Wall clock time and date at job start Mon Mar 30 2020 02:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.52238 * 2 1 4 4 C 1.53120 * 109.57407 * 239.84233 * 2 1 3 5 5 C 1.53033 * 109.27577 * 182.40990 * 4 2 1 6 6 N 1.46857 * 109.51385 * 59.18508 * 5 4 2 7 7 C 1.46901 * 110.98952 * 174.15031 * 6 5 4 8 8 C 1.50709 * 109.47147 * 294.20165 * 7 6 5 9 9 O 1.21291 * 119.99648 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99924 * 179.97438 * 8 7 6 11 11 C 1.37091 * 120.00060 * 179.97438 * 10 8 7 12 12 H 1.08006 * 119.99741 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00464 * 180.02562 * 11 10 8 14 14 N 1.31414 * 119.99707 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00144 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47188 * 59.99940 * 15 13 11 17 17 H 1.48508 * 109.47030 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47066 * 299.99502 * 15 13 11 19 19 C 1.46838 * 111.19525 * 298.23760 * 6 5 4 20 20 H 1.08998 * 109.46926 * 301.74933 * 19 6 5 21 21 C 1.50706 * 109.46210 * 181.77231 * 19 6 5 22 22 O 1.20825 * 119.99859 * 339.97493 * 21 19 6 23 23 O 1.34224 * 120.00295 * 159.98452 * 21 19 6 24 24 C 1.53036 * 109.51429 * 61.75964 * 19 6 5 25 25 H 1.08999 * 109.47489 * 299.87408 * 1 2 3 26 26 H 1.09003 * 109.46805 * 59.87578 * 1 2 3 27 27 H 1.08996 * 109.47162 * 179.86800 * 1 2 3 28 28 H 1.09005 * 109.50288 * 302.34769 * 4 2 1 29 29 H 1.08993 * 109.50503 * 62.46931 * 4 2 1 30 30 H 1.09004 * 109.46263 * 179.19336 * 5 4 2 31 31 H 1.08995 * 109.46919 * 299.16345 * 5 4 2 32 32 H 1.08999 * 109.47084 * 54.20211 * 7 6 5 33 33 H 1.08993 * 109.46962 * 174.20149 * 7 6 5 34 34 H 0.96997 * 120.00205 * 0.02562 * 10 8 7 35 35 H 0.96994 * 120.00130 * 180.02562 * 14 13 11 36 36 H 0.96700 * 117.00196 * 179.97438 * 23 21 19 37 37 H 1.09005 * 109.50466 * 60.75951 * 24 19 6 38 38 H 1.09004 * 109.50172 * 180.86873 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0430 -0.7248 -1.2474 5 6 3.5721 -0.7735 -1.2104 6 7 4.0113 -1.4769 0.0017 7 6 5.4683 -1.6646 0.0024 8 6 5.8555 -2.5947 -1.1185 9 8 5.0017 -3.0553 -1.8465 10 7 7.1505 -2.9137 -1.3125 11 6 7.5027 -3.7601 -2.3318 12 1 6.7423 -4.1710 -2.9796 13 6 8.8377 -4.0895 -2.5315 14 7 9.7628 -3.5892 -1.7436 15 14 9.3175 -5.2423 -3.9208 16 1 8.8945 -4.6568 -5.2183 17 1 10.7905 -5.4316 -3.9205 18 1 8.6493 -6.5544 -3.7284 19 6 3.5709 -0.7731 1.2129 20 1 3.9665 0.2425 1.2071 21 6 4.0782 -1.5027 2.4300 22 8 4.4125 -2.6606 2.3446 23 8 4.1586 -0.8662 3.6090 24 6 2.0417 -0.7243 1.2482 25 1 -0.3634 0.5119 0.8911 26 1 -0.3633 0.5158 -0.8889 27 1 -0.3633 -1.0276 -0.0024 28 1 1.6469 -1.7401 -1.2671 29 1 1.7175 -0.1892 -2.1392 30 1 3.9401 -1.3016 -2.0901 31 1 3.9679 0.2420 -1.2047 32 1 5.9588 -0.7015 -0.1388 33 1 5.7787 -2.0943 0.9547 34 1 7.8333 -2.5450 -0.7305 35 1 10.6948 -3.8188 -1.8833 36 1 4.4897 -1.3757 4.3613 37 1 1.6455 -1.7396 1.2679 38 1 1.7152 -0.1884 2.1395 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129496889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:19 Heat of formation + Delta-G solvation = -125.574716 kcal Electronic energy + Delta-G solvation = -21515.854488 eV Core-core repulsion = 18165.134996 eV Total energy + Delta-G solvation = -3350.719492 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.70628 -38.81616 -37.66994 -36.09307 -34.45325 -33.67410 -31.27159 -31.17340 -29.09895 -26.12295 -24.81679 -24.02420 -22.56564 -20.75367 -19.67877 -19.17060 -17.99778 -17.81822 -16.63071 -16.10726 -15.53271 -15.34910 -14.90867 -14.61376 -14.09258 -13.92777 -13.70388 -13.66126 -13.44296 -12.78522 -12.69374 -12.23089 -12.09422 -11.78955 -11.58349 -11.46305 -11.27387 -11.20873 -10.97995 -10.85716 -10.64038 -10.40745 -10.20143 -10.16217 -10.00057 -9.40225 -8.42027 -7.94710 -7.85199 -6.36270 -3.76844 2.23872 2.88939 3.23879 3.28901 3.33513 3.89153 3.97573 4.26456 4.66922 4.72476 4.80521 5.03716 5.10066 5.27275 5.29800 5.31844 5.48106 5.55913 5.60077 5.65596 5.70424 5.83793 5.89988 5.94495 6.05096 6.09833 6.17435 6.32472 6.47123 6.50636 6.52242 7.18709 7.29681 7.60043 7.96789 8.11534 8.67522 9.23282 9.60129 10.12116 10.81718 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.025260 B = 0.004826 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.213945 B = 5800.460694 C = 6630.520157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.111 4.111 5 C 0.055 3.945 6 N -0.495 5.495 7 C 0.034 3.966 8 C 0.452 3.548 9 O -0.576 6.576 10 N -0.565 5.565 11 C -0.297 4.297 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.903 5.903 15 Si 0.931 3.069 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.097 3.903 20 H 0.071 0.929 21 C 0.474 3.526 22 O -0.482 6.482 23 O -0.522 6.522 24 C -0.099 4.099 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.025 0.975 32 H 0.046 0.954 33 H 0.098 0.902 34 H 0.391 0.609 35 H 0.271 0.729 36 H 0.409 0.591 37 H 0.079 0.921 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.710 10.319 8.181 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.072 4.072 6 N -0.222 5.222 7 C -0.097 4.097 8 C 0.237 3.763 9 O -0.460 6.460 10 N -0.201 5.201 11 C -0.427 4.427 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.545 5.545 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.013 4.013 20 H 0.088 0.912 21 C 0.314 3.686 22 O -0.367 6.367 23 O -0.334 6.334 24 C -0.137 4.137 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.129 0.871 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.224 0.776 35 H 0.081 0.919 36 H 0.267 0.733 37 H 0.098 0.902 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.337 9.402 7.321 17.885 hybrid contribution 1.527 0.075 0.355 1.570 sum -11.810 9.476 7.676 16.976 Atomic orbital electron populations 1.21790 0.94802 1.02069 1.01493 1.21198 0.95807 0.99176 0.94880 0.91266 1.21668 0.95105 1.01476 0.96614 1.22340 0.95323 0.95684 0.93850 1.61334 1.12404 1.48649 0.99791 1.22081 0.87406 0.98789 1.01454 1.19536 0.83434 0.86130 0.87173 1.90471 1.49229 1.57167 1.49134 1.41827 1.05754 1.42637 1.29896 1.19649 0.92738 1.22227 1.08068 0.87949 1.25251 0.95405 0.98531 0.98774 1.69609 1.01414 1.44845 1.38631 0.85917 0.77105 0.80370 0.80805 1.19949 1.21025 1.19902 1.21199 0.97580 0.95583 0.86917 0.91176 1.23395 0.74959 0.86024 0.84175 1.90783 1.43386 1.17715 1.84833 1.84515 1.79660 1.48991 1.20218 1.21613 0.90841 1.02553 0.98697 0.92847 0.92529 0.92416 0.90548 0.91432 0.87054 0.95669 0.93648 0.88444 0.77564 0.91888 0.73271 0.90184 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.21 37.16 0.34 -0.90 16 2 C -0.09 -0.96 2.79 -90.50 -0.25 -1.21 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 4 C -0.11 -1.43 5.38 -26.65 -0.14 -1.57 16 5 C 0.05 0.88 5.11 -3.83 -0.02 0.86 16 6 N -0.50 -8.68 4.00 -229.51 -0.92 -9.60 16 7 C 0.03 0.66 5.04 -4.97 -0.03 0.63 16 8 C 0.45 11.20 7.46 -10.98 -0.08 11.12 16 9 O -0.58 -15.87 13.90 5.55 0.08 -15.79 16 10 N -0.56 -14.93 5.29 -10.96 -0.06 -14.99 16 11 C -0.30 -8.50 9.68 -14.94 -0.14 -8.65 16 12 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 13 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -25.19 13.05 55.50 0.72 -24.46 16 15 Si 0.93 21.50 29.55 -169.99 -5.02 16.47 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 19 C 0.10 1.34 2.35 -68.88 -0.16 1.17 16 20 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 21 C 0.47 6.80 6.64 36.01 0.24 7.04 16 22 O -0.48 -8.91 15.39 -18.75 -0.29 -9.20 16 23 O -0.52 -5.47 13.42 -39.24 -0.53 -6.00 16 24 C -0.10 -1.13 4.64 -26.65 -0.12 -1.25 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.11 2.20 5.78 -51.93 -0.30 1.89 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 33 H 0.10 1.93 5.42 -51.93 -0.28 1.65 16 34 H 0.39 9.98 7.90 -40.82 -0.32 9.65 16 35 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.41 2.62 9.10 45.56 0.41 3.04 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 312.90 15.07 4.72 4.72 Total: -1.00 -33.74 312.90 -6.41 -40.15 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -4.65 Total: 10.95 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -0.47 Total: 7.74 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.25 Total: -49.05 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.74 Total: -30.99 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.74 -6.41 -40.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129496889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.422 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds