17 15 22 22 H 1.48503 * 109.47279 * 239.99993 * 19 17 15 23 23 H 1.09002 * 109.47127 * 60.69998 * 1 2 3 24 24 H 1.09007 * 109.47331 * 180.70051 * 1 2 3 25 25 H 1.08997 * 109.47501 * 300.69897 * 1 2 3 26 26 H 0.96709 * 117.00542 * 180.27921 * 5 3 2 27 27 H 1.08993 * 110.70588 * 215.66280 * 6 2 1 28 28 H 1.09002 * 110.70576 * 338.90375 * 6 2 1 29 29 H 1.09001 * 110.87557 * 277.39329 * 7 6 2 30 30 H 1.09000 * 111.05897 * 153.65023 * 7 6 2 31 31 H 1.09007 * 110.37187 * 204.19014 * 8 7 6 32 32 H 1.09001 * 110.37437 * 81.84880 * 8 7 6 33 33 H 1.08997 * 109.47209 * 295.57269 * 10 9 2 34 34 H 1.09003 * 109.47216 * 55.57741 * 10 9 2 35 35 H 0.96997 * 119.99945 * 359.97438 * 13 11 10 36 36 H 1.08997 * 109.46704 * 299.99637 * 14 13 11 37 37 H 1.08996 * 109.47115 * 59.99966 * 14 13 11 38 38 H 0.96999 * 120.00309 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0424 1.4171 0.0000 4 8 2.6590 1.8366 0.9507 5 8 1.8186 2.2118 -1.0583 6 6 2.0549 -0.7481 1.2435 7 6 2.3559 -2.1694 0.6919 8 6 2.8617 -1.8521 -0.7376 9 7 2.0316 -0.7147 -1.1880 10 6 2.7996 0.1853 -2.0586 11 6 3.3859 -0.6014 -3.2024 12 8 3.1842 -1.7945 -3.2841 13 7 4.1352 0.0207 -4.1341 14 6 4.7047 -0.7440 -5.2464 15 6 5.4927 0.1793 -6.1394 16 1 5.5620 1.2308 -5.9024 17 6 6.1251 -0.3181 -7.2590 18 7 6.0403 -1.5983 -7.5480 19 14 7.1014 0.8266 -8.3664 20 1 7.0404 2.2086 -7.8265 21 1 8.5157 0.3772 -8.4191 22 1 6.5235 0.8040 -9.7342 23 1 -0.3633 0.5029 -0.8962 24 1 -0.3634 -1.0276 0.0126 25 1 -0.3634 0.5246 0.8836 26 1 2.1703 3.1116 -1.0140 27 1 2.9649 -0.2803 1.6190 28 1 1.2915 -0.7873 2.0205 29 1 1.4493 -2.7737 0.6601 30 1 3.1305 -2.6618 1.2798 31 1 2.7148 -2.7117 -1.3916 32 1 3.9138 -1.5680 -0.7135 33 1 2.1415 0.9607 -2.4506 34 1 3.6037 0.6468 -1.4852 35 1 4.2968 0.9748 -4.0686 36 1 5.3623 -1.5200 -4.8547 37 1 3.9004 -1.2047 -5.8200 38 1 6.4855 -1.9483 -8.3354 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079488974.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:00 Heat of formation + Delta-G solvation = -143.043115 kcal Electronic energy + Delta-G solvation = -21475.558239 eV Core-core repulsion = 18124.081260 eV Total energy + Delta-G solvation = -3351.476979 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.36422 -40.54686 -39.11649 -37.34728 -36.14436 -34.37836 -33.45274 -32.53225 -29.78166 -27.63125 -26.78965 -24.80918 -24.41472 -22.55209 -21.44142 -20.61574 -19.18309 -18.93965 -18.11802 -17.77066 -16.92336 -16.75255 -16.55186 -16.16224 -15.97415 -15.62650 -15.08253 -14.58429 -14.29867 -14.21037 -13.97178 -13.65032 -13.50322 -13.31315 -12.95239 -12.90554 -12.78364 -12.75268 -12.46744 -12.24266 -12.14538 -12.03292 -11.67529 -11.56352 -11.46084 -10.81979 -10.61817 -9.84915 -9.53773 -8.29879 -6.46379 0.96011 1.43024 1.43977 1.57371 1.71478 1.94125 2.19781 2.41572 2.88617 3.05288 3.36253 3.58966 3.94014 3.95588 4.08715 4.11644 4.15171 4.36954 4.58793 4.67055 4.75464 4.88264 4.90016 5.02283 5.09781 5.10890 5.20210 5.23893 5.35113 5.44665 5.48122 5.63429 5.74033 5.80971 5.84465 6.64443 6.87047 6.88706 7.22815 7.46600 8.82559 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.030473 B = 0.004212 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.618789 B = 6645.493780 C = 7178.085836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.102 3.898 3 C 0.478 3.522 4 O -0.536 6.536 5 O -0.503 6.503 6 C -0.124 4.124 7 C -0.119 4.119 8 C 0.043 3.957 9 N -0.499 5.499 10 C 0.034 3.966 11 C 0.495 3.505 12 O -0.579 6.579 13 N -0.708 5.708 14 C 0.269 3.731 15 C -0.556 4.556 16 H 0.083 0.917 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.984 3.016 20 H -0.253 1.253 21 H -0.279 1.279 22 H -0.278 1.278 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.426 0.574 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.026 0.974 33 H 0.150 0.850 34 H 0.062 0.938 35 H 0.407 0.593 36 H -0.013 1.013 37 H -0.011 1.011 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.137 7.539 17.369 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.012 3.988 3 C 0.320 3.680 4 O -0.424 6.424 5 O -0.317 6.317 6 C -0.162 4.162 7 C -0.157 4.157 8 C -0.084 4.084 9 N -0.226 5.226 10 C -0.096 4.096 11 C 0.282 3.718 12 O -0.459 6.459 13 N -0.358 5.358 14 C 0.146 3.854 15 C -0.594 4.594 16 H 0.101 0.899 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.808 3.192 20 H -0.177 1.177 21 H -0.205 1.205 22 H -0.204 1.204 23 H 0.087 0.913 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.289 0.711 27 H 0.091 0.909 28 H 0.129 0.871 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.045 0.955 33 H 0.167 0.833 34 H 0.080 0.920 35 H 0.242 0.758 36 H 0.005 0.995 37 H 0.007 0.993 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.618 6.133 17.112 21.052 hybrid contribution 1.787 1.343 -0.525 2.296 sum -8.832 7.476 16.587 20.224 Atomic orbital electron populations 1.21796 0.88599 1.04561 1.03198 1.22208 0.99800 0.84866 0.91951 1.23956 0.75368 0.89418 0.79276 1.90710 1.38957 1.76198 1.36585 1.84666 1.74752 1.30126 1.42175 1.22933 1.02884 0.94809 0.95576 1.22819 1.02926 0.96526 0.93449 1.23138 0.93990 0.94308 0.96945 1.63603 1.36717 1.07738 1.14502 1.22712 0.98184 0.95673 0.93023 1.21119 0.78401 0.88121 0.84197 1.90628 1.61011 1.17050 1.77221 1.46157 1.50950 1.12886 1.25831 1.18531 0.91663 0.91565 0.83654 1.21646 1.32536 0.95809 1.09369 0.89867 1.26049 0.97331 0.96903 0.99213 1.70139 1.44166 1.14869 1.27756 0.85117 0.77515 0.78858 0.77760 1.17666 1.20511 1.20392 0.91316 0.89751 0.90038 0.71141 0.90930 0.87083 0.88818 0.88959 0.90249 0.95546 0.83283 0.91983 0.75772 0.99510 0.99306 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 8.68 71.98 0.62 -1.38 16 2 C 0.10 2.14 1.10 3.12 0.00 2.15 16 3 C 0.48 10.17 5.38 71.23 0.38 10.56 16 4 O -0.54 -13.89 16.21 21.93 0.36 -13.53 16 5 O -0.50 -8.04 10.13 -51.34 -0.52 -8.57 16 6 C -0.12 -2.31 5.79 31.87 0.18 -2.12 16 7 C -0.12 -2.34 7.08 32.07 0.23 -2.12 16 8 C 0.04 1.26 5.15 86.78 0.45 1.71 16 9 N -0.50 -13.80 4.75 -845.21 -4.01 -17.81 16 10 C 0.03 1.00 3.97 85.56 0.34 1.34 16 11 C 0.50 20.06 7.47 87.66 0.65 20.72 16 12 O -0.58 -28.25 13.95 -3.05 -0.04 -28.29 16 13 N -0.71 -30.11 5.55 -466.80 -2.59 -32.70 16 14 C 0.27 14.78 5.43 85.63 0.46 15.25 16 15 C -0.56 -30.22 9.28 25.60 0.24 -29.98 16 16 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 17 C 0.00 0.26 5.46 84.65 0.46 0.72 16 18 N -0.93 -56.13 13.29 21.45 0.28 -55.85 16 19 Si 0.98 42.22 29.54 68.60 2.03 44.25 16 20 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 23 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 25 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.43 3.15 9.10 -74.05 -0.67 2.47 16 27 H 0.07 1.57 6.95 -2.39 -0.02 1.55 16 28 H 0.11 1.50 7.83 -2.39 -0.02 1.48 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 2.79 6.82 -2.38 -0.02 2.77 16 32 H 0.03 0.84 7.71 -2.39 -0.02 0.82 16 33 H 0.15 3.73 5.88 -2.39 -0.01 3.71 16 34 H 0.06 1.69 6.96 -2.39 -0.02 1.67 16 35 H 0.41 14.30 8.32 -92.71 -0.77 13.53 16 36 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 37 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 38 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -74.87 311.99 -0.82 -75.70 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -0.35 Total: 19.98 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 4.03 Total: 16.84 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -6.32 Total: -106.37 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -0.21 Total: -50.39 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -74.87 -0.82 -75.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079488974.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.347 kcal (2) G-P(sol) polarization free energy of solvation -74.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds