Wall clock time and date at job start Mon Mar 30 2020 02:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.36392 * 2 1 4 4 C 1.54374 * 110.32162 * 237.81579 * 2 1 3 5 5 N 1.48558 * 104.69742 * 217.30803 * 4 2 1 6 6 C 1.46906 * 111.00271 * 158.98284 * 5 4 2 7 7 C 1.50699 * 109.47069 * 169.99981 * 6 5 4 8 8 O 1.21278 * 120.00143 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99754 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00058 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.47087 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99668 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99942 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99707 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00036 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46854 * 359.97438 * 15 13 11 17 17 H 1.48489 * 109.47322 * 119.99885 * 15 13 11 18 18 H 1.48502 * 109.47035 * 240.00197 * 15 13 11 19 19 C 1.48562 * 104.22304 * 39.42969 * 5 4 2 20 20 C 1.54387 * 104.59211 * 320.51348 * 19 5 4 21 21 H 1.08993 * 110.32418 * 264.95813 * 20 19 5 22 22 C 1.50702 * 110.32147 * 142.84797 * 20 19 5 23 23 O 1.20823 * 120.00410 * 330.53954 * 22 20 19 24 24 O 1.34232 * 119.99653 * 150.53868 * 22 20 19 25 25 H 1.09002 * 109.47104 * 176.73862 * 1 2 3 26 26 H 1.09001 * 109.47344 * 296.73368 * 1 2 3 27 27 H 1.08995 * 109.47272 * 56.74129 * 1 2 3 28 28 H 1.09003 * 110.41162 * 98.47422 * 4 2 1 29 29 H 1.08997 * 110.41486 * 336.14828 * 4 2 1 30 30 H 1.08999 * 109.46955 * 290.00367 * 6 5 4 31 31 H 1.08997 * 109.46816 * 49.99822 * 6 5 4 32 32 H 0.97006 * 119.99673 * 0.02562 * 9 7 6 33 33 H 1.08999 * 109.47393 * 300.00464 * 10 9 7 34 34 H 1.08999 * 109.46803 * 60.00252 * 10 9 7 35 35 H 0.97006 * 119.99636 * 179.97438 * 14 13 11 36 36 H 1.08996 * 110.41618 * 79.29026 * 19 5 4 37 37 H 1.08997 * 110.41745 * 201.62267 * 19 5 4 38 38 H 0.96701 * 116.99754 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0662 -0.7711 -1.2252 5 7 3.2689 -1.4850 -0.7245 6 6 3.6034 -2.6241 -1.5899 7 6 4.9527 -3.1710 -1.2012 8 8 5.5743 -2.6624 -0.2924 9 7 5.4682 -4.2260 -1.8628 10 6 6.7797 -4.7581 -1.4846 11 6 7.1229 -5.9265 -2.3724 12 1 6.4331 -6.2409 -3.1418 13 6 8.3173 -6.5940 -2.2026 14 7 9.1568 -6.2114 -1.2653 15 14 8.7429 -8.0418 -3.3036 16 1 7.6391 -8.2696 -4.2705 17 1 9.9970 -7.7494 -4.0430 18 1 8.9306 -9.2577 -2.4719 19 6 2.8814 -1.9445 0.6341 20 6 2.0692 -0.7718 1.2244 21 1 2.7135 -0.1295 1.8247 22 6 0.9276 -1.2932 2.0586 23 8 0.4220 -2.3579 1.7926 24 8 0.4724 -0.5749 3.0971 25 1 -0.3633 -1.0260 -0.0585 26 1 -0.3634 0.4623 0.9178 27 1 -0.3633 0.5636 -0.8593 28 1 2.3394 -0.0780 -2.0209 29 1 1.3221 -1.4834 -1.5815 30 1 2.8488 -3.4021 -1.4742 31 1 3.6301 -2.2954 -2.6288 32 1 4.9708 -4.6330 -2.5894 33 1 7.5346 -3.9804 -1.6002 34 1 6.7527 -5.0865 -0.4456 35 1 9.9970 -6.6813 -1.1456 36 1 2.2640 -2.8405 0.5707 37 1 3.7683 -2.1369 1.2378 38 1 -0.2612 -0.9506 3.6029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111254539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:41 Heat of formation + Delta-G solvation = -156.214031 kcal Electronic energy + Delta-G solvation = -20756.532197 eV Core-core repulsion = 17404.484085 eV Total energy + Delta-G solvation = -3352.048112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.93632 -40.59884 -39.18438 -37.09403 -36.11087 -34.58085 -34.29324 -31.31785 -30.04530 -28.24284 -26.38697 -24.97212 -23.82387 -22.27059 -21.37203 -20.67063 -19.12123 -18.89423 -17.83204 -17.59365 -17.35771 -16.91054 -16.46819 -16.33073 -16.04632 -15.45893 -15.07099 -14.72550 -14.36312 -14.02557 -13.89564 -13.86058 -13.59360 -13.38164 -13.01327 -12.87477 -12.77318 -12.58710 -12.51257 -12.23547 -12.17692 -11.94063 -11.77560 -11.45388 -11.39860 -10.81276 -10.70362 -9.80865 -9.51743 -8.29210 -6.45748 1.11795 1.43106 1.44365 1.57837 1.80749 1.96579 2.29117 2.48523 3.05684 3.15707 3.32800 3.46282 3.86645 3.98292 4.14708 4.26349 4.27573 4.36031 4.43193 4.49329 4.63651 4.70734 4.76017 4.88296 4.97969 5.11607 5.14175 5.24908 5.28205 5.49770 5.55607 5.65872 5.71508 5.84916 5.87322 6.65853 6.95526 6.95696 7.23932 7.53971 8.83275 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.038645 B = 0.003319 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.369896 B = 8433.914931 C = 8650.089764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.072 4.072 3 H 0.115 0.885 4 C 0.034 3.966 5 N -0.505 5.505 6 C 0.038 3.962 7 C 0.494 3.506 8 O -0.585 6.585 9 N -0.711 5.711 10 C 0.268 3.732 11 C -0.555 4.555 12 H 0.084 0.916 13 C 0.002 3.998 14 N -0.931 5.931 15 Si 0.986 3.014 16 H -0.253 1.253 17 H -0.278 1.278 18 H -0.280 1.280 19 C 0.045 3.955 20 C -0.087 4.087 21 H 0.122 0.878 22 C 0.501 3.499 23 O -0.547 6.547 24 O -0.507 6.507 25 H 0.045 0.955 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.135 0.865 32 H 0.408 0.592 33 H -0.013 1.013 34 H -0.016 1.016 35 H 0.268 0.732 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.104 12.669 0.709 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.091 4.091 3 H 0.133 0.867 4 C -0.093 4.093 5 N -0.229 5.229 6 C -0.094 4.094 7 C 0.281 3.719 8 O -0.465 6.465 9 N -0.362 5.362 10 C 0.145 3.855 11 C -0.593 4.593 12 H 0.102 0.898 13 C -0.197 4.197 14 N -0.570 5.570 15 Si 0.809 3.191 16 H -0.176 1.176 17 H -0.204 1.204 18 H -0.205 1.205 19 C -0.083 4.083 20 C -0.107 4.107 21 H 0.140 0.860 22 C 0.345 3.655 23 O -0.437 6.437 24 O -0.321 6.321 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.127 0.873 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.153 0.847 32 H 0.243 0.757 33 H 0.005 0.995 34 H 0.002 0.998 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -19.833 13.208 1.141 23.856 hybrid contribution -0.456 -1.905 0.071 1.960 sum -20.289 11.303 1.211 23.256 Atomic orbital electron populations 1.22061 0.93249 1.02126 1.03889 1.21920 0.96421 1.00353 0.90413 0.86679 1.23420 0.90089 0.97717 0.98048 1.65106 1.34400 1.22120 1.01310 1.22148 0.92686 0.94190 1.00342 1.21314 0.88802 0.79749 0.82043 1.90623 1.63412 1.60393 1.32083 1.46186 1.21149 1.31974 1.36865 1.18507 0.79900 0.92742 0.94352 1.21662 1.04765 1.14580 1.18267 0.89783 1.26087 0.95718 1.00928 0.96999 1.70153 1.10563 1.42401 1.33897 0.85096 0.78566 0.77309 0.78146 1.17590 1.20387 1.20536 1.23035 0.97909 0.95737 0.91653 1.21910 0.93414 0.98572 0.96820 0.85992 1.23152 0.82829 0.81340 0.78200 1.90708 1.58894 1.24305 1.69833 1.84521 1.53414 1.52475 1.41675 0.93550 0.91453 0.89370 0.87318 0.92395 0.89834 0.84687 0.75664 0.99486 0.99763 0.92271 0.93146 0.91383 0.71078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 7.96 71.98 0.57 -1.48 16 2 C -0.07 -1.14 3.66 -9.83 -0.04 -1.17 16 3 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 4 C 0.03 0.61 6.00 86.45 0.52 1.13 16 5 N -0.51 -13.66 4.98 -886.04 -4.41 -18.07 16 6 C 0.04 1.03 5.32 85.56 0.45 1.49 16 7 C 0.49 20.16 7.68 87.66 0.67 20.83 16 8 O -0.58 -29.57 15.22 -3.02 -0.05 -29.62 16 9 N -0.71 -30.49 5.55 -466.79 -2.59 -33.08 16 10 C 0.27 14.98 5.43 85.63 0.46 15.45 16 11 C -0.55 -30.54 9.28 25.60 0.24 -30.30 16 12 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 13 C 0.00 0.12 5.46 84.65 0.46 0.58 16 14 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 15 Si 0.99 42.69 29.54 68.60 2.03 44.71 16 16 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 19 C 0.04 1.28 5.42 86.45 0.47 1.75 16 20 C -0.09 -1.83 3.56 -10.58 -0.04 -1.87 16 21 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 22 C 0.50 10.46 5.25 71.24 0.37 10.83 16 23 O -0.55 -14.86 15.71 21.97 0.35 -14.51 16 24 O -0.51 -7.29 13.12 -51.44 -0.67 -7.97 16 25 H 0.05 0.79 7.00 -2.39 -0.02 0.78 16 26 H 0.07 0.83 7.25 -2.39 -0.02 0.81 16 27 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 0.97 7.66 -2.39 -0.02 0.95 16 30 H 0.08 2.01 7.77 -2.39 -0.02 1.99 16 31 H 0.14 2.83 8.08 -2.39 -0.02 2.81 16 32 H 0.41 14.28 8.32 -92.70 -0.77 13.51 16 33 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 34 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 35 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 36 H 0.05 1.54 6.50 -2.39 -0.02 1.52 16 37 H 0.07 2.40 7.23 -2.39 -0.02 2.38 16 38 H 0.43 2.53 9.10 -74.06 -0.67 1.85 16 Total: -1.00 -78.81 317.40 -1.27 -80.08 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -0.36 Total: 17.79 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 4.15 Total: 17.23 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -6.72 Total: -107.72 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -0.38 Total: -52.10 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -78.81 -1.27 -80.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111254539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.133 kcal (2) G-P(sol) polarization free energy of solvation -78.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds