Wall clock time and date at job start Mon Mar 30 2020 02:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.36392 * 2 1 4 4 C 1.54374 * 110.32162 * 237.81579 * 2 1 3 5 5 N 1.48558 * 104.69742 * 217.30803 * 4 2 1 6 6 C 1.46906 * 111.00271 * 158.98284 * 5 4 2 7 7 C 1.50699 * 109.47069 * 169.99981 * 6 5 4 8 8 O 1.21278 * 120.00143 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99754 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00058 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.47087 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99668 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99942 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99707 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00036 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46854 * 359.97438 * 15 13 11 17 17 H 1.48489 * 109.47322 * 119.99885 * 15 13 11 18 18 H 1.48502 * 109.47035 * 240.00197 * 15 13 11 19 19 C 1.48562 * 104.22304 * 39.42969 * 5 4 2 20 20 C 1.54387 * 104.59211 * 320.51348 * 19 5 4 21 21 H 1.08993 * 110.32418 * 264.95813 * 20 19 5 22 22 C 1.50702 * 110.32147 * 142.84797 * 20 19 5 23 23 O 1.20823 * 120.00410 * 330.53954 * 22 20 19 24 24 O 1.34232 * 119.99653 * 150.53868 * 22 20 19 25 25 H 1.09002 * 109.47104 * 176.73862 * 1 2 3 26 26 H 1.09001 * 109.47344 * 296.73368 * 1 2 3 27 27 H 1.08995 * 109.47272 * 56.74129 * 1 2 3 28 28 H 1.09003 * 110.41162 * 98.47422 * 4 2 1 29 29 H 1.08997 * 110.41486 * 336.14828 * 4 2 1 30 30 H 1.08999 * 109.46955 * 290.00367 * 6 5 4 31 31 H 1.08997 * 109.46816 * 49.99822 * 6 5 4 32 32 H 0.97006 * 119.99673 * 0.02562 * 9 7 6 33 33 H 1.08999 * 109.47393 * 300.00464 * 10 9 7 34 34 H 1.08999 * 109.46803 * 60.00252 * 10 9 7 35 35 H 0.97006 * 119.99636 * 179.97438 * 14 13 11 36 36 H 1.08996 * 110.41618 * 79.29026 * 19 5 4 37 37 H 1.08997 * 110.41745 * 201.62267 * 19 5 4 38 38 H 0.96701 * 116.99754 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0662 -0.7711 -1.2252 5 7 3.2689 -1.4850 -0.7245 6 6 3.6034 -2.6241 -1.5899 7 6 4.9527 -3.1710 -1.2012 8 8 5.5743 -2.6624 -0.2924 9 7 5.4682 -4.2260 -1.8628 10 6 6.7797 -4.7581 -1.4846 11 6 7.1229 -5.9265 -2.3724 12 1 6.4331 -6.2409 -3.1418 13 6 8.3173 -6.5940 -2.2026 14 7 9.1568 -6.2114 -1.2653 15 14 8.7429 -8.0418 -3.3036 16 1 7.6391 -8.2696 -4.2705 17 1 9.9970 -7.7494 -4.0430 18 1 8.9306 -9.2577 -2.4719 19 6 2.8814 -1.9445 0.6341 20 6 2.0692 -0.7718 1.2244 21 1 2.7135 -0.1295 1.8247 22 6 0.9276 -1.2932 2.0586 23 8 0.4220 -2.3579 1.7926 24 8 0.4724 -0.5749 3.0971 25 1 -0.3633 -1.0260 -0.0585 26 1 -0.3634 0.4623 0.9178 27 1 -0.3633 0.5636 -0.8593 28 1 2.3394 -0.0780 -2.0209 29 1 1.3221 -1.4834 -1.5815 30 1 2.8488 -3.4021 -1.4742 31 1 3.6301 -2.2954 -2.6288 32 1 4.9708 -4.6330 -2.5894 33 1 7.5346 -3.9804 -1.6002 34 1 6.7527 -5.0865 -0.4456 35 1 9.9970 -6.6813 -1.1456 36 1 2.2640 -2.8405 0.5707 37 1 3.7683 -2.1369 1.2378 38 1 -0.2612 -0.9506 3.6029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111254539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:41 Heat of formation + Delta-G solvation = -127.714503 kcal Electronic energy + Delta-G solvation = -20755.296365 eV Core-core repulsion = 17404.484085 eV Total energy + Delta-G solvation = -3350.812280 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.05154 -39.21643 -37.97422 -36.27473 -34.18686 -33.52881 -32.28973 -30.41178 -28.46756 -26.72774 -25.41489 -23.58247 -22.27290 -21.27973 -20.01147 -19.48501 -18.29765 -17.12943 -16.86272 -16.53984 -15.71841 -15.46238 -15.28991 -14.91389 -14.57143 -14.17883 -13.80406 -13.44820 -13.19286 -12.97172 -12.64624 -12.51561 -12.07333 -11.96835 -11.88961 -11.75545 -11.46969 -11.29352 -11.11709 -10.95014 -10.92750 -10.82761 -10.56549 -10.30193 -9.36173 -9.05557 -8.72063 -8.42350 -7.83561 -6.15376 -4.22049 1.96707 2.74343 3.24355 3.31321 3.34398 3.42269 3.72035 4.17280 4.26509 4.30377 4.47800 4.64230 4.97291 5.11484 5.11834 5.18853 5.20749 5.32874 5.36464 5.41119 5.47427 5.58321 5.63865 5.71187 5.82296 5.94654 6.02606 6.25243 6.71283 6.82906 7.34501 7.48131 7.54653 7.66668 7.69721 7.98977 8.66531 8.81307 9.15730 9.44821 10.94883 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.038645 B = 0.003319 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.369896 B = 8433.914931 C = 8650.089764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.078 4.078 3 H 0.097 0.903 4 C 0.033 3.967 5 N -0.485 5.485 6 C 0.024 3.976 7 C 0.500 3.500 8 O -0.539 6.539 9 N -0.716 5.716 10 C 0.251 3.749 11 C -0.542 4.542 12 H 0.063 0.937 13 C 0.063 3.937 14 N -0.885 5.885 15 Si 0.904 3.096 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.044 3.956 20 C -0.087 4.087 21 H 0.115 0.885 22 C 0.493 3.507 23 O -0.514 6.514 24 O -0.516 6.516 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.389 0.611 33 H 0.027 0.973 34 H 0.026 0.974 35 H 0.265 0.735 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.027 12.246 2.526 22.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.097 4.097 3 H 0.115 0.885 4 C -0.095 4.095 5 N -0.208 5.208 6 C -0.108 4.108 7 C 0.283 3.717 8 O -0.416 6.416 9 N -0.365 5.365 10 C 0.130 3.870 11 C -0.581 4.581 12 H 0.081 0.919 13 C -0.141 4.141 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.084 4.084 20 C -0.107 4.107 21 H 0.133 0.867 22 C 0.335 3.665 23 O -0.402 6.402 24 O -0.328 6.328 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.222 0.778 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -17.687 12.758 2.966 22.010 hybrid contribution -1.084 -1.858 -0.599 2.233 sum -18.771 10.900 2.367 21.835 Atomic orbital electron populations 1.22117 0.94388 1.02834 1.02659 1.21854 0.95606 1.00028 0.92182 0.88482 1.23289 0.91492 0.97580 0.97132 1.65172 1.31986 1.22279 1.01389 1.22231 0.96521 0.93305 0.98756 1.20224 0.87116 0.80939 0.83397 1.90644 1.61604 1.59207 1.30160 1.46444 1.22774 1.31318 1.35967 1.19085 0.78005 0.93599 0.96285 1.21274 1.04128 1.14675 1.17983 0.91872 1.24959 0.95939 0.97646 0.95535 1.69991 1.09884 1.40612 1.31798 0.86362 0.78428 0.81869 0.80255 1.19645 1.20798 1.20821 1.23224 0.99229 0.94620 0.91338 1.21928 0.93372 0.99652 0.95732 0.86711 1.23256 0.83261 0.81922 0.78041 1.90716 1.57773 1.22911 1.68771 1.84574 1.52667 1.53054 1.42491 0.91835 0.91985 0.91388 0.89282 0.93214 0.91832 0.88051 0.77844 0.95521 0.95634 0.92521 0.91949 0.87815 0.73367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 7.96 37.16 0.30 -1.01 16 2 C -0.08 -0.71 3.66 -89.14 -0.33 -1.04 16 3 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.03 0.34 6.00 -2.19 -0.01 0.33 16 5 N -0.48 -6.81 4.98 -231.41 -1.15 -7.97 16 6 C 0.02 0.34 5.32 -4.97 -0.03 0.31 16 7 C 0.50 10.01 7.68 -10.99 -0.08 9.93 16 8 O -0.54 -12.97 15.22 5.56 0.08 -12.88 16 9 N -0.72 -15.13 5.55 -61.47 -0.34 -15.47 16 10 C 0.25 6.71 5.43 -5.19 -0.03 6.68 16 11 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 12 H 0.06 1.61 7.60 -52.48 -0.40 1.22 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 15 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 19 C 0.04 0.62 5.42 -2.18 -0.01 0.60 16 20 C -0.09 -0.95 3.56 -90.28 -0.32 -1.27 16 21 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 22 C 0.49 5.39 5.25 36.01 0.19 5.58 16 23 O -0.51 -7.08 15.71 -18.75 -0.29 -7.38 16 24 O -0.52 -4.18 13.12 -39.26 -0.52 -4.70 16 25 H 0.06 0.61 7.00 -51.93 -0.36 0.25 16 26 H 0.06 0.47 7.25 -51.93 -0.38 0.09 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 30 H 0.06 0.83 7.77 -51.93 -0.40 0.43 16 31 H 0.10 1.23 8.08 -51.93 -0.42 0.81 16 32 H 0.39 7.01 8.32 -40.82 -0.34 6.67 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.06 0.93 6.50 -51.93 -0.34 0.59 16 37 H 0.10 1.70 7.23 -51.93 -0.38 1.33 16 38 H 0.41 1.61 9.10 45.56 0.41 2.02 16 LS Contribution 317.40 15.07 4.78 4.78 Total: -1.00 -34.62 317.40 -7.13 -41.75 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.67 Total: 4.80 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -0.74 Total: 6.64 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.76 Total: -48.95 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.73 Total: -24.96 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.62 -7.13 -41.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111254539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.965 kcal (2) G-P(sol) polarization free energy of solvation -34.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds